Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0082

Experiment: Pyruvate-Sulfate (60-15mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0081 and DVU0082 are separated by 93 nucleotidesDVU0082 and DVU0083 are separated by 129 nucleotidesDVU0083 and DVU0084 are separated by 71 nucleotides DVU0081: DVU0081 - sensory box histidine kinase/response regulator (TIGR), at 98,559 to 100,289 DVU0081 DVU0082: DVU0082 - conserved hypothetical protein (TIGR), at 100,383 to 101,975 DVU0082 DVU0083: DVU0083 - conserved hypothetical protein (TIGR), at 102,105 to 102,524 DVU0083 DVU0084: DVU0084 - translation initiation factor, aIF-2BI family, putative (TIGR), at 102,596 to 103,648 DVU0084 Position (kb) 100 101 102Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 99.408 kb on + strand, within DVU0081at 99.473 kb on + strand, within DVU0081at 99.498 kb on + strand, within DVU0081at 99.506 kb on - strand, within DVU0081at 99.506 kb on - strand, within DVU0081at 99.575 kb on + strand, within DVU0081at 99.580 kb on + strand, within DVU0081at 99.583 kb on - strand, within DVU0081at 99.583 kb on - strand, within DVU0081at 99.588 kb on - strand, within DVU0081at 99.615 kb on + strand, within DVU0081at 99.668 kb on + strand, within DVU0081at 99.669 kb on + strand, within DVU0081at 99.669 kb on + strand, within DVU0081at 99.698 kb on - strand, within DVU0081at 99.712 kb on + strand, within DVU0081at 99.735 kb on - strand, within DVU0081at 99.794 kb on + strand, within DVU0081at 99.802 kb on - strand, within DVU0081at 99.853 kb on - strand, within DVU0081at 99.908 kb on - strand, within DVU0081at 99.933 kb on - strand, within DVU0081at 100.002 kb on + strand, within DVU0081at 100.010 kb on - strand, within DVU0081at 100.010 kb on - strand, within DVU0081at 100.032 kb on - strand, within DVU0081at 100.075 kb on + strand, within DVU0081at 100.169 kb on - strandat 100.198 kb on + strandat 100.219 kb on + strandat 100.237 kb on - strandat 100.242 kb on - strandat 100.267 kb on - strandat 100.279 kb on + strandat 100.353 kb on - strandat 100.397 kb on + strandat 100.405 kb on - strandat 100.525 kb on + strandat 100.525 kb on + strandat 100.525 kb on + strandat 100.533 kb on - strandat 100.533 kb on - strandat 100.533 kb on - strandat 100.545 kb on - strand, within DVU0082at 100.545 kb on - strand, within DVU0082at 100.545 kb on - strand, within DVU0082at 100.624 kb on - strand, within DVU0082at 100.636 kb on + strand, within DVU0082at 100.726 kb on - strand, within DVU0082at 100.737 kb on - strand, within DVU0082at 100.785 kb on + strand, within DVU0082at 100.785 kb on + strand, within DVU0082at 100.790 kb on + strand, within DVU0082at 100.793 kb on - strand, within DVU0082at 100.846 kb on + strand, within DVU0082at 100.854 kb on - strand, within DVU0082at 100.909 kb on + strand, within DVU0082at 100.909 kb on + strand, within DVU0082at 100.909 kb on + strand, within DVU0082at 100.917 kb on - strand, within DVU0082at 100.924 kb on + strand, within DVU0082at 100.989 kb on - strand, within DVU0082at 101.006 kb on + strand, within DVU0082at 101.006 kb on + strand, within DVU0082at 101.009 kb on - strand, within DVU0082at 101.058 kb on + strand, within DVU0082at 101.066 kb on - strand, within DVU0082at 101.066 kb on - strand, within DVU0082at 101.174 kb on + strand, within DVU0082at 101.197 kb on - strand, within DVU0082at 101.201 kb on + strand, within DVU0082at 101.210 kb on + strand, within DVU0082at 101.220 kb on + strand, within DVU0082at 101.220 kb on + strand, within DVU0082at 101.234 kb on + strand, within DVU0082at 101.242 kb on - strand, within DVU0082at 101.325 kb on + strand, within DVU0082at 101.328 kb on - strand, within DVU0082at 101.338 kb on + strand, within DVU0082at 101.346 kb on - strand, within DVU0082at 101.346 kb on - strand, within DVU0082at 101.358 kb on + strand, within DVU0082at 101.386 kb on - strand, within DVU0082at 101.399 kb on + strand, within DVU0082at 101.407 kb on - strand, within DVU0082at 101.416 kb on - strand, within DVU0082at 101.427 kb on + strand, within DVU0082at 101.484 kb on - strand, within DVU0082at 101.488 kb on - strand, within DVU0082at 101.514 kb on + strand, within DVU0082at 101.590 kb on - strand, within DVU0082at 101.671 kb on + strand, within DVU0082at 101.682 kb on - strand, within DVU0082at 101.730 kb on - strand, within DVU0082at 101.731 kb on + strand, within DVU0082at 101.731 kb on + strand, within DVU0082at 101.731 kb on + strand, within DVU0082at 101.733 kb on + strand, within DVU0082at 101.739 kb on - strand, within DVU0082at 101.739 kb on - strand, within DVU0082at 101.751 kb on - strand, within DVU0082at 101.782 kb on + strand, within DVU0082at 101.841 kb on - strandat 101.853 kb on + strandat 101.861 kb on - strandat 101.875 kb on + strandat 101.900 kb on + strandat 101.908 kb on - strandat 101.952 kb on + strandat 101.957 kb on + strandat 101.979 kb on - strandat 102.027 kb on + strandat 102.044 kb on + strandat 102.140 kb on - strandat 102.140 kb on - strandat 102.157 kb on + strand, within DVU0083at 102.162 kb on + strand, within DVU0083at 102.165 kb on - strand, within DVU0083at 102.189 kb on + strand, within DVU0083at 102.202 kb on - strand, within DVU0083at 102.237 kb on + strand, within DVU0083at 102.247 kb on - strand, within DVU0083at 102.334 kb on - strand, within DVU0083at 102.355 kb on + strand, within DVU0083at 102.355 kb on + strand, within DVU0083at 102.355 kb on + strand, within DVU0083at 102.393 kb on - strand, within DVU0083at 102.433 kb on + strand, within DVU0083at 102.486 kb on + strandat 102.569 kb on - strandat 102.700 kb on + strandat 102.735 kb on + strand, within DVU0084at 102.758 kb on - strand, within DVU0084at 102.806 kb on + strand, within DVU0084at 102.948 kb on + strand, within DVU0084at 102.959 kb on - strand, within DVU0084at 102.961 kb on - strand, within DVU0084

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Molybdate 100uM
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99,408 + DVU0081 0.49 -0.2
99,473 + DVU0081 0.53 -0.7
99,498 + DVU0081 0.54 +0.2
99,506 - DVU0081 0.55 +0.1
99,506 - DVU0081 0.55 -0.3
99,575 + DVU0081 0.59 -1.2
99,580 + DVU0081 0.59 -0.0
99,583 - DVU0081 0.59 -0.0
99,583 - DVU0081 0.59 +0.4
99,588 - DVU0081 0.59 -0.8
99,615 + DVU0081 0.61 +0.4
