Strain Fitness in Marinobacter adhaerens HP15 around HP15_2171

Experiment: m.b. Furfuryl Alcohol 0.125 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2170 and HP15_2171 are separated by 51 nucleotidesHP15_2171 and HP15_2172 are separated by 251 nucleotides HP15_2170: HP15_2170 - ABC-type sugar transport system, periplasmic component, at 2,279,786 to 2,281,570 _2170 HP15_2171: HP15_2171 - uracil-DNA glycosylase superfamily, at 2,281,622 to 2,282,071 _2171 HP15_2172: HP15_2172 - nitrorecductase, at 2,282,323 to 2,283,063 _2172 Position (kb) 2281 2282 2283Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2280.661 kb on + strand, within HP15_2170at 2280.786 kb on + strand, within HP15_2170at 2280.786 kb on + strand, within HP15_2170at 2280.843 kb on - strand, within HP15_2170at 2281.193 kb on - strand, within HP15_2170at 2281.250 kb on + strand, within HP15_2170at 2281.366 kb on + strand, within HP15_2170at 2281.366 kb on + strand, within HP15_2170at 2281.374 kb on - strand, within HP15_2170at 2281.374 kb on - strand, within HP15_2170at 2281.379 kb on - strand, within HP15_2170at 2281.547 kb on + strandat 2281.738 kb on - strand, within HP15_2171at 2281.739 kb on - strand, within HP15_2171at 2281.755 kb on + strand, within HP15_2171at 2281.758 kb on + strand, within HP15_2171at 2281.806 kb on + strand, within HP15_2171at 2282.095 kb on - strandat 2282.226 kb on + strandat 2282.438 kb on - strand, within HP15_2172at 2282.555 kb on + strand, within HP15_2172at 2282.737 kb on + strand, within HP15_2172at 2282.745 kb on - strand, within HP15_2172at 2282.745 kb on - strand, within HP15_2172at 2282.794 kb on - strand, within HP15_2172at 2282.849 kb on - strand, within HP15_2172at 2282.923 kb on - strand, within HP15_2172at 2282.962 kb on + strand, within HP15_2172at 2283.029 kb on + strandat 2283.057 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.125 vol%
remove
2,280,661 + HP15_2170 0.49 -0.1
2,280,786 + HP15_2170 0.56 -0.4
2,280,786 + HP15_2170 0.56 -4.1
2,280,843 - HP15_2170 0.59 -0.2
2,281,193 - HP15_2170 0.79 -0.4
2,281,250 + HP15_2170 0.82 -0.3
2,281,366 + HP15_2170 0.89 +0.2
2,281,366 + HP15_2170 0.89 +0.1
2,281,374 - HP15_2170 0.89 -0.8
2,281,374 - HP15_2170 0.89 -0.5
2,281,379 - HP15_2170 0.89 -0.2
2,281,547 + +1.3
2,281,738 - HP15_2171 0.26 +0.1
2,281,739 - HP15_2171 0.26 -0.3
2,281,755 + HP15_2171 0.30 -0.1
2,281,758 + HP15_2171 0.30 +1.2
2,281,806 + HP15_2171 0.41 +0.6
2,282,095 - +0.2
2,282,226 + -0.4
2,282,438 - HP15_2172 0.16 -0.0
2,282,555 + HP15_2172 0.31 +0.4
2,282,737 + HP15_2172 0.56 -1.3
2,282,745 - HP15_2172 0.57 +0.3
2,282,745 - HP15_2172 0.57 +0.1
2,282,794 - HP15_2172 0.64 -0.3
2,282,849 - HP15_2172 0.71 -0.3
2,282,923 - HP15_2172 0.81 +0.5
2,282,962 + HP15_2172 0.86 -0.4
2,283,029 + -0.1
2,283,057 + -0.4

Or see this region's nucleotide sequence