Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3416

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt Pf6N2E2_3416 - FIG00923625: hypothetical protein, at 3,962,252 to 3,963,151 _3416 Position (kb) 3962 3963 3964Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3961.269 kb on + strandat 3961.270 kb on - strandat 3961.290 kb on + strandat 3961.290 kb on + strandat 3961.290 kb on + strandat 3961.290 kb on + strandat 3961.290 kb on + strandat 3961.290 kb on + strandat 3961.290 kb on + strandat 3961.291 kb on - strandat 3961.291 kb on - strandat 3961.291 kb on - strandat 3961.291 kb on - strandat 3961.291 kb on - strandat 3961.291 kb on - strandat 3961.291 kb on - strandat 3961.291 kb on - strandat 3961.291 kb on - strandat 3961.291 kb on - strandat 3961.292 kb on + strandat 3961.293 kb on - strandat 3961.293 kb on - strandat 3961.308 kb on + strandat 3961.452 kb on + strandat 3961.452 kb on + strandat 3961.565 kb on + strandat 3961.565 kb on + strandat 3961.565 kb on + strandat 3961.565 kb on + strandat 3961.566 kb on - strandat 3961.566 kb on - strandat 3961.566 kb on - strandat 3961.566 kb on - strandat 3961.596 kb on + strandat 3961.597 kb on - strandat 3961.617 kb on + strandat 3961.617 kb on + strandat 3961.618 kb on - strandat 3961.618 kb on - strandat 3961.618 kb on - strandat 3961.630 kb on - strandat 3961.630 kb on - strandat 3961.634 kb on + strandat 3961.634 kb on + strandat 3961.634 kb on + strandat 3961.634 kb on + strandat 3961.634 kb on + strandat 3961.634 kb on + strandat 3961.634 kb on + strandat 3961.634 kb on + strandat 3961.635 kb on - strandat 3961.635 kb on - strandat 3961.635 kb on - strandat 3961.635 kb on - strandat 3961.657 kb on + strandat 3961.657 kb on + strandat 3961.657 kb on + strandat 3961.657 kb on + strandat 3961.657 kb on + strandat 3961.657 kb on + strandat 3961.657 kb on + strandat 3961.657 kb on + strandat 3961.657 kb on + strandat 3961.657 kb on + strandat 3961.658 kb on - strandat 3961.658 kb on - strandat 3961.658 kb on - strandat 3961.670 kb on + strandat 3961.670 kb on + strandat 3961.671 kb on - strandat 3961.671 kb on - strandat 3961.671 kb on - strandat 3961.711 kb on + strandat 3961.711 kb on + strandat 3961.712 kb on - strandat 3961.712 kb on - strandat 3961.712 kb on - strandat 3961.712 kb on - strandat 3961.712 kb on - strandat 3961.810 kb on - strandat 3961.810 kb on - strandat 3961.810 kb on - strandat 3961.965 kb on - strandat 3962.027 kb on - strandat 3962.061 kb on + strandat 3962.061 kb on + strandat 3962.061 kb on + strandat 3962.062 kb on - strandat 3962.062 kb on - strandat 3962.062 kb on - strandat 3962.062 kb on - strandat 3962.062 kb on - strandat 3962.069 kb on + strandat 3962.069 kb on + strandat 3962.070 kb on - strandat 3962.070 kb on - strandat 3962.070 kb on - strandat 3962.070 kb on - strandat 3962.153 kb on + strandat 3962.153 kb on + strandat 3962.153 kb on + strandat 3962.153 kb on + strandat 3962.153 kb on + strandat 3962.153 kb on + strandat 3962.154 kb on - strandat 3962.154 kb on - strandat 3962.154 kb on - strandat 3962.154 kb on - strandat 3962.154 kb on - strandat 3962.154 kb on - strandat 3962.154 kb on - strandat 3962.154 kb on - strandat 3962.154 kb on - strandat 3962.154 kb on - strandat 3962.154 kb on - strandat 3962.154 kb on - strandat 3962.157 kb on + strandat 3962.157 kb on + strandat 3962.158 kb on - strandat 3962.158 kb on - strandat 3962.158 kb on - strandat 3962.158 kb on - strandat 3962.158 kb on - strandat 3962.158 kb on - strandat 3962.158 kb on - strandat 3962.158 kb on - strandat 3962.185 kb on + strandat 3962.186 kb on - strandat 3962.186 kb on - strandat 3962.229 kb on - strandat 3962.229 kb on - strandat 3962.229 kb on - strandat 3962.229 kb on - strandat 3962.300 kb on + strandat 3962.301 kb on - strandat 3962.301 kb on - strandat 3962.301 kb on - strandat 3962.301 kb on - strandat 3962.301 kb on - strandat 3962.365 kb on - strand, within Pf6N2E2_3416at 3962.365 kb on - strand, within Pf6N2E2_3416at 3962.365 kb on - strand, within Pf6N2E2_3416at 3962.365 kb on - strand, within Pf6N2E2_3416at 3962.389 kb on + strand, within Pf6N2E2_3416at 3962.390 kb on - strand, within Pf6N2E2_3416at 3962.390 kb on - strand, within Pf6N2E2_3416at 3962.390 kb on - strand, within Pf6N2E2_3416at 3962.464 kb on + strand, within Pf6N2E2_3416at 3962.535 kb on + strand, within Pf6N2E2_3416at 3962.550 kb on - strand, within Pf6N2E2_3416at 3962.550 kb on - strand, within Pf6N2E2_3416at 3962.550 kb on - strand, within Pf6N2E2_3416at 3962.692 kb on + strand, within Pf6N2E2_3416at 3962.693 kb on - strand, within Pf6N2E2_3416at 3962.693 kb on - strand, within Pf6N2E2_3416at 3962.767 kb on - strand, within Pf6N2E2_3416at 3962.781 kb on - strand, within Pf6N2E2_3416at 3962.821 kb on - strand, within Pf6N2E2_3416at 3962.821 kb on - strand, within Pf6N2E2_3416at 3962.821 kb on - strand, within Pf6N2E2_3416at 3962.840 kb on + strand, within Pf6N2E2_3416at 3962.840 kb on + strand, within Pf6N2E2_3416at 3962.840 kb on + strand, within Pf6N2E2_3416at 3962.840 kb on + strand, within Pf6N2E2_3416at 3962.840 kb on + strand, within Pf6N2E2_3416at 3962.840 kb on + strand, within Pf6N2E2_3416at 3962.840 kb on + strand, within Pf6N2E2_3416at 3962.840 kb on + strand, within Pf6N2E2_3416at 3962.841 kb on - strand, within Pf6N2E2_3416at 3962.841 kb on - strand, within Pf6N2E2_3416at 3962.841 kb on - strand, within Pf6N2E2_3416at 3962.841 kb on - strand, within Pf6N2E2_3416at 3962.841 kb on - strand, within Pf6N2E2_3416at 3962.841 kb on - strand, within Pf6N2E2_3416at 3962.841 kb on - strand, within Pf6N2E2_3416at 3962.841 kb on - strand, within Pf6N2E2_3416at 3962.841 kb on - strand, within Pf6N2E2_3416at 3962.841 kb on - strand, within Pf6N2E2_3416at 3962.841 kb on - strand, within Pf6N2E2_3416at 3962.841 kb on - strand, within Pf6N2E2_3416at 3962.841 kb on - strand, within Pf6N2E2_3416at 3962.841 kb on - strand, within Pf6N2E2_3416at 3962.842 kb on + strand, within Pf6N2E2_3416at 3962.842 kb on + strand, within Pf6N2E2_3416at 3962.843 kb on - strand, within Pf6N2E2_3416at 