99,668 + DVU0081 0.64 -1.2
99,669 + DVU0081 0.64 -0.3
99,669 + DVU0081 0.64 +1.1
99,698 - DVU0081 0.66 +0.5
99,712 + DVU0081 0.67 +0.2
99,735 - DVU0081 0.68 +0.3
99,794 + DVU0081 0.71 -0.6
99,802 - DVU0081 0.72 +0.0
99,853 - DVU0081 0.75 -3.9
99,908 - DVU0081 0.78 -0.4
99,933 - DVU0081 0.79 +0.0
100,002 + DVU0081 0.83 +0.6
100,010 - DVU0081 0.84 -0.2
100,010 - DVU0081 0.84 -0.0
100,032 - DVU0081 0.85 -0.1
100,075 + DVU0081 0.88 -0.6
100,169 - -0.3
100,198 + +0.3
100,219 + +0.6
100,237 - -0.2
100,242 - -0.6
100,267 - -0.4
100,279 + +1.0
100,353 - +0.4
100,397 + -1.6
100,405 - -0.2
100,525 + +0.1
100,525 + -0.2
100,525 + -0.5
100,533 - -0.4
100,533 - -0.4
100,533 - +0.1
100,545 - DVU0082 0.10 -0.1
100,545 - DVU0082 0.10 -1.3
100,545 - DVU0082 0.10 -0.0
100,624 - DVU0082 0.15 -0.1
100,636 + DVU0082 0.16 +0.5
100,726 - DVU0082 0.22 -0.4
100,737 - DVU0082 0.22 -0.5
100,785 + DVU0082 0.25 -0.1
100,785 + DVU0082 0.25 -0.1
100,790 + DVU0082 0.26 -0.0
100,793 - DVU0082 0.26 -0.2
100,846 + DVU0082 0.29 +0.5
100,854 - DVU0082 0.30 -0.8
100,909 + DVU0082 0.33 -2.1
100,909 + DVU0082 0.33 -0.4
100,909 + DVU0082 0.33 -0.4
100,917 - DVU0082 0.34 +0.0
100,924 + DVU0082 0.34 -1.6
100,989 - DVU0082 0.38 -0.0
101,006 + DVU0082 0.39 +0.5
101,006 + DVU0082 0.39 -1.4
101,009 - DVU0082 0.39 +0.1
101,058 + DVU0082 0.42 -1.6
101,066 - DVU0082 0.43 +0.3
101,066 - DVU0082 0.43 -0.5
101,174 + DVU0082 0.50 -1.2
101,197 - DVU0082 0.51 -0.2
101,201 + DVU0082 0.51 -0.5
101,210 + DVU0082 0.52 -0.3
101,220 + DVU0082 0.53 -0.6
101,220 + DVU0082 0.53 -0.1
101,234 + DVU0082 0.53 -0.9
101,242 - DVU0082 0.54 -2.0
101,325 + DVU0082 0.59 -1.3
101,328 - DVU0082 0.59 -0.8
101,338 + DVU0082 0.60 -0.4
101,346 - DVU0082 0.60 +2.0
101,346 - DVU0082 0.60 +0.0
101,358 + DVU0082 0.61 -0.0
101,386 - DVU0082 0.63 -0.4
101,399 + DVU0082 0.64 -1.6
101,407 - DVU0082 0.64 +1.1
101,416 - DVU0082 0.65 -0.4
101,427 + DVU0082 0.66 +0.1
101,484 - DVU0082 0.69 -0.9
101,488 - DVU0082 0.69 +0.0
101,514 + DVU0082 0.71 +0.1
101,590 - DVU0082 0.76 -0.1
101,671 + DVU0082 0.81 -0.1
101,682 - DVU0082 0.82 -0.1
101,730 - DVU0082 0.85 +1.4
101,731 + DVU0082 0.85 -0.4
101,731 + DVU0082 0.85 -0.5
101,731 + DVU0082 0.85 +1.4
101,733 + DVU0082 0.85 -1.1
101,739 - DVU0082 0.85 -0.7
101,739 - DVU0082 0.85 -0.9
101,751 - DVU0082 0.86 -0.6
101,782 + DVU0082 0.88 +0.0
101,841 - +0.2
101,853 + -0.7
101,861 - +0.1
101,875 + -0.2
101,900 + +0.9
101,908 - +0.0
101,952 + -0.2
101,957 + -0.5
101,979 - +0.3
102,027 + -1.8
102,044 + -0.2
102,140 - -1.9
102,140 - -0.2
102,157 + DVU0083 0.12 +0.4
102,162 + DVU0083 0.14 +0.2
102,165 - DVU0083 0.14 -0.0
102,189 + DVU0083 0.20 +1.2
102,202 - DVU0083 0.23 -0.6
102,237 + DVU0083 0.31 -0.1
102,247 - DVU0083 0.34 -2.9
102,334 - DVU0083 0.55 +0.6
102,355 + DVU0083 0.60 -0.5
102,355 + DVU0083 0.60 -4.1
102,355 + DVU0083 0.60 +0.3
102,393 - DVU0083 0.69 +0.0
102,433 + DVU0083 0.78 -0.4
102,486 + -0.4
102,569 - -3.5
102,700 + +1.0
102,735 + DVU0084 0.13 +0.3
102,758 - DVU0084 0.15 +0.4
102,806 + DVU0084 0.20 +1.6
102,948 + DVU0084 0.33 +0.5
102,959 - DVU0084 0.34 +0.5
102,961 - DVU0084 0.35 +0.3

Or see this region's nucleotide sequence