Experiment: BHIS with Dimetridazole 0.00625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0042 and BT0043 are separated by 30 nucleotides BT0043 and BT0044 are separated by 10 nucleotides BT0044 and BT0045 overlap by 4 nucleotides
BT0042: BT0042 - conserved hypothetical protein (NCBI ptt file), at 39,215 to 40,375
BT0042
BT0043: BT0043 - putative glycosyltransferase (NCBI ptt file), at 40,406 to 40,582
BT0043
BT0044: BT0044 - putative glycosyltransferase (NCBI ptt file), at 40,593 to 41,537
BT0044
BT0045: BT0045 - putative polysaccharide biosynthesis protein (NCBI ptt file), at 41,534 to 42,700
BT0045
Position (kb) 40
41 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 39.408 kb on + strand, within BT0042 at 39.408 kb on + strand, within BT0042 at 39.455 kb on + strand, within BT0042 at 39.456 kb on - strand, within BT0042 at 39.466 kb on + strand, within BT0042 at 39.480 kb on - strand, within BT0042 at 39.544 kb on + strand, within BT0042 at 39.564 kb on - strand, within BT0042 at 39.637 kb on + strand, within BT0042 at 39.695 kb on + strand, within BT0042 at 39.763 kb on - strand, within BT0042 at 39.813 kb on + strand, within BT0042 at 40.165 kb on - strand, within BT0042 at 40.232 kb on - strand, within BT0042 at 40.282 kb on + strand at 40.306 kb on - strand at 40.333 kb on + strand at 40.435 kb on + strand, within BT0043 at 40.436 kb on - strand, within BT0043 at 40.442 kb on - strand, within BT0043 at 40.468 kb on + strand, within BT0043 at 40.468 kb on + strand, within BT0043 at 40.584 kb on - strand at 40.592 kb on - strand at 40.613 kb on - strand at 40.713 kb on - strand, within BT0044 at 40.775 kb on - strand, within BT0044 at 40.830 kb on - strand, within BT0044 at 40.830 kb on - strand, within BT0044 at 41.045 kb on + strand, within BT0044 at 41.076 kb on - strand at 41.167 kb on + strand, within BT0044 at 41.191 kb on - strand, within BT0044 at 41.202 kb on - strand, within BT0044 at 41.247 kb on - strand, within BT0044 at 41.395 kb on - strand, within BT0044 at 41.454 kb on + strand at 41.459 kb on - strand at 41.466 kb on + strand at 41.490 kb on + strand at 41.491 kb on - strand at 41.557 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Dimetridazole 0.00625 mM remove 39,408 + BT0042 0.17 +0.6 39,408 + BT0042 0.17 -0.9 39,455 + BT0042 0.21 -0.4 39,456 - BT0042 0.21 +0.2 39,466 + BT0042 0.22 -1.0 39,480 - BT0042 0.23 +0.6 39,544 + BT0042 0.28 -0.8 39,564 - BT0042 0.30 +0.6 39,637 + BT0042 0.36 +0.6 39,695 + BT0042 0.41 -1.0 39,763 - BT0042 0.47 -0.8 39,813 + BT0042 0.52 -0.4 40,165 - BT0042 0.82 +0.6 40,232 - BT0042 0.88 -0.4 40,282 + -0.4 40,306 - -0.9 40,333 + +0.6 40,435 + BT0043 0.16 -2.0 40,436 - BT0043 0.17 +0.6 40,442 - BT0043 0.20 -2.0 40,468 + BT0043 0.35 -0.4 40,468 + BT0043 0.35 -1.4 40,584 - -1.6 40,592 - -1.0 40,613 - -1.4 40,713 - BT0044 0.13 -1.6 40,775 - BT0044 0.19 -0.2 40,830 - BT0044 0.25 -2.0 40,830 - BT0044 0.25 +0.6 41,045 + BT0044 0.48 +0.6 41,076 - +0.6 41,167 + BT0044 0.61 -2.8 41,191 - BT0044 0.63 -2.0 41,202 - BT0044 0.64 -2.1 41,247 - BT0044 0.69 +0.6 41,395 - BT0044 0.85 -1.8 41,454 + -1.4 41,459 - -0.4 41,466 + -0.2 41,490 + -0.8 41,491 - -0.4 41,557 + -1.0
Or see this region's nucleotide sequence