Strain Fitness in Marinobacter adhaerens HP15 around HP15_rRNA9

Experiment: m.b. Furfuryl Alcohol 0.125 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_rRNA8 and HP15_rRNA9 are separated by 101 nucleotidesHP15_rRNA9 and HP15_1247 are separated by 66 nucleotidesHP15_1247 and HP15_1248 overlap by 4 nucleotides HP15_rRNA8: HP15_rRNA8 - 23S ribosomal RNA, at 1,301,060 to 1,303,951 _rRNA8 HP15_rRNA9: HP15_rRNA9 - 5S ribosomal RNA, at 1,304,053 to 1,304,166 _rRNA9 HP15_1247: HP15_1247 - signal transduction histidine kinase, at 1,304,233 to 1,304,913 _1247 HP15_1248: HP15_1248 - response regulator/TPR domain protein, at 1,304,910 to 1,306,547 _1248 Position (kb) 1304 1305Strain fitness (log2 ratio) -1 0 1 2at 1304.231 kb on + strandat 1304.442 kb on + strand, within HP15_1247at 1304.519 kb on - strand, within HP15_1247at 1304.528 kb on + strand, within HP15_1247at 1304.627 kb on - strand, within HP15_1247at 1304.661 kb on + strand, within HP15_1247at 1304.828 kb on + strand, within HP15_1247at 1305.037 kb on + strandat 1305.065 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.125 vol%
remove
1,304,231 + -0.3
1,304,442 + HP15_1247 0.31 +1.9
1,304,519 - HP15_1247 0.42 -0.1
1,304,528 + HP15_1247 0.43 -1.3
1,304,627 - HP15_1247 0.58 -0.5
1,304,661 + HP15_1247 0.63 -1.0
1,304,828 + HP15_1247 0.87 +0.1
1,305,037 + -0.3
1,305,065 - -0.4

Or see this region's nucleotide sequence