Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_739

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_738 and Pf6N2E2_739 are separated by 148 nucleotidesPf6N2E2_739 and Pf6N2E2_740 are separated by 312 nucleotides Pf6N2E2_738 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 846,266 to 847,885 _738 Pf6N2E2_739 - Putative hydroxycinnamate transporter, at 848,034 to 849,257 _739 Pf6N2E2_740 - Phenylacetic acid-specific porin; hydroxycinnamate specific porine, at 849,570 to 850,877 _740 Position (kb) 848 849 850Strain fitness (log2 ratio) -2 -1 0 1 2at 847.054 kb on + strand, within Pf6N2E2_738at 847.055 kb on - strand, within Pf6N2E2_738at 847.555 kb on + strand, within Pf6N2E2_738at 847.756 kb on + strandat 847.757 kb on - strandat 847.810 kb on + strandat 847.811 kb on - strandat 847.884 kb on - strandat 848.010 kb on + strandat 848.011 kb on - strandat 848.011 kb on - strandat 848.015 kb on - strandat 848.015 kb on - strandat 848.023 kb on + strandat 848.023 kb on + strandat 848.023 kb on + strandat 848.023 kb on + strandat 848.023 kb on + strandat 848.023 kb on + strandat 848.023 kb on + strandat 848.023 kb on + strandat 848.024 kb on - strandat 848.024 kb on - strandat 848.024 kb on - strandat 848.024 kb on - strandat 848.024 kb on - strandat 848.024 kb on - strandat 848.024 kb on - strandat 848.024 kb on - strandat 848.024 kb on - strandat 848.024 kb on - strandat 848.099 kb on + strandat 848.099 kb on + strandat 848.099 kb on + strandat 848.100 kb on - strandat 848.100 kb on - strandat 848.148 kb on + strandat 848.256 kb on + strand, within Pf6N2E2_739at 848.257 kb on - strand, within Pf6N2E2_739at 848.264 kb on + strand, within Pf6N2E2_739at 848.265 kb on - strand, within Pf6N2E2_739at 848.265 kb on - strand, within Pf6N2E2_739at 848.269 kb on + strand, within Pf6N2E2_739at 848.270 kb on - strand, within Pf6N2E2_739at 848.290 kb on + strand, within Pf6N2E2_739at 848.290 kb on + strand, within Pf6N2E2_739at 848.290 kb on + strand, within Pf6N2E2_739at 848.290 kb on + strand, within Pf6N2E2_739at 848.291 kb on - strand, within Pf6N2E2_739at 848.291 kb on - strand, within Pf6N2E2_739at 848.291 kb on - strand, within Pf6N2E2_739at 848.291 kb on - strand, within Pf6N2E2_739at 848.404 kb on + strand, within Pf6N2E2_739at 848.569 kb on + strand, within Pf6N2E2_739at 848.569 kb on + strand, within Pf6N2E2_739at 848.569 kb on + strand, within Pf6N2E2_739at 848.569 kb on + strand, within Pf6N2E2_739at 848.569 kb on + strand, within Pf6N2E2_739at 848.569 kb on + strand, within Pf6N2E2_739at 848.569 kb on + strand, within Pf6N2E2_739at 848.569 kb on + strand, within Pf6N2E2_739at 848.569 kb on + strand, within Pf6N2E2_739at 848.570 kb on - strand, within Pf6N2E2_739at 848.570 kb on - strand, within Pf6N2E2_739at 848.570 kb on - strand, within Pf6N2E2_739at 848.570 kb on - strand, within Pf6N2E2_739at 848.570 kb on - strand, within Pf6N2E2_739at 848.570 kb on - strand, within Pf6N2E2_739at 848.570 kb on - strand, within Pf6N2E2_739at 848.570 kb on - strand, within Pf6N2E2_739at 848.570 kb on - strand, within Pf6N2E2_739at 848.570 kb on - strand, within Pf6N2E2_739at 848.570 kb on - strand, within Pf6N2E2_739at 848.593 kb on + strand, within Pf6N2E2_739at 848.593 kb on + strand, within Pf6N2E2_739at 848.839 kb on + strand, within Pf6N2E2_739at 848.839 kb on + strand, within Pf6N2E2_739at 848.839 kb on + strand, within Pf6N2E2_739at 848.840 kb on - strand, within Pf6N2E2_739at 848.840 kb on - strand, within Pf6N2E2_739at 848.952 kb on + strand, within Pf6N2E2_739at 848.953 kb on - strand, within Pf6N2E2_739at 848.953 kb on - strand, within Pf6N2E2_739at 848.977 kb on + strand, within Pf6N2E2_739at 848.978 kb on - strand, within Pf6N2E2_739at 849.271 kb on - strandat 849.519 kb on + strandat 849.554 kb on + strandat 849.554 kb on + strandat 849.554 kb on + strandat 849.554 kb on + strandat 849.554 kb on + strandat 849.554 kb on + strandat 849.554 kb on + strandat 849.554 kb on + strandat 849.554 kb on + strandat 849.554 kb on + strandat 849.555 kb on - strandat 849.555 kb on - strandat 849.720 kb on + strand, within Pf6N2E2_740at 849.720 kb on + strand, within Pf6N2E2_740at 849.721 kb on - strand, within Pf6N2E2_740at 849.723 kb on + strand, within Pf6N2E2_740at 849.723 kb on + strand, within Pf6N2E2_740at 849.723 kb on + strand, within Pf6N2E2_740at 849.723 kb on + strand, within Pf6N2E2_740at 849.942 kb on + strand, within Pf6N2E2_740at 849.966 kb on - strand, within Pf6N2E2_740at 850.120 kb on - strand, within Pf6N2E2_740at 850.224 kb on + strand, within Pf6N2E2_740at 850.225 kb on - strand, within Pf6N2E2_740at 850.225 kb on - strand, within Pf6N2E2_740at 850.225 kb on - strand, within Pf6N2E2_740

