Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5607

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5605 and Pf6N2E2_5606 are separated by 244 nucleotidesPf6N2E2_5606 and Pf6N2E2_5607 are separated by 50 nucleotidesPf6N2E2_5607 and Pf6N2E2_5608 are separated by 226 nucleotides Pf6N2E2_5605 - FxsA protein, at 6,420,366 to 6,420,842 _5605 Pf6N2E2_5606 - Heat shock protein 60 family co-chaperone GroES, at 6,421,087 to 6,421,380 _5606 Pf6N2E2_5607 - Heat shock protein 60 family chaperone GroEL, at 6,421,431 to 6,423,074 _5607 Pf6N2E2_5608 - PAP2 superfamily protein, at 6,423,301 to 6,424,044 _5608 Position (kb) 6421 6422 6423 6424Strain fitness (log2 ratio) -1 0 1 2at 6420.785 kb on + strand, within Pf6N2E2_5605at 6420.840 kb on + strandat 6420.840 kb on + strandat 6420.841 kb on - strandat 6420.841 kb on - strandat 6420.920 kb on + strandat 6420.920 kb on + strandat 6420.920 kb on + strandat 6420.939 kb on + strandat 6420.943 kb on + strandat 6420.943 kb on + strandat 6421.031 kb on + strandat 6423.072 kb on + strandat 6423.072 kb on + strandat 6423.072 kb on + strandat 6423.144 kb on + strandat 6423.144 kb on + strandat 6423.328 kb on + strandat 6423.328 kb on + strandat 6423.329 kb on - strandat 6423.329 kb on - strandat 6423.365 kb on + strandat 6423.365 kb on + strandat 6423.365 kb on + strandat 6423.365 kb on + strandat 6423.365 kb on + strandat 6423.366 kb on - strandat 6423.366 kb on - strandat 6423.371 kb on + strandat 6423.371 kb on + strandat 6423.372 kb on - strandat 6423.632 kb on + strand, within Pf6N2E2_5608at 6423.633 kb on - strand, within Pf6N2E2_5608at 6423.633 kb on - strand, within Pf6N2E2_5608at 6423.633 kb on - strand, within Pf6N2E2_5608at 6423.820 kb on + strand, within Pf6N2E2_5608at 6423.820 kb on + strand, within Pf6N2E2_5608at 6423.820 kb on + strand, within Pf6N2E2_5608at 6423.821 kb on - strand, within Pf6N2E2_5608at 6423.885 kb on + strand, within Pf6N2E2_5608at 6423.885 kb on + strand, within Pf6N2E2_5608at 6423.886 kb on - strand, within Pf6N2E2_5608at 6423.908 kb on + strand, within Pf6N2E2_5608at 6423.953 kb on - strand, within Pf6N2E2_5608at 6424.051 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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6,420,785 + Pf6N2E2_5605 0.88 +0.2
6,420,840 + +0.4
6,420,840 + +0.8
6,420,841 - +0.2
6,420,841 - +0.6
6,420,920 + -0.7
6,420,920 + +0.4
6,420,920 + +0.3
6,420,939 + +0.1
6,420,943 + +1.2
6,420,943 + +0.8
6,421,031 + -0.6
6,423,072 + +0.4
6,423,072 + +1.8
6,423,072 + +1.4
6,423,144 + +0.9
6,423,144 + +0.5
6,423,328 + +0.4
6,423,328 + +0.1
6,423,329 - +0.4
6,423,329 - -0.8
6,423,365 + +0.6
6,423,365 + +0.5
6,423,365 + +0.4
6,423,365 + +0.8
6,423,365 + +0.2
6,423,366 - +0.4
6,423,366 - +0.1
6,423,371 + +0.2
6,423,371 + +0.2
6,423,372 - -0.3
6,423,632 + Pf6N2E2_5608 0.44 +1.6
6,423,633 - Pf6N2E2_5608 0.45 +0.7
6,423,633 - Pf6N2E2_5608 0.45 -0.1
6,423,633 - Pf6N2E2_5608 0.45 +0.2
6,423,820 + Pf6N2E2_5608 0.70 -0.9
6,423,820 + Pf6N2E2_5608 0.70 +0.9
6,423,820 + Pf6N2E2_5608 0.70 -0.6
6,423,821 - Pf6N2E2_5608 0.70 +0.1
6,423,885 + Pf6N2E2_5608 0.78 -0.2
6,423,885 + Pf6N2E2_5608 0.78 +1.0
6,423,886 - Pf6N2E2_5608 0.79 +0.0
6,423,908 + Pf6N2E2_5608 0.82 -0.5
6,423,953 - Pf6N2E2_5608 0.88 -0.0
6,424,051 - -0.2

Or see this region's nucleotide sequence