Strain Fitness in Marinobacter adhaerens HP15 around HP15_2005

Experiment: m.b. Furfuryl Alcohol 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2001 and HP15_2002 are separated by 12 nucleotidesHP15_2002 and HP15_2003 overlap by 4 nucleotidesHP15_2003 and HP15_2004 overlap by 1 nucleotidesHP15_2004 and HP15_2005 are separated by 34 nucleotidesHP15_2005 and HP15_2006 are separated by 13 nucleotidesHP15_2006 and HP15_2007 overlap by 1 nucleotides HP15_2001: HP15_2001 - hypothetical protein, at 2,105,777 to 2,106,061 _2001 HP15_2002: HP15_2002 - conserved hypothetical protein, at 2,106,074 to 2,106,415 _2002 HP15_2003: HP15_2003 - hypothetical protein, at 2,106,412 to 2,106,843 _2003 HP15_2004: HP15_2004 - membrane or secreted protein, at 2,106,843 to 2,106,971 _2004 HP15_2005: HP15_2005 - hypothetical protein, at 2,107,006 to 2,107,449 _2005 HP15_2006: HP15_2006 - hypothetical protein, at 2,107,463 to 2,107,666 _2006 HP15_2007: HP15_2007 - prophage lambda integrase, at 2,107,666 to 2,108,787 _2007 Position (kb) 2107 2108Strain fitness (log2 ratio) -1 0 1at 2106.089 kb on - strandat 2106.277 kb on + strand, within HP15_2002at 2106.295 kb on + strand, within HP15_2002at 2106.365 kb on + strand, within HP15_2002at 2106.416 kb on - strandat 2106.650 kb on - strand, within HP15_2003at 2106.741 kb on - strand, within HP15_2003at 2106.966 kb on + strandat 2107.090 kb on - strand, within HP15_2005at 2107.218 kb on - strandat 2107.270 kb on - strand, within HP15_2005at 2107.329 kb on + strand, within HP15_2005at 2107.344 kb on - strand, within HP15_2005at 2107.468 kb on - strandat 2107.471 kb on + strandat 2107.471 kb on + strandat 2107.527 kb on + strand, within HP15_2006at 2107.535 kb on - strand, within HP15_2006at 2107.588 kb on + strand, within HP15_2006at 2108.039 kb on - strand, within HP15_2007at 2108.093 kb on + strand, within HP15_2007at 2108.134 kb on + strand, within HP15_2007at 2108.143 kb on - strand, within HP15_2007at 2108.210 kb on + strand, within HP15_2007at 2108.216 kb on + strand, within HP15_2007at 2108.216 kb on + strand, within HP15_2007at 2108.256 kb on - strand, within HP15_2007at 2108.268 kb on - strand, within HP15_2007at 2108.347 kb on + strand, within HP15_2007at 2108.348 kb on - strand, within HP15_2007at 2108.386 kb on + strand, within HP15_2007at 2108.416 kb on - strand, within HP15_2007at 2108.433 kb on - strand, within HP15_2007

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.125 vol%
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2,106,089 - +0.1
2,106,277 + HP15_2002 0.59 -0.3
2,106,295 + HP15_2002 0.65 +0.5
2,106,365 + HP15_2002 0.85 +0.4
2,106,416 - -0.1
2,106,650 - HP15_2003 0.55 +0.4
2,106,741 - HP15_2003 0.76 -0.1
2,106,966 + -0.1
2,107,090 - HP15_2005 0.19 -1.0
2,107,218 - -0.3
2,107,270 - HP15_2005 0.59 -0.5
2,107,329 + HP15_2005 0.73 -0.9
2,107,344 - HP15_2005 0.76 -1.2
2,107,468 - +0.1
2,107,471 + +0.4
2,107,471 + +0.0
2,107,527 + HP15_2006 0.31 +0.1
2,107,535 - HP15_2006 0.35 -0.3
2,107,588 + HP15_2006 0.61 -0.8
2,108,039 - HP15_2007 0.33 +0.1
2,108,093 + HP15_2007 0.38 +0.3
2,108,134 + HP15_2007 0.42 -0.1
2,108,143 - HP15_2007 0.43 -0.5
2,108,210 + HP15_2007 0.48 +0.7
2,108,216 + HP15_2007 0.49 -0.4
2,108,216 + HP15_2007 0.49 +0.6
2,108,256 - HP15_2007 0.53 +0.3
2,108,268 - HP15_2007 0.54 +0.1
2,108,347 + HP15_2007 0.61 +0.0
2,108,348 - HP15_2007 0.61 +1.2
2,108,386 + HP15_2007 0.64 +0.3
2,108,416 - HP15_2007 0.67 -0.4
2,108,433 - HP15_2007 0.68 -0.3

Or see this region's nucleotide sequence