3962.843 kb on - strand, within Pf6N2E2_3416at 3962.873 kb on + strand, within Pf6N2E2_3416at 3962.992 kb on + strand, within Pf6N2E2_3416at 3962.992 kb on + strand, within Pf6N2E2_3416at 3962.992 kb on + strand, within Pf6N2E2_3416at 3962.993 kb on - strand, within Pf6N2E2_3416at 3962.993 kb on - strand, within Pf6N2E2_3416at 3962.993 kb on - strand, within Pf6N2E2_3416at 3963.014 kb on + strand, within Pf6N2E2_3416at 3963.014 kb on + strand, within Pf6N2E2_3416at 3963.015 kb on - strand, within Pf6N2E2_3416at 3963.015 kb on - strand, within Pf6N2E2_3416at 3963.015 kb on - strand, within Pf6N2E2_3416at 3963.015 kb on - strand, within Pf6N2E2_3416at 3963.015 kb on - strand, within Pf6N2E2_3416at 3963.160 kb on - strandat 3963.163 kb on + strandat 3963.163 kb on + strandat 3963.163 kb on + strandat 3963.163 kb on + strandat 3963.164 kb on - strandat 3963.164 kb on - strandat 3963.183 kb on + strandat 3963.184 kb on - strandat 3963.186 kb on - strandat 3963.346 kb on - strandat 3963.346 kb on - strandat 3963.349 kb on + strandat 3963.352 kb on - strandat 3963.352 kb on - strandat 3963.352 kb on - strandat 3963.410 kb on - strandat 3963.419 kb on + strandat 3963.420 kb on - strandat 3963.420 kb on - strandat 3963.420 kb on - strandat 3963.423 kb on + strandat 3963.424 kb on - strandat 3963.424 kb on - strandat 3963.443 kb on + strandat 3963.444 kb on - strandat 3963.477 kb on - strandat 3963.477 kb on - strandat 3963.477 kb on - strandat 3963.477 kb on - strandat 3963.511 kb on + strandat 3963.539 kb on - strandat 3963.548 kb on + strandat 3963.549 kb on - strandat 3963.620 kb on + strandat 3963.620 kb on + strandat 3963.620 kb on + strandat 3963.621 kb on - strandat 3963.621 kb on - strandat 3963.621 kb on - strandat 3963.621 kb on - strandat 3963.621 kb on - strandat 3963.621 kb on - strandat 3963.667 kb on - strandat 3963.716 kb on + strandat 3963.717 kb on - strandat 3963.793 kb on + strandat 3963.793 kb on + strandat 3963.793 kb on + strandat 3963.793 kb on + strandat 3963.794 kb on - strandat 3963.794 kb on - strandat 3963.794 kb on - strandat 3963.794 kb on - strandat 3963.794 kb on - strandat 3963.794 kb on - strandat 3963.867 kb on + strandat 3963.868 kb on - strandat 3963.868 kb on - strandat 3963.868 kb on - strandat 3963.868 kb on - strandat 3963.913 kb on + strandat 3963.913 kb on + strandat 3963.913 kb on + strandat 3963.913 kb on + strandat 3963.914 kb on - strandat 3963.914 kb on - strandat 3963.915 kb on + strandat 3963.915 kb on + strandat 3963.946 kb on + strandat 3963.947 kb on - strandat 3963.947 kb on - strandat 3963.947 kb on - strandat 3963.947 kb on - strandat 3963.947 kb on - strandat 3963.947 kb on - strandat 3963.952 kb on + strandat 3963.953 kb on - strandat 3964.032 kb on - strandat 3964.032 kb on - strandat 3964.032 kb on - strandat 3964.032 kb on - strandat 3964.050 kb on + strandat 3964.069 kb on + strandat 3964.070 kb on - strandat 3964.124 kb on + strandat 3964.125 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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3,961,269 + +0.9