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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847,054 + Pf6N2E2_738 0.49 -0.4
847,055 - Pf6N2E2_738 0.49 +0.5
847,555 + Pf6N2E2_738 0.80 -1.2
847,756 + -0.1
847,757 - -0.8
847,810 + +0.1
847,811 - -1.7
847,884 - -0.1
848,010 + +0.3
848,011 - +1.5
848,011 - -0.3
848,015 - -0.4
848,015 - +0.8
848,023 + -0.1
848,023 + +0.2
848,023 + +1.1
848,023 + +1.3
848,023 + +0.1
848,023 + -0.0
848,023 + +1.1
848,023 + -0.3
848,024 - +0.4
848,024 - -0.1
848,024 - +2.2
848,024 - -0.0
848,024 - +0.2
848,024 - +0.2
848,024 - -1.2
848,024 - +0.1
848,024 - -0.5
848,024 - -0.1
848,099 + -1.0
848,099 + -0.1
848,099 + -0.2
848,100 - -0.9
848,100 - +0.3
848,148 + -0.4
848,256 + Pf6N2E2_739 0.18 -1.4
848,257 - Pf6N2E2_739 0.18 -0.0
848,264 + Pf6N2E2_739 0.19 -0.6
848,265 - Pf6N2E2_739 0.19 +0.6
848,265 - Pf6N2E2_739 0.19 -0.4
848,269 + Pf6N2E2_739 0.19 -0.3
848,270 - Pf6N2E2_739 0.19 -0.4
848,290 + Pf6N2E2_739 0.21 -0.8
848,290 + Pf6N2E2_739 0.21 -0.1
848,290 + Pf6N2E2_739 0.21 +0.6
848,290 + Pf6N2E2_739 0.21 +0.7
848,291 - Pf6N2E2_739 0.21 -0.4
848,291 - Pf6N2E2_739 0.21 +0.3
848,291 - Pf6N2E2_739 0.21 +0.3
848,291 - Pf6N2E2_739 0.21 +0.5
848,404 + Pf6N2E2_739 0.30 -0.1
848,569 + Pf6N2E2_739 0.44 +0.2
848,569 + Pf6N2E2_739 0.44 -1.1
848,569 + Pf6N2E2_739 0.44 -0.6
848,569 + Pf6N2E2_739 0.44 -1.5
848,569 + Pf6N2E2_739 0.44 -1.4
848,569 + Pf6N2E2_739 0.44 -1.7
848,569 + Pf6N2E2_739 0.44 +0.6
848,569 + Pf6N2E2_739 0.44 -2.2
848,569 + Pf6N2E2_739 0.44 +0.6
848,570 - Pf6N2E2_739 0.44 -0.9
848,570 - Pf6N2E2_739 0.44 -1.0
848,570 - Pf6N2E2_739 0.44 +1.4
848,570 - Pf6N2E2_739 0.44 -1.5
848,570 - Pf6N2E2_739 0.44 +1.3
848,570 - Pf6N2E2_739 0.44 -0.8
848,570 - Pf6N2E2_739 0.44 -1.0
848,570 - Pf6N2E2_739 0.44 +0.3
848,570 - Pf6N2E2_739 0.44 +0.3
848,570 - Pf6N2E2_739 0.44 +0.5
848,570 - Pf6N2E2_739 0.44 -0.2
848,593 + Pf6N2E2_739 0.46 +0.2
848,593 + Pf6N2E2_739 0.46 +0.2
848,839 + Pf6N2E2_739 0.66 -1.6
848,839 + Pf6N2E2_739 0.66 -0.1
848,839 + Pf6N2E2_739 0.66 +1.0
848,840 - Pf6N2E2_739 0.66 -1.0
848,840 - Pf6N2E2_739 0.66 -0.8
848,952 + Pf6N2E2_739 0.75 +0.1
848,953 - Pf6N2E2_739 0.75 +0.8
848,953 - Pf6N2E2_739 0.75 +0.3
848,977 + Pf6N2E2_739 0.77 -0.6
848,978 - Pf6N2E2_739 0.77 +0.9
849,271 - +0.6
849,519 + -1.0
849,554 + +0.8
849,554 + -0.2
849,554 + -0.4
849,554 + -0.3
849,554 + +1.2
849,554 + +0.6
849,554 + +1.2
849,554 + +0.0
849,554 + -0.2
849,554 + -2.5
849,555 - -0.0
849,555 - -1.2
849,720 + Pf6N2E2_740 0.11 -0.6
849,720 + Pf6N2E2_740 0.11 -0.3
849,721 - Pf6N2E2_740 0.12 -0.7
849,723 + Pf6N2E2_740 0.12 +0.6
849,723 + Pf6N2E2_740 0.12 +0.3
849,723 + Pf6N2E2_740 0.12 +0.0
849,723 + Pf6N2E2_740 0.12 -0.4
849,942 + Pf6N2E2_740 0.28 +0.1
849,966 - Pf6N2E2_740 0.30 -1.0
850,120 - Pf6N2E2_740 0.42 -0.2
850,224 + Pf6N2E2_740 0.50 -0.1
850,225 - Pf6N2E2_740 0.50 +1.2
850,225 - Pf6N2E2_740 0.50 +1.3
850,225 - Pf6N2E2_740 0.50 +0.8

Or see this region's nucleotide sequence