Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4165

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4164 and Pf6N2E2_4165 are separated by 165 nucleotidesPf6N2E2_4165 and Pf6N2E2_4166 are separated by 114 nucleotidesPf6N2E2_4166 and Pf6N2E2_4167 overlap by 1 nucleotides Pf6N2E2_4164 - Homoserine kinase (EC 2.7.1.39), at 4,846,508 to 4,847,458 _4164 Pf6N2E2_4165 - Zinc ABC transporter, periplasmic-binding protein ZnuA, at 4,847,624 to 4,848,553 _4165 Pf6N2E2_4166 - Zinc uptake regulation protein ZUR, at 4,848,668 to 4,849,102 _4166 Pf6N2E2_4167 - Zinc ABC transporter, ATP-binding protein ZnuC, at 4,849,102 to 4,849,884 _4167 Position (kb) 4847 4848 4849Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4847.456 kb on + strandat 4847.456 kb on + strandat 4847.456 kb on + strandat 4847.456 kb on + strandat 4847.456 kb on + strandat 4847.456 kb on + strandat 4847.456 kb on + strandat 4847.456 kb on + strandat 4847.456 kb on + strandat 4847.456 kb on + strandat 4847.457 kb on - strandat 4847.457 kb on - strandat 4847.457 kb on - strandat 4847.457 kb on - strandat 4847.457 kb on - strandat 4847.457 kb on - strandat 4847.457 kb on - strandat 4847.460 kb on + strandat 4847.460 kb on + strandat 4847.460 kb on + strandat 4847.460 kb on + strandat 4847.461 kb on - strandat 4847.461 kb on - strandat 4847.461 kb on - strandat 4847.461 kb on - strandat 4847.461 kb on - strandat 4847.461 kb on - strandat 4847.627 kb on + strandat 4847.627 kb on + strandat 4847.627 kb on + strandat 4847.627 kb on + strandat 4847.627 kb on + strandat 4847.628 kb on - strandat 4847.628 kb on - strandat 4847.628 kb on - strandat 4847.628 kb on - strandat 4847.682 kb on + strandat 4847.706 kb on + strandat 4847.706 kb on + strandat 4847.706 kb on + strandat 4847.706 kb on + strandat 4847.707 kb on - strandat 4847.907 kb on + strand, within Pf6N2E2_4165at 4847.907 kb on + strand, within Pf6N2E2_4165at 4847.907 kb on + strand, within Pf6N2E2_4165at 4847.907 kb on + strand, within Pf6N2E2_4165at 4847.907 kb on + strand, within Pf6N2E2_4165at 4847.907 kb on + strand, within Pf6N2E2_4165at 4847.907 kb on + strand, within Pf6N2E2_4165at 4847.908 kb on - strand, within Pf6N2E2_4165at 4847.908 kb on - strand, within Pf6N2E2_4165at 4847.908 kb on - strand, within Pf6N2E2_4165at 4847.923 kb on - strand, within Pf6N2E2_4165at 4847.949 kb on + strand, within Pf6N2E2_4165at 4847.950 kb on - strand, within Pf6N2E2_4165at 4847.950 kb on - strand, within Pf6N2E2_4165at 4848.322 kb on - strand, within Pf6N2E2_4165at 4848.372 kb on + strand, within Pf6N2E2_4165at 4848.373 kb on - strand, within Pf6N2E2_4165at 4848.507 kb on - strandat 4848.566 kb on + strandat 4848.566 kb on + strandat 4848.566 kb on + strandat 4848.567 kb on - strandat 4848.587 kb on + strandat 4848.588 kb on - strandat 4848.625 kb on + strandat 4848.625 kb on + strandat 4848.626 kb on - strandat 4848.626 kb on - strandat 4848.626 kb on - strandat 4848.628 kb on + strandat 4848.628 kb on + strandat 4848.628 kb on + strandat 4848.629 kb on - strandat 4848.629 kb on - strandat 4848.629 kb on - strandat 4848.629 kb on - strandat 4848.629 kb on - strandat 4849.315 kb on + strand, within Pf6N2E2_4167at 4849.315 kb on + strand, within Pf6N2E2_4167at 4849.315 kb on + strand, within Pf6N2E2_4167at 4849.316 kb on - strand, within Pf6N2E2_4167at 4849.317 kb on + strand, within Pf6N2E2_4167at 4849.317 kb on + strand, within Pf6N2E2_4167at 4849.318 kb on - strand, within Pf6N2E2_4167at 4849.318 kb on - strand, within Pf6N2E2_4167at 4849.490 kb on + strand, within Pf6N2E2_4167at 4849.490 kb on + strand, within Pf6N2E2_4167