3,961,270 - +0.2
3,961,290 + +0.1
3,961,290 + +0.9
3,961,290 + -0.4
3,961,290 + +0.0
3,961,290 + -1.6
3,961,290 + -0.8
3,961,290 + -0.6
3,961,291 - +0.6
3,961,291 - +0.3
3,961,291 - +0.8
3,961,291 - +0.6
3,961,291 - +0.0
3,961,291 - -0.9
3,961,291 - +1.2
3,961,291 - +0.8
3,961,291 - -0.2
3,961,291 - -0.2
3,961,292 + -0.9
3,961,293 - +0.7
3,961,293 - +0.6
3,961,308 + +0.8
3,961,452 + -0.1
3,961,452 + -0.1
3,961,565 + +0.1
3,961,565 + -1.2
3,961,565 + +0.3
3,961,565 + +0.8
3,961,566 - +0.2
3,961,566 - +0.8
3,961,566 - +0.7
3,961,566 - +0.1
3,961,596 + +0.4
3,961,597 - +0.2
3,961,617 + +0.6
3,961,617 + +0.0
3,961,618 - -0.8
3,961,618 - +0.3
3,961,618 - +0.1
3,961,630 - -0.3
3,961,630 - -0.3
3,961,634 + +0.2
3,961,634 + -0.7
3,961,634 + -0.3
3,961,634 + -2.2
3,961,634 + +0.5
3,961,634 + +0.5
3,961,634 + +0.7
3,961,634 + +0.6
3,961,635 - +0.6
3,961,635 - +0.6
3,961,635 - +1.3
3,961,635 - -0.6
3,961,657 + +0.0
3,961,657 + +0.1
3,961,657 + -0.7
3,961,657 + +0.0
3,961,657 + +0.2
3,961,657 + +0.8
3,961,657 + +0.1
3,961,657 + -0.6
3,961,657 + +1.8
3,961,657 + -0.5
3,961,658 - +0.8
3,961,658 - +0.6
3,961,658 - +0.7
3,961,670 + +0.1
3,961,670 + -0.5
3,961,671 - +0.7
3,961,671 - -0.8
3,961,671 - +0.0
3,961,711 + +0.6
3,961,711 + -1.0
3,961,712 - -1.0
3,961,712 - -0.0
3,961,712 - +0.1
3,961,712 - +1.3
3,961,712 - +0.7
3,961,810 - -0.2
3,961,810 - -1.7
3,961,810 - -0.7
3,961,965 - +0.2
3,962,027 - +0.8
3,962,061 + +0.0
3,962,061 + +0.5
3,962,061 + +0.6
3,962,062 - +0.3
3,962,062 - +1.3
3,962,062 - +0.7
3,962,062 - +1.8
3,962,062 - +1.9
3,962,069 + +0.8
3,962,069 + +0.5
3,962,070 - +0.6
3,962,070 - +0.8
3,962,070 - +0.3
3,962,070 - -0.4
3,962,153 + -0.6
3,962,153 + -0.6
3,962,153 + -0.3
3,962,153 + +0.1
3,962,153 + -0.7
3,962,153 + +0.8
3,962,154 - +0.9
3,962,154 - -2.1
3,962,154 - +0.6
3,962,154 - +0.5
3,962,154 - -0.8
3,962,154 - +0.1
3,962,154 - -0.0
3,962,154 - +0.6
3,962,154 - -0.4
3,962,154 - -0.8
3,962,154 - +0.4
3,962,154 - +0.4
3,962,157 + +0.9
3,962,157 + +0.2
3,962,158 - +0.2
3,962,158 - +0.0
3,962,158 - +0.7
3,962,158 - -0.2
3,962,158 - +0.3
3,962,158 - -0.7
3,962,158 - +2.0
3,962,158 - +0.3
3,962,185 + +0.7
3,962,186 - +0.6
3,962,186 - +1.3
3,962,229 - -0.9
3,962,229 - -0.0
3,962,229 - +0.7
3,962,229 - -1.0
3,962,300 + -0.4
3,962,301 - +0.6
3,962,301 - +1.3
3,962,301 - -0.2
3,962,301 - +0.7
3,962,301 - +0.8
3,962,365 - Pf6N2E2_3416 0.13 +1.3
3,962,365 - Pf6N2E2_3416 0.13 -0.7
3,962,365 - Pf6N2E2_3416 0.13 +0.5
3,962,365 - Pf6N2E2_3416 0.13 +0.3
3,962,389 + Pf6N2E2_3416 0.15 -0.2
3,962,390 - Pf6N2E2_3416 0.15 +0.8
3,962,390 - Pf6N2E2_3416 0.15 -0.0
3,962,390 - Pf6N2E2_3416 0.15 +1.5
3,962,464 + Pf6N2E2_3416 0.24 +0.3
3,962,535 + Pf6N2E2_3416 0.31 +1.8
3,962,550 - Pf6N2E2_3416 0.33 +0.1
3,962,550 - Pf6N2E2_3416 0.33 -0.6
3,962,550 - Pf6N2E2_3416 0.33 +0.2
3,962,692 + Pf6N2E2_3416 0.49 +0.4
3,962,693 - Pf6N2E2_3416 0.49 +0.4
3,962,693 - Pf6N2E2_3416 0.49 +0.5
3,962,767 - Pf6N2E2_3416 0.57 +0.7
3,962,781 - Pf6N2E2_3416 0.59 -1.2
