Experiment: Pyruvate-Sulfate (60-15mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0539 and DVU0540 overlap by 17 nucleotides DVU0540 and DVU0542 are separated by 297 nucleotides DVU0542 and DVU0543 are separated by 21 nucleotides
DVU0539: DVU0539 - sigma-54 dependent DNA-binding response regulator (TIGR), at 610,049 to 611,452
DVU0539
DVU0540: DVU0540 - sensor histidine kinase (TIGR), at 611,436 to 613,847
DVU0540
DVU0542: DVU0542 - universal stress protein family (TIGR), at 614,145 to 614,567
DVU0542
DVU0543: DVU0543 - conserved hypothetical protein (TIGR), at 614,589 to 615,698
DVU0543
Position (kb) 611
612
613
614 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 610.449 kb on + strand, within DVU0539 at 610.451 kb on + strand, within DVU0539 at 610.606 kb on - strand, within DVU0539 at 610.617 kb on - strand, within DVU0539 at 610.676 kb on + strand, within DVU0539 at 610.745 kb on - strand, within DVU0539 at 610.745 kb on - strand, within DVU0539 at 610.782 kb on + strand, within DVU0539 at 610.782 kb on + strand, within DVU0539 at 610.790 kb on - strand, within DVU0539 at 610.790 kb on - strand, within DVU0539 at 610.790 kb on - strand, within DVU0539 at 610.799 kb on - strand, within DVU0539 at 610.828 kb on + strand, within DVU0539 at 610.842 kb on + strand, within DVU0539 at 610.850 kb on - strand, within DVU0539 at 610.909 kb on - strand, within DVU0539 at 610.909 kb on - strand, within DVU0539 at 610.928 kb on + strand, within DVU0539 at 610.938 kb on + strand, within DVU0539 at 610.938 kb on + strand, within DVU0539 at 610.941 kb on - strand, within DVU0539 at 610.941 kb on - strand, within DVU0539 at 610.946 kb on - strand, within DVU0539 at 610.972 kb on + strand, within DVU0539 at 611.127 kb on - strand, within DVU0539 at 611.176 kb on + strand, within DVU0539 at 611.176 kb on + strand, within DVU0539 at 611.184 kb on - strand, within DVU0539 at 611.209 kb on + strand, within DVU0539 at 611.226 kb on + strand, within DVU0539 at 611.226 kb on + strand, within DVU0539 at 611.245 kb on + strand, within DVU0539 at 611.285 kb on - strand, within DVU0539 at 611.303 kb on + strand, within DVU0539 at 611.303 kb on + strand, within DVU0539 at 611.311 kb on - strand, within DVU0539 at 611.352 kb on - strand at 611.366 kb on + strand at 611.425 kb on + strand at 611.565 kb on + strand at 611.565 kb on + strand at 611.571 kb on - strand at 611.573 kb on - strand at 611.591 kb on - strand at 611.609 kb on + strand at 611.659 kb on - strand at 611.677 kb on - strand at 611.739 kb on - strand, within DVU0540 at 611.740 kb on - strand, within DVU0540 at 611.753 kb on + strand, within DVU0540 at 611.761 kb on - strand, within DVU0540 at 611.761 kb on - strand, within DVU0540 at 611.761 kb on - strand, within DVU0540 at 611.768 kb on + strand, within DVU0540 at 611.776 kb on - strand, within DVU0540 at 611.776 kb on - strand, within DVU0540 at 611.778 kb on + strand, within DVU0540 at 611.778 kb on + strand, within DVU0540 at 611.786 kb on - strand, within DVU0540 at 611.786 kb on - strand, within DVU0540 at 611.786 kb on - strand, within DVU0540 at 611.796 kb on - strand, within DVU0540 at 611.810 kb on + strand, within DVU0540 at 611.829 kb on - strand, within DVU0540 at 611.872 kb on + strand, within DVU0540 at 611.903 kb on - strand, within DVU0540 at 611.917 kb on + strand, within DVU0540 at 611.917 kb on + strand, within DVU0540 at 611.926 kb on - strand, within DVU0540 at 611.961 kb on + strand, within DVU0540 at 611.991 kb on - strand, within DVU0540 at 612.040 kb on + strand, within DVU0540 at 612.091 kb on + strand, within DVU0540 at 