Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2805

Experiment: Pyruvate-Sulfate (60-15mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2804 and DVU2805 are separated by 46 nucleotidesDVU2805 and DVU2806 overlap by 14 nucleotidesDVU2806 and DVU2807 are separated by 19 nucleotides DVU2804: DVU2804 - metallo-beta-lactamase family protein (TIGR), at 2,907,340 to 2,908,497 DVU2804 DVU2805: DVU2805 - cobalamin synthesis protein/P47K family (TIGR), at 2,908,544 to 2,910,490 DVU2805 DVU2806: DVU2806 - MotA/TolQ/ExbB proton channel family protein (TIGR), at 2,910,477 to 2,911,226 DVU2806 DVU2807: DVU2807 - biopolymer transport protein, ExbD/TolR family (TIGR), at 2,911,246 to 2,911,656 DVU2807 Position (kb) 2908 2909 2910 2911Strain fitness (log2 ratio) -2 -1 0 1 2at 2907.633 kb on + strand, within DVU2804at 2907.633 kb on + strand, within DVU2804at 2907.633 kb on + strand, within DVU2804at 2907.639 kb on + strand, within DVU2804at 2907.639 kb on + strand, within DVU2804at 2907.639 kb on + strand, within DVU2804at 2907.647 kb on - strand, within DVU2804at 2907.647 kb on - strand, within DVU2804at 2907.648 kb on - strand, within DVU2804at 2907.730 kb on + strand, within DVU2804at 2907.916 kb on - strand, within DVU2804at 2907.930 kb on + strand, within DVU2804at 2907.930 kb on + strand, within DVU2804at 2907.981 kb on - strand, within DVU2804at 2908.279 kb on + strand, within DVU2804at 2908.359 kb on + strand, within DVU2804at 2908.379 kb on - strand, within DVU2804at 2908.413 kb on + strandat 2908.418 kb on + strandat 2908.426 kb on - strandat 2908.433 kb on + strandat 2908.443 kb on + strandat 2908.446 kb on - strandat 2908.451 kb on - strandat 2908.595 kb on - strandat 2908.678 kb on + strandat 2908.768 kb on - strand, within DVU2805at 2908.781 kb on - strand, within DVU2805at 2908.812 kb on - strand, within DVU2805at 2908.831 kb on + strand, within DVU2805at 2908.910 kb on + strand, within DVU2805at 2909.083 kb on + strand, within DVU2805at 2909.088 kb on + strand, within DVU2805at 2909.152 kb on - strand, within DVU2805at 2909.186 kb on - strand, within DVU2805at 2909.191 kb on - strand, within DVU2805at 2909.201 kb on - strand, within DVU2805at 2909.222 kb on + strand, within DVU2805at 2909.232 kb on - strand, within DVU2805at 2909.256 kb on - strand, within DVU2805at 2909.280 kb on - strand, within DVU2805at 2909.280 kb on - strand, within DVU2805at 2909.331 kb on + strand, within DVU2805at 2909.331 kb on + strand, within DVU2805at 2909.339 kb on - strand, within DVU2805at 2909.339 kb on - strand, within DVU2805at 2909.361 kb on + strand, within DVU2805at 2909.388 kb on - strand, within DVU2805at 2909.393 kb on + strand, within DVU2805at 2909.401 kb on - strand, within DVU2805at 2909.420 kb on - strand, within DVU2805at 2909.438 kb on - strand, within DVU2805at 2909.594 kb on - strand, within DVU2805at 2909.642 kb on - strand, within DVU2805at 2909.681 kb on - strand, within DVU2805at 2909.718 kb on + strand, within DVU2805at 2909.736 kb on - strand, within DVU2805at 2909.753 kb on + strand, within DVU2805at 2909.761 kb on - strand, within DVU2805at 2909.817 kb on + strand, within DVU2805at 2909.819 kb on + strand, within DVU2805at 2909.841 kb on + strand, within DVU2805at 2909.849 kb on - strand, within DVU2805at 2909.984 kb on - strand, within DVU2805at 2910.030 kb on - strand, within DVU2805at 2910.057 kb on + strand, within DVU2805at 2910.076 kb on + strand, within DVU2805at 2910.106 kb on - strand, within DVU2805at 2910.132 kb on - strand, within DVU2805at 2910.327 kb on + strandat 2910.365 kb on - strandat 2910.484 kb on + strandat 2910.506 kb on + strandat 2910.514 kb on - strandat 2910.514 kb on - strandat 2910.531 kb on + strandat 2910.622 kb on - strand, within DVU2806at 2910.622 kb on - strand, within DVU2806at 2910.622 kb on - strand, within DVU2806at 2910.622 kb on - strand, within DVU2806at 2910.622 kb on - strand, within DVU2806at 2910.645 kb on + strand, within DVU2806at 2910.704 kb on + strand, within DVU2806at 2910.770 kb on - strand, within DVU2806at 2910.784 kb on + strand, within DVU2806at 2910.799 kb on + strand, within DVU2806at 2910.802 kb on - strand, within DVU2806at 2910.855 kb on + strand, within DVU2806at 2910.981 kb on + strand, within DVU2806at 2911.046 kb on + strand, within DVU2806at 2911.115 kb on - strand, within DVU2806at 2911.208 kb on - strandat 2911.281 kb on - strandat 2911.290 kb on - strand, within DVU2807at 2911.322 kb on + strand, within DVU2807at 2911.374 kb on + strand, within DVU2807at 2911.397 kb on - strand, within DVU2807at 2911.474 kb on - strand, within DVU2807at 2911.484 kb on - strand, within DVU2807

