Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0296

Experiment: BHIS with Dimetridazole 0.00625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0295 and BT0296 are separated by 15 nucleotidesBT0296 and BT0297 are separated by 20 nucleotides BT0295: BT0295 - ABC transporter ATP-binding protein (NCBI ptt file), at 344,839 to 345,732 BT0295 BT0296: BT0296 - putative xanthan lyase XalB precursor (NCBI ptt file), at 345,748 to 349,053 BT0296 BT0297: BT0297 - putative outer membrane lipoprotein silC precursor (NCBI ptt file), at 349,074 to 350,570 BT0297 Position (kb) 345 346 347 348 349 350Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 344.749 kb on - strandat 344.799 kb on - strandat 344.863 kb on - strandat 344.863 kb on - strandat 344.940 kb on - strand, within BT0295at 344.970 kb on - strand, within BT0295at 345.229 kb on + strand, within BT0295at 345.230 kb on - strand, within BT0295at 345.230 kb on - strand, within BT0295at 345.230 kb on - strand, within BT0295at 345.288 kb on - strand, within BT0295at 345.288 kb on - strand, within BT0295at 345.400 kb on - strand, within BT0295at 345.409 kb on - strand, within BT0295at 345.445 kb on - strand, within BT0295at 345.618 kb on - strand, within BT0295at 345.646 kb on + strandat 345.695 kb on - strandat 345.757 kb on - strandat 345.758 kb on + strandat 345.758 kb on + strandat 345.758 kb on + strandat 345.762 kb on + strandat 345.910 kb on - strandat 345.935 kb on - strandat 345.973 kb on - strandat 345.979 kb on - strandat 346.067 kb on - strandat 346.092 kb on + strand, within BT0296at 346.122 kb on + strand, within BT0296at 346.125 kb on + strand, within BT0296at 346.212 kb on + strand, within BT0296at 346.297 kb on + strand, within BT0296at 346.299 kb on + strand, within BT0296at 346.309 kb on - strand, within BT0296at 346.318 kb on + strand, within BT0296at 346.352 kb on - strand, within BT0296at 346.353 kb on + strand, within BT0296at 346.354 kb on - strand, within BT0296at 346.362 kb on + strand, within BT0296at 346.363 kb on - strand, within BT0296at 346.510 kb on - strand, within BT0296at 346.510 kb on - strand, within BT0296at 346.576 kb on - strand, within BT0296at 346.578 kb on - strand, within BT0296at 346.578 kb on - strand, within BT0296at 346.637 kb on - strand, within BT0296at 346.670 kb on - strand, within BT0296at 346.839 kb on - strand, within BT0296at 346.914 kb on - strand, within BT0296at 346.918 kb on - strand, within BT0296at 347.045 kb on - strand, within BT0296at 347.072 kb on - strand, within BT0296at 347.072 kb on - strand, within BT0296at 347.072 kb on - strand, within BT0296at 347.072 kb on - strand, within BT0296at 347.148 kb on - strand, within BT0296at 347.195 kb on - strand, within BT0296at 347.284 kb on + strand, within BT0296at 347.315 kb on - strand, within BT0296at 347.367 kb on + strand, within BT0296at 347.396 kb on - strand, within BT0296at 347.397 kb on + strand, within BT0296at 347.493 kb on - strand, within BT0296at 347.508 kb on - strand, within BT0296at 347.530 kb on - strand, within BT0296at 347.628 kb on + strand, within BT0296at 347.689 kb on - strand, within BT0296at 347.764 kb on - strand, within BT0296at 347.800 kb on - strand, within BT0296at 347.902 kb on - strand, within BT0296at 348.119 kb on - strand, within BT0296at 348.247 kb on - strand, within BT0296at 348.355 kb on - strand, within BT0296at 348.355 kb on - strand, within BT0296at 348.503 kb on - strand, within BT0296at 348.544 kb on - strand, within BT0296at 348.610 kb on - strand, within BT0296at 348.634 kb on - strand, within BT0296at 348.691 kb on - strand, within BT0296at 348.721 kb on - strand, within BT0296at 348.734 kb on - strandat 348.913 kb on - strandat 348.958 kb on + strandat 349.005 kb on + strandat 349.072 kb on - strandat 349.072 kb on - strandat 349.093 kb on + strandat 349.096 kb on + strandat 349.277 kb on - strand, within BT0297at 349.315 kb on - strand, within BT0297at 349.357 kb on - strand, within BT0297at 349.425 kb on - strand, within BT0297at 349.475 kb on - strand, within BT0297at 349.518 kb on + strand, within BT0297at 349.539 kb on - strand, within BT0297at 349.579 kb on + strand, within BT0297at 349.604 kb on + strand, within BT0297at 349.682 kb on + strand, within BT0297at 349.729 kb on - strand, within BT0297at 350.002 kb on + strand, within BT0297

