Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3824

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3822 and Pf6N2E2_3823 are separated by 103 nucleotidesPf6N2E2_3823 and Pf6N2E2_3824 overlap by 4 nucleotidesPf6N2E2_3824 and Pf6N2E2_3825 are separated by 254 nucleotides Pf6N2E2_3822 - Periplasmic chorismate mutase I precursor (EC 5.4.99.5), at 4,457,804 to 4,458,367 _3822 Pf6N2E2_3823 - FIG00956533: hypothetical protein, at 4,458,471 to 4,458,989 _3823 Pf6N2E2_3824 - FIG00953806: hypothetical protein, at 4,458,986 to 4,459,609 _3824 Pf6N2E2_3825 - Nitrogen regulation protein NtrB (EC 2.7.13.3), at 4,459,864 to 4,460,949 _3825 Position (kb) 4458 4459 4460Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4458.038 kb on + strand, within Pf6N2E2_3822at 4458.039 kb on - strand, within Pf6N2E2_3822at 4458.039 kb on - strand, within Pf6N2E2_3822at 4458.084 kb on + strand, within Pf6N2E2_3822at 4458.084 kb on + strand, within Pf6N2E2_3822at 4458.084 kb on + strand, within Pf6N2E2_3822at 4458.085 kb on - strand, within Pf6N2E2_3822at 4458.085 kb on - strand, within Pf6N2E2_3822at 4458.085 kb on - strand, within Pf6N2E2_3822at 4458.107 kb on + strand, within Pf6N2E2_3822at 4458.107 kb on + strand, within Pf6N2E2_3822at 4458.107 kb on + strand, within Pf6N2E2_3822at 4458.107 kb on + strand, within Pf6N2E2_3822at 4458.107 kb on + strand, within Pf6N2E2_3822at 4458.108 kb on - strand, within Pf6N2E2_3822at 4458.108 kb on - strand, within Pf6N2E2_3822at 4458.108 kb on - strand, within Pf6N2E2_3822at 4458.108 kb on - strand, within Pf6N2E2_3822at 4458.108 kb on - strand, within Pf6N2E2_3822at 4458.108 kb on - strand, within Pf6N2E2_3822at 4458.108 kb on - strand, within Pf6N2E2_3822at 4458.395 kb on + strandat 4458.395 kb on + strandat 4458.395 kb on + strandat 4458.396 kb on - strandat 4458.396 kb on - strandat 4458.432 kb on + strandat 4458.432 kb on + strandat 4458.432 kb on + strandat 4458.432 kb on + strandat 4458.432 kb on + strandat 4458.432 kb on + strandat 4458.433 kb on - strandat 4458.433 kb on - strandat 4458.433 kb on - strandat 4458.433 kb on - strandat 4458.433 kb on - strandat 4458.534 kb on + strand, within Pf6N2E2_3823at 4458.534 kb on + strand, within Pf6N2E2_3823at 4458.534 kb on + strand, within Pf6N2E2_3823at 4458.534 kb on + strand, within Pf6N2E2_3823at 4458.534 kb on + strand, within Pf6N2E2_3823at 4458.534 kb on + strand, within Pf6N2E2_3823at 4458.535 kb on - strand, within Pf6N2E2_3823at 4458.535 kb on - strand, within Pf6N2E2_3823at 4458.540 kb on + strand, within Pf6N2E2_3823at 4458.540 kb on + strand, within Pf6N2E2_3823at 4458.541 kb on - strand, within Pf6N2E2_3823at 4458.541 kb on - strand, within