Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0493

Experiment: Pyruvate-Sulfate (60-15mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntargC and DVU0493 are separated by 9 nucleotidesDVU0493 and DVU0494 are separated by 65 nucleotides DVU0492: argC - N-acetyl-gamma-glutamyl-phosphate reductase (TIGR), at 561,263 to 562,327 argC DVU0493: DVU0493 - hypothetical protein (TIGR), at 562,337 to 562,645 DVU0493 DVU0494: DVU0494 - aminotransferase, class V (TIGR), at 562,711 to 563,880 DVU0494 Position (kb) 562 563Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 561.521 kb on - strand, within argCat 561.582 kb on - strand, within argCat 561.700 kb on + strand, within argCat 561.708 kb on - strand, within argCat 561.709 kb on - strand, within argCat 561.719 kb on + strand, within argCat 561.727 kb on - strand, within argCat 561.737 kb on - strand, within argCat 561.830 kb on - strand, within argCat 561.832 kb on - strand, within argCat 561.841 kb on + strand, within argCat 561.858 kb on - strand, within argCat 561.885 kb on + strand, within argCat 561.944 kb on - strand, within argCat 561.959 kb on + strand, within argCat 562.163 kb on + strand, within argCat 562.182 kb on + strand, within argCat 562.190 kb on - strand, within argCat 562.324 kb on + strandat 562.379 kb on - strand, within DVU0493at 562.425 kb on + strand, within DVU0493at 562.475 kb on - strand, within DVU0493at 562.625 kb on + strandat 562.641 kb on + strandat 562.655 kb on + strandat 562.700 kb on + strandat 562.708 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Molybdate 100uM
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561,521 - argC DVU0492 0.24 -2.5
561,582 - argC DVU0492 0.30 -0.7
561,700 + argC DVU0492 0.41 -4.6
561,708 - argC DVU0492 0.42 -4.2
561,709 - argC DVU0492 0.42 -1.6
561,719 + argC DVU0492 0.43 -3.0
561,727 - argC DVU0492 0.44 -3.3
561,737 - argC DVU0492 0.45 -3.5
561,830 - argC DVU0492 0.53 -3.8
561,832 - argC DVU0492 0.53 -5.3
561,841 + argC DVU0492 0.54 -1.6
561,858 - argC DVU0492 0.56 -4.8
561,885 + argC DVU0492 0.58 -3.6
561,944 - argC DVU0492 0.64 -2.8
561,959 + argC DVU0492 0.65 -2.2
562,163 + argC DVU0492 0.85 -4.1
562,182 + argC DVU0492 0.86 -0.6
562,190 - argC DVU0492 0.87 -6.3
562,324 + -2.8
562,379 - DVU0493 0.14 -1.9
562,425 + DVU0493 0.28 -0.9
562,475 - DVU0493 0.45 -0.7
562,625 + -0.9
562,641 + -0.5
562,655 + -0.6
562,700 + -3.0
562,708 - -1.6

Or see this region's nucleotide sequence