3,962,821 - Pf6N2E2_3416 0.63 -1.1
3,962,821 - Pf6N2E2_3416 0.63 +0.7
3,962,821 - Pf6N2E2_3416 0.63 +2.6
3,962,840 + Pf6N2E2_3416 0.65 +0.1
3,962,840 + Pf6N2E2_3416 0.65 +0.2
3,962,840 + Pf6N2E2_3416 0.65 +0.6
3,962,840 + Pf6N2E2_3416 0.65 +0.6
3,962,840 + Pf6N2E2_3416 0.65 -0.3
3,962,840 + Pf6N2E2_3416 0.65 -0.1
3,962,840 + Pf6N2E2_3416 0.65 +0.3
3,962,840 + Pf6N2E2_3416 0.65 -0.9
3,962,841 - Pf6N2E2_3416 0.65 -0.2
3,962,841 - Pf6N2E2_3416 0.65 -0.9
3,962,841 - Pf6N2E2_3416 0.65 +0.6
3,962,841 - Pf6N2E2_3416 0.65 -0.1
3,962,841 - Pf6N2E2_3416 0.65 +1.3
3,962,841 - Pf6N2E2_3416 0.65 +1.4
3,962,841 - Pf6N2E2_3416 0.65 +1.5
3,962,841 - Pf6N2E2_3416 0.65 -0.3
3,962,841 - Pf6N2E2_3416 0.65 +0.2
3,962,841 - Pf6N2E2_3416 0.65 +0.2
3,962,841 - Pf6N2E2_3416 0.65 +1.1
3,962,841 - Pf6N2E2_3416 0.65 +0.5
3,962,841 - Pf6N2E2_3416 0.65 +2.2
3,962,841 - Pf6N2E2_3416 0.65 +0.5
3,962,842 + Pf6N2E2_3416 0.66 +0.6
3,962,842 + Pf6N2E2_3416 0.66 +0.3
3,962,843 - Pf6N2E2_3416 0.66 +0.2
3,962,843 - Pf6N2E2_3416 0.66 +0.1
3,962,873 + Pf6N2E2_3416 0.69 +0.6
3,962,992 + Pf6N2E2_3416 0.82 +1.1
3,962,992 + Pf6N2E2_3416 0.82 +0.3
3,962,992 + Pf6N2E2_3416 0.82 -0.2
3,962,993 - Pf6N2E2_3416 0.82 +1.1
3,962,993 - Pf6N2E2_3416 0.82 -0.5
3,962,993 - Pf6N2E2_3416 0.82 +1.0
3,963,014 + Pf6N2E2_3416 0.85 -0.5
3,963,014 + Pf6N2E2_3416 0.85 +0.0
3,963,015 - Pf6N2E2_3416 0.85 -1.4
3,963,015 - Pf6N2E2_3416 0.85 -1.0
3,963,015 - Pf6N2E2_3416 0.85 -0.2
3,963,015 - Pf6N2E2_3416 0.85 -0.3
3,963,015 - Pf6N2E2_3416 0.85 +0.6
3,963,160 - +1.2
3,963,163 + +0.0
3,963,163 + +0.9
3,963,163 + +0.3
3,963,163 + -0.2
3,963,164 - +0.6
3,963,164 - -0.5
3,963,183 + -1.1
3,963,184 - +0.3
3,963,186 - +0.5
3,963,346 - +0.3
3,963,346 - +1.3
3,963,349 + -0.7
3,963,352 - -0.4
3,963,352 - +1.3
3,963,352 - -0.9
3,963,410 - +1.0
3,963,419 + -0.1
3,963,420 - -0.2
3,963,420 - -0.1
3,963,420 - +0.3
3,963,423 + -0.8
3,963,424 - +0.1
3,963,424 - +2.3
3,963,443 + +0.7
3,963,444 - -0.0
3,963,477 - -0.2
3,963,477 - +0.8
3,963,477 - +0.6
3,963,477 - -0.7
3,963,511 + +0.5
3,963,539 - -0.7
3,963,548 + -0.3
3,963,549 - -0.6
3,963,620 + +1.2
3,963,620 + +0.4
3,963,620 + +0.9
3,963,621 - -0.1
3,963,621 - -0.4
3,963,621 - +0.4
3,963,621 - +0.2
3,963,621 - +0.9
3,963,621 - -0.5
3,963,667 - -0.7
3,963,716 + +0.1
3,963,717 - -1.0
3,963,793 + +0.9
3,963,793 + +0.3
3,963,793 + +0.8
3,963,793 + -0.3
3,963,794 - +2.1
3,963,794 - -0.6
3,963,794 - +1.7
3,963,794 - +0.3
3,963,794 - -0.2
3,963,794 - +1.2
3,963,867 + +0.9
3,963,868 - -0.2
3,963,868 - +1.2
3,963,868 - +0.2
3,963,868 - +0.6
3,963,913 + +1.7
3,963,913 + +1.8
3,963,913 + -2.4
3,963,913 + +0.0
3,963,914 - -0.2
3,963,914 - +0.1
3,963,915 + +1.2
3,963,915 + -0.2
3,963,946 + +3.3
3,963,947 - -0.7
3,963,947 - -1.5
3,963,947 - +0.8
3,963,947 - +0.3
3,963,947 - -0.4
3,963,947 - -0.1
3,963,952 + +0.9
3,963,953 - -0.8
3,964,032 - -0.5
3,964,032 - +1.1
3,964,032 - +1.7
3,964,032 - +0.7
3,964,050 + +0.3
3,964,069 + +0.8
3,964,070 - +1.0
3,964,124 + -0.0
3,964,125 - -0.2

Or see this region's nucleotide sequence