Pf6N2E2_3823at 4458.541 kb on - strand, within Pf6N2E2_3823at 4458.541 kb on - strand, within Pf6N2E2_3823at 4458.567 kb on + strand, within Pf6N2E2_3823at 4458.567 kb on + strand, within Pf6N2E2_3823at 4458.567 kb on + strand, within Pf6N2E2_3823at 4458.567 kb on + strand, within Pf6N2E2_3823at 4458.568 kb on - strand, within Pf6N2E2_3823at 4458.702 kb on + strand, within Pf6N2E2_3823at 4458.703 kb on - strand, within Pf6N2E2_3823at 4458.703 kb on - strand, within Pf6N2E2_3823at 4458.709 kb on + strand, within Pf6N2E2_3823at 4458.710 kb on - strand, within Pf6N2E2_3823at 4458.840 kb on + strand, within Pf6N2E2_3823at 4458.841 kb on - strand, within Pf6N2E2_3823at 4459.049 kb on + strand, within Pf6N2E2_3824at 4459.049 kb on + strand, within Pf6N2E2_3824at 4459.049 kb on + strand, within Pf6N2E2_3824at 4459.049 kb on + strand, within Pf6N2E2_3824at 4459.049 kb on + strand, within Pf6N2E2_3824at 4459.049 kb on + strand, within Pf6N2E2_3824at 4459.049 kb on + strand, within Pf6N2E2_3824at 4459.049 kb on + strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.050 kb on - strand, within Pf6N2E2_3824at 4459.051 kb on + strand, within Pf6N2E2_3824at 4459.051 kb on + strand, within Pf6N2E2_3824at 4459.051 kb on + strand, within Pf6N2E2_3824at 4459.051 kb on + strand, within Pf6N2E2_3824at 4459.051 kb on + strand, within Pf6N2E2_3824at 4459.052 kb on - strand, within Pf6N2E2_3824at 4459.052 kb on - strand, within Pf6N2E2_3824at 4459.052 kb on - strand, within Pf6N2E2_3824at 4459.052 kb on - strand, within Pf6N2E2_3824at 4459.052 kb on - strand, within Pf6N2E2_3824at 4459.055 kb on + strand, within Pf6N2E2_3824at 4459.055 kb on + strand, within Pf6N2E2_3824at 4459.055 kb on + strand, within Pf6N2E2_3824at 4459.055 kb on + strand, within Pf6N2E2_3824at 4459.055 kb on + strand, within Pf6N2E2_3824at 4459.055 kb on + strand, within Pf6N2E2_3824at 4459.055 kb on + strand, within Pf6N2E2_3824at 4459.055 kb on + strand, within Pf6N2E2_3824at 4459.056 kb on - strand, within Pf6N2E2_3824at 4459.056 kb on - strand, within Pf6N2E2_3824at 4459.056 kb on - strand, within Pf6N2E2_3824at 4459.056 kb on - strand, within Pf6N2E2_3824at 4459.119 kb on + strand, within Pf6N2E2_3824at 4459.119 kb on + strand, within Pf6N2E2_3824at 4459.119 kb on + strand, within Pf6N2E2_3824at 4459.120 kb on - strand, within Pf6N2E2_3824at 4459.120 kb on - strand, within Pf6N2E2_3824at 4459.120 kb on - strand, within Pf6N2E2_3824at 4459.120 kb on - strand, within Pf6N2E2_3824at 4459.420 kb on - strand, within Pf6N2E2_3824at 4459.477 kb on + strand, within Pf6N2E2_3824at 4459.477 kb on + strand, within Pf6N2E2_3824at 4459.478 kb on - strand, within Pf6N2E2_3824at 