Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1169

Experiment: Pyruvate-Sulfate (60-15mM) with Molybdate 100uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU1168 and DVU1169 are separated by 97 nucleotidesDVU1169 and DVU1170 are separated by 311 nucleotides DVU1168: DVU1168 - hypothetical protein (TIGR), at 1,260,521 to 1,260,937 DVU1168 DVU1169: DVU1169 - methyl-accepting chemotaxis protein (TIGR), at 1,261,035 to 1,263,449 DVU1169 DVU1170: DVU1170 - hypothetical protein (TIGR), at 1,263,761 to 1,263,949 DVU1170 Position (kb) 1261 1262 1263 1264Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1260.358 kb on + strandat 1260.411 kb on - strandat 1260.411 kb on - strandat 1260.421 kb on - strandat 1260.553 kb on + strandat 1260.613 kb on - strand, within DVU1168at 1260.626 kb on + strand, within DVU1168at 1260.660 kb on + strand, within DVU1168at 1260.662 kb on + strand, within DVU1168at 1260.663 kb on - strand, within DVU1168at 1260.670 kb on - strand, within DVU1168at 1260.834 kb on + strand, within DVU1168at 1260.852 kb on - strand, within DVU1168at 1260.852 kb on - strand, within DVU1168at 1260.873 kb on + strand, within DVU1168at 1260.884 kb on - strand, within DVU1168at 1260.917 kb on - strandat 1260.996 kb on - strandat 1261.098 kb on - strandat 1261.191 kb on + strandat 1261.284 kb on - strand, within DVU1169at 1261.326 kb on + strand, within DVU1169at 1261.348 kb on + strand, within DVU1169at 1261.353 kb on + strand, within DVU1169at 1261.552 kb on + strand, within DVU1169at 1261.560 kb on - strand, within DVU1169at 1261.602 kb on - strand, within DVU1169at 1261.694 kb on - strand, within DVU1169at 1261.773 kb on - strand, within DVU1169at 1261.797 kb on - strand, within DVU1169at 1261.817 kb on + strand, within DVU1169at 1261.827 kb on + strand, within DVU1169at 1262.039 kb on - strand, within DVU1169at 1262.083 kb on + strand, within DVU1169at 1262.091 kb on - strand, within DVU1169at 1262.091 kb on - strand, within DVU1169at 1262.133 kb on + strand, within DVU1169at 1262.133 kb on + strand, within DVU1169at 1262.172 kb on - strand, within DVU1169at 1262.205 kb on + strand, within DVU1169at 1262.208 kb on + strand, within DVU1169at 1262.256 kb on - strand, within DVU1169at 1262.406 kb on + strand, within DVU1169at 1262.408 kb on + strand, within DVU1169at 1262.517 kb on + strand, within DVU1169at 1262.552 kb on + strand, within DVU1169at 1262.560 kb on - strand, within DVU1169at 1262.562 kb on - strand, within DVU1169at 1262.603 kb on - strand, within DVU1169at 1262.686 kb on + strand, within DVU1169at 1262.705 kb on - strand, within DVU1169at 1262.741 kb on - strand, within DVU1169at 1262.798 kb on - strand, within DVU1169at 1262.848 kb on - strand, within DVU1169at 1262.987 kb on - strand, within DVU1169at 1262.995 kb on + strand, within DVU1169at 1263.005 kb on + strand, within DVU1169at 1263.205 kb on - strand, within DVU1169at 1263.268 kb on - strandat 1263.270 kb on + strandat 1263.278 kb on - strandat 1263.574 kb on - strandat 1263.736 kb on + strandat 1263.744 kb on - strandat 1263.774 kb on - strandat 1263.774 kb on - strandat 1263.802 kb on + strand, within DVU1170at 1263.919 kb on + strand, within DVU1170at 1264.027 kb on - strandat 1264.037 kb on - strandat 1264.121 kb on - strandat 1264.237 kb on + strandat 1264.255 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Molybdate 100uM
remove
1,260,358 + -0.1
1,260,411 - -0.1
1,260,411 - +0.4
1,260,421 - -0.4
1,260,553 + -4.1
1,260,613 - DVU1168 0.22 +0.2
1,260,626 + DVU1168 0.25 +0.6
1,260,660 + DVU1168 0.33 -0.2
1,260,662 + DVU1168 0.34 -0.3
1,260,663 - DVU1168 0.34 -0.5
1,260,670 - DVU1168 0.36 -0.0
1,260,834 + DVU1168 0.75 +0.0
1,260,852 - DVU1168 0.79 +0.9
1,260,852 - DVU1168 0.79 +0.0
1,260,873 + DVU1168 0.84 +0.1
1,260,884 - DVU1168 0.87 +0.1
1,260,917 - -0.0
1,260,996 - -0.2
1,261,098 - -0.3
1,261,191 + -2.0
1,261,284 - DVU1169 0.10 +0.8
1,261,326 + DVU1169 0.12 -0.6
1,261,348 + DVU1169 0.13 -0.7
1,261,353 + DVU1169 0.13 +0.4
1,261,552 + DVU1169 0.21 +0.5
1,261,560 - DVU1169 0.22 -0.3
1,261,602 - DVU1169 0.23 -0.7
1,261,694 - DVU1169 0.27 -0.4
1,261,773 - DVU1169 0.31 -0.2
1,261,797 - DVU1169 0.32 -0.5
1,261,817 + DVU1169 0.32 -0.0
1,261,827 + DVU1169 0.33 +0.0
1,262,039 - DVU1169 0.42 -0.4
1,262,083 + DVU1169 0.43 +0.1
1,262,091 - DVU1169 0.44 -0.9
1,262,091 - DVU1169 0.44 -1.0
1,262,133 + DVU1169 0.45 -0.4
1,262,133 + DVU1169 0.45 -0.7
1,262,172 - DVU1169 0.47 -2.1
1,262,205 + DVU1169 0.48 -1.4
1,262,208 + DVU1169 0.49 -0.4
1,262,256 - DVU1169 0.51 +1.0
1,262,406 + DVU1169 0.57 -0.4
1,262,408 + DVU1169 0.57 +0.2
1,262,517 + DVU1169 0.61 -0.8
1,262,552 + DVU1169 0.63 +0.5
1,262,560 - DVU1169 0.63 -1.1
1,262,562 - DVU1169 0.63 -0.5
1,262,603 - DVU1169 0.65 -0.6
1,262,686 + DVU1169 0.68 +0.3
1,262,705 - DVU1169 0.69 -1.0
1,262,741 - DVU1169 0.71 -0.7
1,262,798 - DVU1169 0.73 -0.5
1,262,848 - DVU1169 0.75 -0.8
1,262,987 - DVU1169 0.81 -1.3
1,262,995 + DVU1169 0.81 -1.3
1,263,005 + DVU1169 0.82 -0.5
1,263,205 - DVU1169 0.90 -0.9
1,263,268 - -0.3
1,263,270 + -0.8
1,263,278 - +0.4
1,263,574 - -0.1
1,263,736 + -0.4
1,263,744 - -1.3
1,263,774 - +1.0
1,263,774 - -0.7
1,263,802 + DVU1170 0.22 -1.5
1,263,919 + DVU1170 0.84 -0.4
1,264,027 - -2.2
1,264,037 - +0.5
1,264,121 - +0.2
1,264,237 + -0.5
1,264,255 - -0.2

Or see this region's nucleotide sequence