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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4,847,456 + +0.2
4,847,456 + -0.1
4,847,456 + +1.2
4,847,456 + +0.2
4,847,456 + -1.2
4,847,456 + +0.3
4,847,456 + +0.0
4,847,456 + +0.6
4,847,456 + +0.5
4,847,456 + +0.0
4,847,457 - +0.2
4,847,457 - +0.1
4,847,457 - +0.7
4,847,457 - -0.8
4,847,457 - +0.6
4,847,457 - +0.2
4,847,457 - +0.1
4,847,460 + +0.4
4,847,460 + +0.2
4,847,460 + +0.1
4,847,460 + -0.6
4,847,461 - -0.1
4,847,461 - +0.5
4,847,461 - -0.7
4,847,461 - +0.3
4,847,461 - +1.0
4,847,461 - +0.2
4,847,627 + +1.7
4,847,627 + +1.2
4,847,627 + +0.4
4,847,627 + -1.1
4,847,627 + +0.7
4,847,628 - +0.8
4,847,628 - +0.2
4,847,628 - +0.4
4,847,628 - +0.3
4,847,682 + -3.1
4,847,706 + -1.8
4,847,706 + -1.5
4,847,706 + +0.1
4,847,706 + -1.0
4,847,707 - -0.1
4,847,907 + Pf6N2E2_4165 0.30 -2.3
4,847,907 + Pf6N2E2_4165 0.30 +0.2
4,847,907 + Pf6N2E2_4165 0.30 -0.8
4,847,907 + Pf6N2E2_4165 0.30 -1.0
4,847,907 + Pf6N2E2_4165 0.30 -0.3
4,847,907 + Pf6N2E2_4165 0.30 -1.5
4,847,907 + Pf6N2E2_4165 0.30 -0.6
4,847,908 - Pf6N2E2_4165 0.31 -0.9
4,847,908 - Pf6N2E2_4165 0.31 -1.4
4,847,908 - Pf6N2E2_4165 0.31 -1.3
4,847,923 - Pf6N2E2_4165 0.32 -1.0
4,847,949 + Pf6N2E2_4165 0.35 -2.0
4,847,950 - Pf6N2E2_4165 0.35 -1.1
4,847,950 - Pf6N2E2_4165 0.35 -1.3
4,848,322 - Pf6N2E2_4165 0.75 +2.7
4,848,372 + Pf6N2E2_4165 0.80 +1.2
4,848,373 - Pf6N2E2_4165 0.81 -0.8
4,848,507 - -1.9
4,848,566 + -2.0
4,848,566 + +0.2
4,848,566 + -1.0
4,848,567 - +1.7
4,848,587 + -0.9
4,848,588 - -0.0
4,848,625 + -0.3
4,848,625 + -0.1
4,848,626 - -0.0
4,848,626 - -2.2
4,848,626 - -0.3
4,848,628 + -0.4
4,848,628 + -0.1
4,848,628 + -1.1
4,848,629 - -1.3
4,848,629 - -0.1
4,848,629 - -0.1
4,848,629 - -2.0
4,848,629 - -1.1
4,849,315 + Pf6N2E2_4167 0.27 -2.1
4,849,315 + Pf6N2E2_4167 0.27 -1.4
4,849,315 + Pf6N2E2_4167 0.27 -0.8
4,849,316 - Pf6N2E2_4167 0.27 +0.0
4,849,317 + Pf6N2E2_4167 0.27 -0.7
4,849,317 + Pf6N2E2_4167 0.27 -0.3
4,849,318 - Pf6N2E2_4167 0.28 -1.7
4,849,318 - Pf6N2E2_4167 0.28 -1.7
4,849,490 + Pf6N2E2_4167 0.50 +1.5
4,849,490 + Pf6N2E2_4167 0.50 -0.8

Or see this region's nucleotide sequence