4459.631 kb on - strandat 4459.631 kb on - strandat 4459.633 kb on - strandat 4459.796 kb on - strandat 4459.806 kb on + strandat 4459.806 kb on + strandat 4459.843 kb on + strandat 4459.844 kb on - strandat 4459.844 kb on - strandat 4459.844 kb on - strandat 4459.844 kb on - strandat 4459.873 kb on - strandat 4459.883 kb on + strandat 4459.883 kb on + strandat 4459.883 kb on + strandat 4459.884 kb on - strandat 4459.884 kb on - strandat 4459.951 kb on + strandat 4460.143 kb on + strand, within Pf6N2E2_3825at 4460.144 kb on - strand, within Pf6N2E2_3825at 4460.221 kb on - strand, within Pf6N2E2_3825at 4460.372 kb on - strand, within Pf6N2E2_3825at 4460.372 kb on - strand, within Pf6N2E2_3825at 4460.542 kb on + strand, within Pf6N2E2_3825at 4460.542 kb on + strand, within Pf6N2E2_3825at 4460.543 kb on - strand, within Pf6N2E2_3825

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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4,458,038 + Pf6N2E2_3822 0.41 +0.7
4,458,039 - Pf6N2E2_3822 0.42 +0.1
4,458,039 - Pf6N2E2_3822 0.42 -1.1
4,458,084 + Pf6N2E2_3822 0.50 +1.7
4,458,084 + Pf6N2E2_3822 0.50 +0.2
4,458,084 + Pf6N2E2_3822 0.50 -0.3
4,458,085 - Pf6N2E2_3822 0.50 +0.3
4,458,085 - Pf6N2E2_3822 0.50 +0.2
4,458,085 - Pf6N2E2_3822 0.50 +0.4
4,458,107 + Pf6N2E2_3822 0.54 +0.6
4,458,107 + Pf6N2E2_3822 0.54 -1.1
4,458,107 + Pf6N2E2_3822 0.54 +0.9
4,458,107 + Pf6N2E2_3822 0.54 -0.1
4,458,107 + Pf6N2E2_3822 0.54 -0.3
4,458,108 - Pf6N2E2_3822 0.54 +0.9
4,458,108 - Pf6N2E2_3822 0.54 -0.8
4,458,108 - Pf6N2E2_3822 0.54 +0.2
4,458,108 - Pf6N2E2_3822 0.54 +0.9
4,458,108 - Pf6N2E2_3822 0.54 -0.2
4,458,108 - Pf6N2E2_3822 0.54 -0.2
4,458,108 - Pf6N2E2_3822 0.54 -0.4
4,458,395 + +0.2
4,458,395 + +1.5
4,458,395 + -0.5
4,458,396 - +0.4
4,458,396 - -0.2
4,458,432 + +0.2
4,458,432 + +0.1
4,458,432 + +0.7
4,458,432 + +0.3
4,458,432 + -0.2
4,458,432 + +1.6
4,458,433 - -0.4
4,458,433 - +0.8
4,458,433 - +0.9
4,458,433 - +0.1
4,458,433 - +0.1
4,458,534 + Pf6N2E2_3823 0.12 +0.6
4,458,534 + Pf6N2E2_3823 0.12 +0.2
4,458,534 + Pf6N2E2_3823 0.12 -0.1
4,458,534 + Pf6N2E2_3823 0.12 +0.9
4,458,534 + Pf6N2E2_3823 0.12 +0.4
4,458,534 + Pf6N2E2_3823 0.12 -0.1
4,458,535 - Pf6N2E2_3823 0.12 -1.1
4,458,535 - Pf6N2E2_3823 0.12 +1.0
4,458,540 + Pf6N2E2_3823 0.13 +0.5
4,458,540 + Pf6N2E2_3823 0.13 +0.9
4,458,541 - Pf6N2E2_3823 0.13 +1.0
4,458,541 - Pf6N2E2_3823 0.13 +0.1
4,458,541 - Pf6N2E2_3823 0.13 +0.4
4,458,541 - Pf6N2E2_3823 0.13 -2.3
4,458,567 + Pf6N2E2_3823 0.18 +0.7
4,458,567 + Pf6N2E2_3823 0.18 -0.2
4,458,567 + Pf6N2E2_3823 0.18 -2.3
4,458,567 + Pf6N2E2_3823 0.18 +1.3
4,458,568 - Pf6N2E2_3823 0.19 +1.2
4,458,702 + Pf6N2E2_3823 0.45 +1.4
4,458,703 - Pf6N2E2_3823 0.45 -0.0
