Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3765.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3765.1 and Xcc-8004.3766.1 are separated by 48 nucleotidesXcc-8004.3766.1 and Xcc-8004.3767.1 are separated by 64 nucleotides Xcc-8004.3765.1: Xcc-8004.3765.1 - LSU ribosomal protein L19p, at 3,640,830 to 3,641,333 Xcc-8004.3765.1 Xcc-8004.3766.1: Xcc-8004.3766.1 - tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31), at 3,641,382 to 3,642,140 Xcc-8004.3766.1 Xcc-8004.3767.1: Xcc-8004.3767.1 - 16S rRNA processing protein RimM, at 3,642,205 to 3,642,717 Xcc-8004.3767.1 Position (kb) 3640 3641 3642Strain fitness (log2 ratio) -2 -1 0 1at 3639.930 kb on - strandat 3639.930 kb on - strandat 3639.930 kb on - strandat 3640.043 kb on - strandat 3640.359 kb on + strandat 3640.359 kb on + strandat 3640.359 kb on + strandat 3640.359 kb on + strandat 3640.363 kb on + strandat 3640.363 kb on + strandat 3640.363 kb on + strandat 3640.609 kb on + strandat 3640.610 kb on - strandat 3640.665 kb on - strandat 3640.665 kb on - strandat 3640.665 kb on - strandat 3640.673 kb on + strandat 3640.831 kb on + strandat 3640.831 kb on + strandat 3640.831 kb on + strandat 3640.832 kb on - strandat 3641.346 kb on - strandat 3641.384 kb on - strandat 3641.384 kb on - strandat 3641.384 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
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3,639,930 - -1.2
3,639,930 - -2.2
3,639,930 - +0.5
3,640,043 - -1.6
3,640,359 + -2.1
3,640,359 + -0.7
3,640,359 + -0.7
3,640,359 + +0.5
3,640,363 + -0.2
3,640,363 + +0.3
3,640,363 + +0.8
3,640,609 + +0.5
3,640,610 - +1.3
3,640,665 - -0.3
3,640,665 - -0.8
3,640,665 - -0.6
3,640,673 + +0.0
3,640,831 + -0.2
3,640,831 + +0.2
3,640,831 + -2.3
3,640,832 - -0.1
3,641,346 - +0.3
3,641,384 - -2.1
3,641,384 - -1.0
3,641,384 - +0.1

Or see this region's nucleotide sequence