Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2392

Experiment: Pyruvate-Sulfate (60-15mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2390 and tRNA-Asn are separated by 281 nucleotidestRNA-Asn and DVU2391 are separated by 151 nucleotidesDVU2391 and DVU2392 are separated by 184 nucleotidesDVU2392 and DORF41366 are separated by 112 nucleotides DVU2390: DVU2390 - TonB domain protein (TIGR), at 2,492,313 to 2,493,221 DVU2390 DVU_tRNA-Asn-2: tRNA-Asn - tRNA with anticodon GTT for Asn (VIMSS-AUTO), at 2,493,503 to 2,493,578 tRNA-Asn DVU2391: DVU2391 - hypothetical protein (TIGR), at 2,493,730 to 2,493,873 DVU2391 DVU2392: DVU2392 - type III secretion chaperone, CesT family (TIGR), at 2,494,058 to 2,494,510 DVU2392 DORF41366: DORF41366 - SEED: FIG00607184: hypothetical protein, at 2,494,623 to 2,496,719 DORF41366 Position (kb) 2494 2495Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2493.074 kb on - strand, within DVU2390at 2493.363 kb on + strandat 2493.363 kb on + strandat 2493.376 kb on + strandat 2493.376 kb on + strandat 2493.384 kb on - strandat 2493.675 kb on + strandat 2493.832 kb on - strand, within DVU2391at 2493.963 kb on + strandat 2493.983 kb on - strandat 2494.051 kb on - strandat 2494.170 kb on + strand, within DVU2392at 2494.179 kb on - strand, within DVU2392at 2494.199 kb on + strand, within DVU2392at 2494.201 kb on - strand, within DVU2392at 2494.214 kb on - strand, within DVU2392at 2494.289 kb on - strand, within DVU2392at 2494.392 kb on - strand, within DVU2392at 2494.444 kb on + strand, within DVU2392at 2494.444 kb on + strand, within DVU2392at 2494.452 kb on - strand, within DVU2392at 2494.486 kb on - strandat 2494.554 kb on - strandat 2494.554 kb on - strandat 2494.642 kb on + strandat 2494.643 kb on + strandat 2494.650 kb on - strandat 2494.787 kb on + strandat 2494.792 kb on + strandat 2494.811 kb on + strandat 2494.860 kb on - strand, within DORF41366at 2494.870 kb on + strand, within DORF41366at 2494.871 kb on - strand, within DORF41366at 2494.883 kb on + strand, within DORF41366at 2494.949 kb on - strand, within DORF41366at 2494.957 kb on + strand, within DORF41366at 2495.076 kb on + strand, within DORF41366at 2495.089 kb on - strand, within DORF41366at 2495.188 kb on - strand, within DORF41366at 2495.212 kb on + strand, within DORF41366at 2495.304 kb on - strand, within DORF41366at 2495.309 kb on - strand, within DORF41366at 2495.314 kb on - strand, within DORF41366at 2495.314 kb on - strand, within DORF41366at 2495.319 kb on - strand, within DORF41366at 2495.329 kb on - strand, within DORF41366at 2495.329 kb on - strand, within DORF41366at 2495.383 kb on - strand, within DORF41366at 2495.395 kb on - strand, within DORF41366at 2495.475 kb on - strand, within DORF41366

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Molybdate 100uM
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2,493,074 - DVU2390 0.84 -2.4
2,493,363 + -0.1
2,493,363 + -3.1
2,493,376 + -0.4
2,493,376 + +0.0
2,493,384 - +1.5
2,493,675 + -0.1
2,493,832 - DVU2391 0.71 +0.5
2,493,963 + -0.6
2,493,983 - +0.0
2,494,051 - +1.3
2,494,170 + DVU2392 0.25 -1.8
2,494,179 - DVU2392 0.27 -0.8
2,494,199 + DVU2392 0.31 -0.4
2,494,201 - DVU2392 0.32 -1.4
2,494,214 - DVU2392 0.34 -0.0
2,494,289 - DVU2392 0.51 -0.1
2,494,392 - DVU2392 0.74 -4.1
2,494,444 + DVU2392 0.85 -3.3
2,494,444 + DVU2392 0.85 +0.1
2,494,452 - DVU2392 0.87 +0.8
2,494,486 - -0.1
2,494,554 - +0.1
2,494,554 - +0.9
2,494,642 + -2.2
2,494,643 + -1.3
2,494,650 - +0.2
2,494,787 + -0.3
2,494,792 + -2.4
2,494,811 + +1.3
2,494,860 - DORF41366 0.11 +0.2
2,494,870 + DORF41366 0.12 -0.7
2,494,871 - DORF41366 0.12 -0.6
2,494,883 + DORF41366 0.12 -2.3
2,494,949 - DORF41366 0.16 -0.2
2,494,957 + DORF41366 0.16 +0.3
2,495,076 + DORF41366 0.22 -0.1
2,495,089 - DORF41366 0.22 +0.2
2,495,188 - DORF41366 0.27 -0.1
2,495,212 + DORF41366 0.28 +0.7
2,495,304 - DORF41366 0.32 +0.2
2,495,309 - DORF41366 0.33 +0.8
2,495,314 - DORF41366 0.33 -0.5
2,495,314 - DORF41366 0.33 +0.1
2,495,319 - DORF41366 0.33 +0.3
2,495,329 - DORF41366 0.34 -0.3
2,495,329 - DORF41366 0.34 +0.2
2,495,383 - DORF41366 0.36 -0.5
2,495,395 - DORF41366 0.37 -0.2
2,495,475 - DORF41366 0.41 +0.4

Or see this region's nucleotide sequence