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Dimetridazole 0.00625 mM
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344,749 - +0.6
344,799 - -0.7
344,863 - -0.4
344,863 - +0.6
344,940 - BT0295 0.11 +1.0
344,970 - BT0295 0.15 -0.4
345,229 + BT0295 0.44 -0.8
345,230 - BT0295 0.44 -1.2
345,230 - BT0295 0.44 +0.6
345,230 - BT0295 0.44 -0.4
345,288 - BT0295 0.50 -1.0
345,288 - BT0295 0.50 -1.0
345,400 - BT0295 0.63 -0.3
345,409 - BT0295 0.64 +2.2
345,445 - BT0295 0.68 -2.3
345,618 - BT0295 0.87 -1.6
345,646 + +0.6
345,695 - -2.0
345,757 - -0.4
345,758 + +0.0
345,758 + -0.9
345,758 + -2.1
345,762 + -2.1
345,910 - -0.4
345,935 - -1.7
345,973 - -1.0
345,979 - -1.0
346,067 - +1.9
346,092 + BT0296 0.10 -1.7
346,122 + BT0296 0.11 -0.7
346,125 + BT0296 0.11 +0.6
346,212 + BT0296 0.14 -3.1
346,297 + BT0296 0.17 -2.0
346,299 + BT0296 0.17 -2.9
346,309 - BT0296 0.17 -1.4
346,318 + BT0296 0.17 -1.4
346,352 - BT0296 0.18 +0.6
346,353 + BT0296 0.18 -1.7
346,354 - BT0296 0.18 -1.8
346,362 + BT0296 0.19 -0.7
346,363 - BT0296 0.19 -0.4
346,510 - BT0296 0.23 +1.6
346,510 - BT0296 0.23 -1.7
346,576 - BT0296 0.25 -2.2
346,578 - BT0296 0.25 -1.0
346,578 - BT0296 0.25 -3.0
346,637 - BT0296 0.27 -1.3
346,670 - BT0296 0.28 -0.4
346,839 - BT0296 0.33 -3.4
346,914 - BT0296 0.35 +0.6
346,918 - BT0296 0.35 +0.6
347,045 - BT0296 0.39 -1.3
347,072 - BT0296 0.40 -2.6
347,072 - BT0296 0.40 -2.0
347,072 - BT0296 0.40 +1.2
347,072 - BT0296 0.40 +1.6
347,148 - BT0296 0.42 -0.3
347,195 - BT0296 0.44 -0.4
347,284 + BT0296 0.46 -1.7
347,315 - BT0296 0.47 +0.0
347,367 + BT0296 0.49 -1.0
347,396 - BT0296 0.50 -0.7
347,397 + BT0296 0.50 -2.4
347,493 - BT0296 0.53 -0.7
347,508 - BT0296 0.53 +0.6
347,530 - BT0296 0.54 -1.4
347,628 + BT0296 0.57 -1.0
347,689 - BT0296 0.59 -3.2
347,764 - BT0296 0.61 +0.6
347,800 - BT0296 0.62 +0.1
347,902 - BT0296 0.65 -1.4
348,119 - BT0296 0.72 -1.4
348,247 - BT0296 0.76 -1.0
348,355 - BT0296 0.79 -1.1
348,355 - BT0296 0.79 -0.4
348,503 - BT0296 0.83 -0.4
348,544 - BT0296 0.85 -1.0
348,610 - BT0296 0.87 -1.1
348,634 - BT0296 0.87 -1.7
348,691 - BT0296 0.89 -1.6
348,721 - BT0296 0.90 -0.2
348,734 - -1.0
348,913 - -1.4
348,958 + +1.2
349,005 + -1.0
349,072 - +0.6
349,072 - +0.6
349,093 + +0.6
349,096 + -1.7
349,277 - BT0297 0.14 -1.4
349,315 - BT0297 0.16 -0.4
349,357 - BT0297 0.19 -1.0
349,425 - BT0297 0.23 +0.0
349,475 - BT0297 0.27 -0.2
349,518 + BT0297 0.30 -0.4
349,539 - BT0297 0.31 +0.6
349,579 + BT0297 0.34 -0.4
349,604 + BT0297 0.35 -1.4
349,682 + BT0297 0.41 -2.4
349,729 - BT0297 0.44 -1.0
350,002 + BT0297 0.62 +0.6

Or see this region's nucleotide sequence