Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0005

Experiment: Pyruvate-Sulfate (60-15mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0004 and DVUA0005 are separated by 654 nucleotidesDVUA0005 and mgtE are separated by 22 nucleotides DVUA0004: DVUA0004 - DNA-binding protein HU, putative (TIGR), at 5,490 to 5,843 DVUA0004 DVUA0005: DVUA0005 - universal stress protein family (TIGR), at 6,498 to 7,433 DVUA0005 DVUA0006: mgtE - magnesium transporter MgtE, putative (TIGR), at 7,456 to 8,451 mgtE Position (kb) 6 7 8Strain fitness (log2 ratio) -2 -1 0 1at 5.907 kb on - strandat 5.935 kb on - strandat 5.985 kb on + strandat 6.079 kb on + strandat 6.200 kb on + strandat 6.208 kb on - strandat 6.208 kb on - strandat 6.209 kb on - strandat 6.271 kb on + strandat 6.306 kb on + strandat 6.314 kb on - strandat 6.496 kb on + strandat 6.504 kb on - strandat 6.504 kb on - strandat 6.504 kb on - strandat 6.504 kb on - strandat 6.504 kb on - strandat 6.504 kb on - strandat 6.639 kb on + strand, within DVUA0005at 6.639 kb on - strand, within DVUA0005at 6.647 kb on - strand, within DVUA0005at 6.663 kb on + strand, within DVUA0005at 6.686 kb on + strand, within DVUA0005at 6.716 kb on - strand, within DVUA0005at 6.740 kb on + strand, within DVUA0005at 6.832 kb on + strand, within DVUA0005at 6.865 kb on - strand, within DVUA0005at 6.995 kb on + strand, within DVUA0005at 7.016 kb on + strand, within DVUA0005at 7.016 kb on + strand, within DVUA0005at 7.125 kb on + strand, within DVUA0005at 7.140 kb on - strand, within DVUA0005at 7.171 kb on + strand, within DVUA0005at 7.314 kb on - strand, within DVUA0005at 7.358 kb on + strandat 7.362 kb on + strandat 7.365 kb on - strandat 7.518 kb on + strandat 7.526 kb on - strandat 7.729 kb on - strand, within mgtEat 7.736 kb on + strand, within mgtEat 7.855 kb on - strand, within mgtEat 8.000 kb on - strand, within mgtEat 8.071 kb on + strand, within mgtEat 8.072 kb on - strand, within mgtEat 8.152 kb on + strand, within mgtEat 8.160 kb on - strand, within mgtEat 8.251 kb on - strand, within mgtEat 8.404 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Molybdate 100uM
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5,907 - -0.4
5,935 - -0.3
5,985 + +0.0
6,079 + -0.9
6,200 + -0.0
6,208 - -0.2
6,208 - -2.3
6,209 - -0.6
6,271 + -0.4
6,306 + +0.0
6,314 - +0.1
6,496 + -0.3
6,504 - -0.0
6,504 - -0.1
6,504 - +0.2
6,504 - +0.2
6,504 - -1.1
6,504 - +0.3
6,639 + DVUA0005 0.15 -0.2
6,639 - DVUA0005 0.15 -0.2
6,647 - DVUA0005 0.16 -1.0
6,663 + DVUA0005 0.18 +0.7
6,686 + DVUA0005 0.20 +0.1
6,716 - DVUA0005 0.23 -0.0
6,740 + DVUA0005 0.26 -0.0
6,832 + DVUA0005 0.36 +0.9
6,865 - DVUA0005 0.39 -0.2
6,995 + DVUA0005 0.53 -0.2
7,016 + DVUA0005 0.55 +0.1
7,016 + DVUA0005 0.55 +0.1
7,125 + DVUA0005 0.67 +0.8
7,140 - DVUA0005 0.69 -2.1
7,171 + DVUA0005 0.72 -0.7
7,314 - DVUA0005 0.87 -0.4
7,358 + +0.7
7,362 + -1.1
7,365 - +0.1
7,518 + +0.5
7,526 - -0.8
7,729 - mgtE DVUA0006 0.27 -0.4
7,736 + mgtE DVUA0006 0.28 -0.1
7,855 - mgtE DVUA0006 0.40 -0.5
8,000 - mgtE DVUA0006 0.55 -0.3
8,071 + mgtE DVUA0006 0.62 -0.1
8,072 - mgtE DVUA0006 0.62 -0.1
8,152 + mgtE DVUA0006 0.70 +0.9
8,160 - mgtE DVUA0006 0.71 -0.1
8,251 - mgtE DVUA0006 0.80 -0.5
8,404 - -0.9

Or see this region's nucleotide sequence