Experiment: m.b. Furfuryl Alcohol 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2001 and HP15_2002 are separated by 12 nucleotides HP15_2002 and HP15_2003 overlap by 4 nucleotides HP15_2003 and HP15_2004 overlap by 1 nucleotides HP15_2004 and HP15_2005 are separated by 34 nucleotides HP15_2005 and HP15_2006 are separated by 13 nucleotides HP15_2006 and HP15_2007 overlap by 1 nucleotides
HP15_2001: HP15_2001 - hypothetical protein, at 2,105,777 to 2,106,061
_2001
HP15_2002: HP15_2002 - conserved hypothetical protein, at 2,106,074 to 2,106,415
_2002
HP15_2003: HP15_2003 - hypothetical protein, at 2,106,412 to 2,106,843
_2003
HP15_2004: HP15_2004 - membrane or secreted protein, at 2,106,843 to 2,106,971
_2004
HP15_2005: HP15_2005 - hypothetical protein, at 2,107,006 to 2,107,449
_2005
HP15_2006: HP15_2006 - hypothetical protein, at 2,107,463 to 2,107,666
_2006
HP15_2007: HP15_2007 - prophage lambda integrase, at 2,107,666 to 2,108,787
_2007
Position (kb)
2107
2108 Strain fitness (log2 ratio)
-1
0
1 at 2106.089 kb on - strand at 2106.277 kb on + strand, within HP15_2002 at 2106.295 kb on + strand, within HP15_2002 at 2106.365 kb on + strand, within HP15_2002 at 2106.416 kb on - strand at 2106.650 kb on - strand, within HP15_2003 at 2106.741 kb on - strand, within HP15_2003 at 2106.966 kb on + strand at 2107.090 kb on - strand, within HP15_2005 at 2107.218 kb on - strand at 2107.270 kb on - strand, within HP15_2005 at 2107.329 kb on + strand, within HP15_2005 at 2107.344 kb on - strand, within HP15_2005 at 2107.468 kb on - strand at 2107.471 kb on + strand at 2107.471 kb on + strand at 2107.527 kb on + strand, within HP15_2006 at 2107.535 kb on - strand, within HP15_2006 at 2107.588 kb on + strand, within HP15_2006 at 2108.039 kb on - strand, within HP15_2007 at 2108.093 kb on + strand, within HP15_2007 at 2108.134 kb on + strand, within HP15_2007 at 2108.143 kb on - strand, within HP15_2007 at 2108.210 kb on + strand, within HP15_2007 at 2108.216 kb on + strand, within HP15_2007 at 2108.216 kb on + strand, within HP15_2007 at 2108.256 kb on - strand, within HP15_2007 at 2108.268 kb on - strand, within HP15_2007 at 2108.347 kb on + strand, within HP15_2007 at 2108.348 kb on - strand, within HP15_2007 at 2108.386 kb on + strand, within HP15_2007 at 2108.416 kb on - strand, within HP15_2007 at 2108.433 kb on - strand, within HP15_2007
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.125 vol% remove 2,106,089 - +0.1 2,106,277 + HP15_2002 0.59 -0.3 2,106,295 + HP15_2002 0.65 +0.5 2,106,365 + HP15_2002 0.85 +0.4 2,106,416 - -0.1 2,106,650 - HP15_2003 0.55 +0.4 2,106,741 - HP15_2003 0.76 -0.1 2,106,966 + -0.1 2,107,090 - HP15_2005 0.19 -1.0 2,107,218 - -0.3 2,107,270 - HP15_2005 0.59 -0.5 2,107,329 + HP15_2005 0.73 -0.9 2,107,344 - HP15_2005 0.76 -1.2 2,107,468 - +0.1 2,107,471 + +0.4 2,107,471 + +0.0 2,107,527 + HP15_2006 0.31 +0.1 2,107,535 - HP15_2006 0.35 -0.3 2,107,588 + HP15_2006 0.61 -0.8 2,108,039 - HP15_2007 0.33 +0.1 2,108,093 + HP15_2007 0.38 +0.3 2,108,134 + HP15_2007 0.42 -0.1 2,108,143 - HP15_2007 0.43 -0.5 2,108,210 + HP15_2007 0.48 +0.7 2,108,216 + HP15_2007 0.49 -0.4 2,108,216 + HP15_2007 0.49 +0.6 2,108,256 - HP15_2007 0.53 +0.3 2,108,268 - HP15_2007 0.54 +0.1 2,108,347 + HP15_2007 0.61 +0.0 2,108,348 - HP15_2007 0.61 +1.2 2,108,386 + HP15_2007 0.64 +0.3 2,108,416 - HP15_2007 0.67 -0.4 2,108,433 - HP15_2007 0.68 -0.3
Or see this region's nucleotide sequence