612.099 kb on + strand, within DVU0540 at 612.099 kb on - strand, within DVU0540 at 612.099 kb on - strand, within DVU0540 at 612.175 kb on - strand, within DVU0540 at 612.214 kb on + strand, within DVU0540 at 612.225 kb on + strand, within DVU0540 at 612.269 kb on - strand, within DVU0540 at 612.293 kb on + strand, within DVU0540 at 612.293 kb on + strand, within DVU0540 at 612.293 kb on + strand, within DVU0540 at 612.301 kb on - strand, within DVU0540 at 612.385 kb on + strand, within DVU0540 at 612.393 kb on + strand, within DVU0540 at 612.447 kb on - strand, within DVU0540 at 612.454 kb on + strand, within DVU0540 at 612.480 kb on - strand, within DVU0540 at 612.516 kb on + strand, within DVU0540 at 612.526 kb on - strand, within DVU0540 at 612.526 kb on - strand, within DVU0540 at 612.526 kb on - strand, within DVU0540 at 612.526 kb on - strand, within DVU0540 at 612.526 kb on - strand, within DVU0540 at 612.526 kb on - strand, within DVU0540 at 612.565 kb on - strand, within DVU0540 at 612.603 kb on + strand, within DVU0540 at 612.606 kb on + strand, within DVU0540 at 612.609 kb on - strand, within DVU0540 at 612.609 kb on - strand, within DVU0540 at 612.609 kb on - strand, within DVU0540 at 612.655 kb on + strand, within DVU0540 at 612.729 kb on + strand, within DVU0540 at 612.882 kb on - strand, within DVU0540 at 612.935 kb on - strand, within DVU0540 at 612.969 kb on + strand, within DVU0540 at 613.025 kb on + strand, within DVU0540 at 613.025 kb on + strand, within DVU0540 at 613.069 kb on + strand, within DVU0540 at 613.146 kb on - strand, within DVU0540 at 613.150 kb on + strand, within DVU0540 at 613.178 kb on - strand, within DVU0540 at 613.270 kb on + strand, within DVU0540 at 613.278 kb on - strand, within DVU0540 at 613.278 kb on - strand, within DVU0540 at 613.283 kb on - strand, within DVU0540 at 613.346 kb on + strand, within DVU0540 at 613.355 kb on - strand, within DVU0540 at 613.360 kb on + strand, within DVU0540 at 613.360 kb on + strand, within DVU0540 at 613.360 kb on + strand, within DVU0540 at 613.368 kb on - strand, within DVU0540 at 613.368 kb on - strand, within DVU0540 at 613.405 kb on - strand, within DVU0540 at 613.415 kb on - strand, within DVU0540 at 613.420 kb on - strand, within DVU0540 at 613.423 kb on + strand, within DVU0540 at 613.423 kb on + strand, within DVU0540 at 613.423 kb on + strand, within DVU0540 at 613.423 kb on + strand, within DVU0540 at 613.459 kb on - strand, within DVU0540 at 613.537 kb on + strand, within DVU0540 at 613.636 kb on + strand at 613.641 kb on + strand at 613.649 kb on - strand at 613.686 kb on - strand at 613.689 kb on + strand at 613.689 kb on + strand at 613.743 kb on - strand at 613.868 kb on + strand at 613.886 kb on + strand at 613.886 kb on + strand at 613.896 kb on - strand at 613.911 kb on - strand at 613.969 kb on + strand at 614.191 kb on - strand, within DVU0542 at 614.198 kb on - strand, within DVU0542 at 614.198 kb on - strand, within DVU0542 at 614.376 kb on + strand, within DVU0542 at 614.412 kb on + strand, within DVU0542 at 614.667 kb on - strand at 614.841 kb on - strand, within DVU0543
