Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5744 and Pf6N2E2_5745 overlap by 4 nucleotides Pf6N2E2_5745 and Pf6N2E2_5746 overlap by 4 nucleotides Pf6N2E2_5746 and Pf6N2E2_5747 are separated by 43 nucleotides
Pf6N2E2_5744 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 6,560,726 to 6,561,781
_5744
Pf6N2E2_5745 - Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73), at 6,561,778 to 6,562,353
_5745
Pf6N2E2_5746 - Cobalamin synthase, at 6,562,350 to 6,563,081
_5746
Pf6N2E2_5747 - Two-component response regulator, at 6,563,125 to 6,563,730
_5747
Position (kb)
6561
6562
6563 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 6561.474 kb on - strand, within Pf6N2E2_5744 at 6561.897 kb on - strand, within Pf6N2E2_5745 at 6561.897 kb on - strand, within Pf6N2E2_5745 at 6561.897 kb on - strand, within Pf6N2E2_5745 at 6561.924 kb on + strand, within Pf6N2E2_5745 at 6561.925 kb on - strand, within Pf6N2E2_5745 at 6562.016 kb on + strand, within Pf6N2E2_5745 at 6562.016 kb on + strand, within Pf6N2E2_5745 at 6562.017 kb on - strand, within Pf6N2E2_5745 at 6562.079 kb on + strand, within Pf6N2E2_5745 at 6562.079 kb on + strand, within Pf6N2E2_5745 at 6562.103 kb on - strand, within Pf6N2E2_5745 at 6562.186 kb on + strand, within Pf6N2E2_5745 at 6562.186 kb on + strand, within Pf6N2E2_5745 at 6562.186 kb on + strand, within Pf6N2E2_5745 at 6562.187 kb on - strand, within Pf6N2E2_5745 at 6562.187 kb on - strand, within Pf6N2E2_5745 at 6562.187 kb on - strand, within Pf6N2E2_5745 at 6562.187 kb on - strand, within Pf6N2E2_5745 at 6562.824 kb on + strand, within Pf6N2E2_5746 at 6562.824 kb on + strand, within Pf6N2E2_5746 at 6562.824 kb on + strand, within Pf6N2E2_5746 at 6562.825 kb on - strand, within Pf6N2E2_5746 at 6562.825 kb on - strand, within Pf6N2E2_5746 at 6563.057 kb on - strand at 6563.134 kb on + strand at 6563.221 kb on - strand, within Pf6N2E2_5747
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 6,561,474 - Pf6N2E2_5744 0.71 -0.8 6,561,897 - Pf6N2E2_5745 0.21 -0.8 6,561,897 - Pf6N2E2_5745 0.21 -1.9 6,561,897 - Pf6N2E2_5745 0.21 -2.8 6,561,924 + Pf6N2E2_5745 0.25 -3.1 6,561,925 - Pf6N2E2_5745 0.26 -2.2 6,562,016 + Pf6N2E2_5745 0.41 -2.0 6,562,016 + Pf6N2E2_5745 0.41 -0.6 6,562,017 - Pf6N2E2_5745 0.41 -0.8 6,562,079 + Pf6N2E2_5745 0.52 +0.7 6,562,079 + Pf6N2E2_5745 0.52 -0.2 6,562,103 - Pf6N2E2_5745 0.56 -2.8 6,562,186 + Pf6N2E2_5745 0.71 -1.8 6,562,186 + Pf6N2E2_5745 0.71 -0.0 6,562,186 + Pf6N2E2_5745 0.71 -1.0 6,562,187 - Pf6N2E2_5745 0.71 -0.0 6,562,187 - Pf6N2E2_5745 0.71 -2.6 6,562,187 - Pf6N2E2_5745 0.71 -1.3 6,562,187 - Pf6N2E2_5745 0.71 -0.2 6,562,824 + Pf6N2E2_5746 0.65 -1.5 6,562,824 + Pf6N2E2_5746 0.65 -2.7 6,562,824 + Pf6N2E2_5746 0.65 -0.5 6,562,825 - Pf6N2E2_5746 0.65 -2.0 6,562,825 - Pf6N2E2_5746 0.65 -1.2 6,563,057 - -1.4 6,563,134 + -1.4 6,563,221 - Pf6N2E2_5747 0.16 -0.4
Or see this region's nucleotide sequence