4,458,703 - Pf6N2E2_3823 0.45 -0.9
4,458,709 + Pf6N2E2_3823 0.46 -1.0
4,458,710 - Pf6N2E2_3823 0.46 +0.9
4,458,840 + Pf6N2E2_3823 0.71 -0.5
4,458,841 - Pf6N2E2_3823 0.71 +0.9
4,459,049 + Pf6N2E2_3824 0.10 +0.4
4,459,049 + Pf6N2E2_3824 0.10 +0.3
4,459,049 + Pf6N2E2_3824 0.10 +0.9
4,459,049 + Pf6N2E2_3824 0.10 +0.7
4,459,049 + Pf6N2E2_3824 0.10 +0.1
4,459,049 + Pf6N2E2_3824 0.10 -0.3
4,459,049 + Pf6N2E2_3824 0.10 +2.3
4,459,049 + Pf6N2E2_3824 0.10 -0.1
4,459,050 - Pf6N2E2_3824 0.10 -0.2
4,459,050 - Pf6N2E2_3824 0.10 +1.2
4,459,050 - Pf6N2E2_3824 0.10 +1.6
4,459,050 - Pf6N2E2_3824 0.10 +0.9
4,459,050 - Pf6N2E2_3824 0.10 -0.3
4,459,050 - Pf6N2E2_3824 0.10 +0.1
4,459,050 - Pf6N2E2_3824 0.10 +0.4
4,459,050 - Pf6N2E2_3824 0.10 -0.3
4,459,050 - Pf6N2E2_3824 0.10 +1.6
4,459,050 - Pf6N2E2_3824 0.10 -0.6
4,459,050 - Pf6N2E2_3824 0.10 +0.7
4,459,050 - Pf6N2E2_3824 0.10 +0.9
4,459,051 + Pf6N2E2_3824 0.10 +0.7
4,459,051 + Pf6N2E2_3824 0.10 +0.7
4,459,051 + Pf6N2E2_3824 0.10 -0.5
4,459,051 + Pf6N2E2_3824 0.10 +0.6
4,459,051 + Pf6N2E2_3824 0.10 +1.0
4,459,052 - Pf6N2E2_3824 0.11 +0.1
4,459,052 - Pf6N2E2_3824 0.11 +1.0
4,459,052 - Pf6N2E2_3824 0.11 +0.6
4,459,052 - Pf6N2E2_3824 0.11 +0.2
4,459,052 - Pf6N2E2_3824 0.11 -1.3
4,459,055 + Pf6N2E2_3824 0.11 +1.2
4,459,055 + Pf6N2E2_3824 0.11 +0.2
4,459,055 + Pf6N2E2_3824 0.11 +0.6
4,459,055 + Pf6N2E2_3824 0.11 +0.1
4,459,055 + Pf6N2E2_3824 0.11 -0.2
4,459,055 + Pf6N2E2_3824 0.11 +0.4
4,459,055 + Pf6N2E2_3824 0.11 -1.4
4,459,055 + Pf6N2E2_3824 0.11 +1.2
4,459,056 - Pf6N2E2_3824 0.11 +0.5
4,459,056 - Pf6N2E2_3824 0.11 +1.7
4,459,056 - Pf6N2E2_3824 0.11 -0.0
4,459,056 - Pf6N2E2_3824 0.11 +1.1
4,459,119 + Pf6N2E2_3824 0.21 -0.3
4,459,119 + Pf6N2E2_3824 0.21 +0.5
4,459,119 + Pf6N2E2_3824 0.21 -0.0
4,459,120 - Pf6N2E2_3824 0.21 +0.8
4,459,120 - Pf6N2E2_3824 0.21 +2.0
4,459,120 - Pf6N2E2_3824 0.21 +0.5
4,459,120 - Pf6N2E2_3824 0.21 +0.6
4,459,420 - Pf6N2E2_3824 0.70 +1.0
4,459,477 + Pf6N2E2_3824 0.79 -1.5
4,459,477 + Pf6N2E2_3824 0.79 -0.6
4,459,478 - Pf6N2E2_3824 0.79 +1.7
4,459,631 - +0.1
4,459,631 - +1.3
4,459,633 - +1.3
4,459,796 - -2.2
4,459,806 + -2.9
4,459,806 + -3.9
4,459,843 + -3.1
4,459,844 - -1.3
4,459,844 - -0.9
4,459,844 - -3.3
4,459,844 - -1.2
4,459,873 - -1.2
4,459,883 + +1.7
4,459,883 + -1.7
4,459,883 + -4.0
4,459,884 - -1.9
4,459,884 - -2.0
4,459,951 + -3.0
4,460,143 + Pf6N2E2_3825 0.26 -4.6
4,460,144 - Pf6N2E2_3825 0.26 -1.6
4,460,221 - Pf6N2E2_3825 0.33 -2.1
4,460,372 - Pf6N2E2_3825 0.47 -2.6
4,460,372 - Pf6N2E2_3825 0.47 -3.8
4,460,542 + Pf6N2E2_3825 0.62 -3.0
4,460,542 + Pf6N2E2_3825 0.62 -1.6
4,460,543 - Pf6N2E2_3825 0.63 -0.4

Or see this region's nucleotide sequence