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Molybdate 100uM remove 610,449 + DVU0539 0.28 +0.7 610,451 + DVU0539 0.29 +1.0 610,606 - DVU0539 0.40 +0.4 610,617 - DVU0539 0.40 +0.7 610,676 + DVU0539 0.45 +0.2 610,745 - DVU0539 0.50 +0.3 610,745 - DVU0539 0.50 +1.1 610,782 + DVU0539 0.52 -0.1 610,782 + DVU0539 0.52 +1.1 610,790 - DVU0539 0.53 +1.4 610,790 - DVU0539 0.53 +1.3 610,790 - DVU0539 0.53 +1.1 610,799 - DVU0539 0.53 +0.5 610,828 + DVU0539 0.55 +0.3 610,842 + DVU0539 0.56 +0.4 610,850 - DVU0539 0.57 +0.9 610,909 - DVU0539 0.61 -4.2 610,909 - DVU0539 0.61 +0.6 610,928 + DVU0539 0.63 +0.6 610,938 + DVU0539 0.63 +0.4 610,938 + DVU0539 0.63 +0.2 610,941 - DVU0539 0.64 +0.5 610,941 - DVU0539 0.64 +0.8 610,946 - DVU0539 0.64 -0.2 610,972 + DVU0539 0.66 +0.1 611,127 - DVU0539 0.77 +0.7 611,176 + DVU0539 0.80 +0.7 611,176 + DVU0539 0.80 -3.1 611,184 - DVU0539 0.81 +0.7 611,209 + DVU0539 0.83 -0.4 611,226 + DVU0539 0.84 -0.1 611,226 + DVU0539 0.84 +0.4 611,245 + DVU0539 0.85 +0.5 611,285 - DVU0539 0.88 +0.0 611,303 + DVU0539 0.89 +0.1 611,303 + DVU0539 0.89 +0.3 611,311 - DVU0539 0.90 -0.9 611,352 - +1.2 611,366 + -1.1 611,425 + +0.3 611,565 + -1.9 611,565 + -1.9 611,571 - -0.8 611,573 - -3.2 611,591 - -3.5 611,609 + -2.9 611,659 - -1.8 611,677 - -2.5 611,739 - DVU0540 0.13 -2.3 611,740 - DVU0540 0.13 -3.9 611,753 + DVU0540 0.13 -3.4 611,761 - DVU0540 0.13 -2.0 611,761 - DVU0540 0.13 -2.8 611,761 - DVU0540 0.13 -1.0 611,768 + DVU0540 0.14 -2.6 611,776 - DVU0540 0.14 -1.2 611,776 - DVU0540 0.14 -2.7 611,778 + DVU0540 0.14 -1.9 611,778 + DVU0540 0.14 -2.3 611,786 - DVU0540 0.15 -1.9 611,786 - DVU0540 0.15 -1.9 611,786 - DVU0540 0.15 -1.8 611,796 - DVU0540 0.15 -2.9 611,810 + DVU0540 0.16 -0.7 611,829 - DVU0540 0.16 -2.6 611,872 + DVU0540 0.18 -1.2 611,903 - DVU0540 0.19 -2.5 611,917 + DVU0540 0.20 -1.4 611,917 + DVU0540 0.20 -2.2 611,926 - DVU0540 0.20 -1.1 611,961 + DVU0540 0.22 -1.4 611,991 - DVU0540 0.23 -1.3 612,040 + DVU0540 0.25 -1.0 612,091 + DVU0540 0.27 -0.9 612,099 + DVU0540 0.27 -0.3 612,099 - DVU0540 0.27 -0.5 612,099 - DVU0540 0.27 -2.8 612,175 - DVU0540 0.31 -3.3 612,214 + DVU0540 0.32 -2.5 612,225 + DVU0540 0.33 -3.0 612,269 - DVU0540 0.35 +0.1 612,293 + DVU0540 0.36 -0.7 612,293 + DVU0540 0.36 -1.2 612,293 + DVU0540 0.36 -0.4 612,301 - DVU0540 0.36 -3.0 612,385 + DVU0540 0.39 -1.7 612,393 + DVU0540 0.40 -1.6 612,447 - DVU0540 0.42 -2.7 612,454 + DVU0540 0.42 -2.3 612,480 - DVU0540 0.43 -1.4 612,516 + DVU0540 0.45 -1.5 612,526 - DVU0540 0.45 -1.8 612,526 - DVU0540 0.45 -0.8 612,526 - DVU0540 0.45 -0.9 612,526 - DVU0540 0.45 -2.2 612,526 - DVU0540 0.45 -0.3 612,526 - DVU0540 0.45 -0.3 612,565 - DVU0540 0.47 -0.7 612,603 + DVU0540 0.48 -1.1 612,606 + DVU0540 0.49 -0.8 612,609 - DVU0540 0.49 -1.0 612,609 - DVU0540 0.49 +0.6 612,609 - DVU0540 0.49 -1.8 612,655 + DVU0540 0.51 -1.6 612,729 + DVU0540 0.54 -2.4 612,882 - DVU0540 0.60 -2.8 612,935 - DVU0540 0.62 +0.2 612,969 + DVU0540 0.64 -1.3 613,025 + DVU0540 0.66 -0.8 613,025 + DVU0540 0.66 -1.3 613,069 + DVU0540 0.68 -1.3 613,146 - DVU0540 0.71 -2.4 613,150 + DVU0540 0.71 -0.9 613,178 - DVU0540 0.72 -2.9 613,270 + DVU0540 0.76 -1.7 613,278 - DVU0540 0.76 -1.6 613,278 - DVU0540 0.76 -1.2 613,283 - DVU0540 0.77 -0.6 613,346 + DVU0540 0.79 -1.7 613,355 - DVU0540 0.80 -1.4 613,360 + DVU0540 0.80 -3.1 613,360 + DVU0540 0.80 -3.4 613,360 + DVU0540 0.80 -3.0 613,368 - DVU0540 0.80 -2.1 613,368 - DVU0540 0.80 -2.0 613,405 - DVU0540 0.82 -2.5 613,415 - DVU0540 0.82 -1.6 613,420 - DVU0540 0.82 -2.2 613,423 + DVU0540 0.82 -0.7 613,423 + DVU0540 0.82 -2.5 613,423 + DVU0540 0.82 -2.2 613,423 + DVU0540 0.82 -1.7 613,459 - DVU0540 0.84 -1.7 613,537 + DVU0540 0.87 -2.9 613,636 + -1.1 613,641 + -1.7 613,649 - -2.4 613,686 - -1.7 613,689 + -2.0 613,689 + -2.4 613,743 - -2.8 613,868 + -2.2 613,886 + -2.2 613,886 + -3.0 613,896 - -0.5 613,911 - -1.4 613,969 + -3.4 614,191 - DVU0542 0.11 -2.0 614,198 - DVU0542 0.13 -1.8 614,198 - DVU0542 0.13 -1.7 614,376 + DVU0542 0.55 -0.1 614,412 + DVU0542 0.63 -2.7 614,667 - +1.0 614,841 - DVU0543 0.23 +2.0
Or see this region's nucleotide sequence