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Molybdate 100uM
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2,907,633 + DVU2804 0.25 +0.1
2,907,633 + DVU2804 0.25 -0.7
2,907,633 + DVU2804 0.25 -0.1
2,907,639 + DVU2804 0.26 -0.4
2,907,639 + DVU2804 0.26 -2.3
2,907,639 + DVU2804 0.26 -0.1
2,907,647 - DVU2804 0.27 -0.1
2,907,647 - DVU2804 0.27 -0.4
2,907,648 - DVU2804 0.27 -1.0
2,907,730 + DVU2804 0.34 +1.1
2,907,916 - DVU2804 0.50 -0.5
2,907,930 + DVU2804 0.51 -2.2
2,907,930 + DVU2804 0.51 -0.4
2,907,981 - DVU2804 0.55 -0.4
2,908,279 + DVU2804 0.81 -0.2
2,908,359 + DVU2804 0.88 -0.0
2,908,379 - DVU2804 0.90 -0.1
2,908,413 + -0.1
2,908,418 + +0.6
2,908,426 - -0.7
2,908,433 + -0.4
2,908,443 + -0.1
2,908,446 - -1.5
2,908,451 - -0.1
2,908,595 - -0.3
2,908,678 + -0.5
2,908,768 - DVU2805 0.12 -1.2
2,908,781 - DVU2805 0.12 -1.0
2,908,812 - DVU2805 0.14 -0.2
2,908,831 + DVU2805 0.15 -0.6
2,908,910 + DVU2805 0.19 -0.1
2,909,083 + DVU2805 0.28 +0.3
2,909,088 + DVU2805 0.28 -0.7
2,909,152 - DVU2805 0.31 +0.2
2,909,186 - DVU2805 0.33 +1.2
2,909,191 - DVU2805 0.33 -0.3
2,909,201 - DVU2805 0.34 -0.3
2,909,222 + DVU2805 0.35 -0.3
2,909,232 - DVU2805 0.35 -0.3
2,909,256 - DVU2805 0.37 -0.1
2,909,280 - DVU2805 0.38 -0.0
2,909,280 - DVU2805 0.38 -0.3
2,909,331 + DVU2805 0.40 -0.2
2,909,331 + DVU2805 0.40 -0.2
2,909,339 - DVU2805 0.41 -0.1
2,909,339 - DVU2805 0.41 -0.2
2,909,361 + DVU2805 0.42 -0.1
2,909,388 - DVU2805 0.43 -1.0
2,909,393 + DVU2805 0.44 +0.0
2,909,401 - DVU2805 0.44 +0.0
2,909,420 - DVU2805 0.45 -0.4
2,909,438 - DVU2805 0.46 -0.0
2,909,594 - DVU2805 0.54 -0.7
2,909,642 - DVU2805 0.56 +0.7
2,909,681 - DVU2805 0.58 -0.8
2,909,718 + DVU2805 0.60 -0.5
2,909,736 - DVU2805 0.61 -0.5
2,909,753 + DVU2805 0.62 +1.8
2,909,761 - DVU2805 0.63 -0.4
2,909,817 + DVU2805 0.65 -0.1
2,909,819 + DVU2805 0.65 +0.5
2,909,841 + DVU2805 0.67 -0.5
2,909,849 - DVU2805 0.67 -0.0
2,909,984 - DVU2805 0.74 -0.7
2,910,030 - DVU2805 0.76 -0.6
2,910,057 + DVU2805 0.78 -0.7
2,910,076 + DVU2805 0.79 -0.3
2,910,106 - DVU2805 0.80 -2.6
2,910,132 - DVU2805 0.82 -0.4
2,910,327 + -0.4
2,910,365 - +0.3
2,910,484 + -0.5
2,910,506 + -1.3
2,910,514 - +0.2
2,910,514 - -0.1
2,910,531 + -0.7
2,910,622 - DVU2806 0.19 -0.0
2,910,622 - DVU2806 0.19 -0.1
2,910,622 - DVU2806 0.19 -1.4
2,910,622 - DVU2806 0.19 +0.1
2,910,622 - DVU2806 0.19 -0.0
2,910,645 + DVU2806 0.22 -0.1
2,910,704 + DVU2806 0.30 -0.4
2,910,770 - DVU2806 0.39 +0.1
2,910,784 + DVU2806 0.41 +0.1
2,910,799 + DVU2806 0.43 -0.1
2,910,802 - DVU2806 0.43 +0.3
2,910,855 + DVU2806 0.50 +0.1
2,910,981 + DVU2806 0.67 -0.9
2,911,046 + DVU2806 0.76 -0.2
2,911,115 - DVU2806 0.85 -0.1
2,911,208 - +0.2
2,911,281 - +0.5
2,911,290 - DVU2807 0.11 +0.0
2,911,322 + DVU2807 0.18 -0.7
2,911,374 + DVU2807 0.31 +0.4
2,911,397 - DVU2807 0.37 -0.5
2,911,474 - DVU2807 0.55 -0.7
2,911,484 - DVU2807 0.58 -0.2

Or see this region's nucleotide sequence