Experiment: Pyruvate-Sulfate (60-15mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt era and DVU0053 are separated by 531 nucleotides DVU0053 and DVU0054 are separated by 429 nucleotides
DVU0052: era - GTP-binding protein Era (TIGR), at 56,847 to 57,773
era
DVU0053: DVU0053 - sulfate permease, putative (TIGR), at 58,305 to 60,077
DVU0053
DVU0054: DVU0054 - dihydrouridine synthase family protein (TIGR), at 60,507 to 61,766
DVU0054
Position (kb) 58
59
60
61 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 57.817 kb on - strand at 57.846 kb on - strand at 57.934 kb on - strand at 57.971 kb on + strand at 57.979 kb on - strand at 58.010 kb on + strand at 58.056 kb on - strand at 58.062 kb on + strand at 58.070 kb on - strand at 58.070 kb on - strand at 58.072 kb on + strand at 58.080 kb on - strand at 58.081 kb on + strand at 58.089 kb on - strand at 58.116 kb on - strand at 58.137 kb on + strand at 58.166 kb on + strand at 58.174 kb on - strand at 58.178 kb on + strand at 58.185 kb on + strand at 58.193 kb on - strand at 58.193 kb on - strand at 58.225 kb on + strand at 58.243 kb on - strand at 58.279 kb on - strand at 58.333 kb on + strand at 58.336 kb on - strand at 58.345 kb on + strand at 58.345 kb on + strand at 58.353 kb on - strand at 58.381 kb on - strand at 58.400 kb on + strand at 58.400 kb on + strand at 58.400 kb on + strand at 58.400 kb on + strand at 58.402 kb on + strand at 58.408 kb on - strand at 58.433 kb on + strand at 58.441 kb on - strand at 58.504 kb on - strand, within DVU0053 at 58.512 kb on + strand, within DVU0053 at 58.571 kb on + strand, within DVU0053 at 58.571 kb on - strand, within DVU0053 at 58.573 kb on - strand, within DVU0053 at 58.588 kb on - strand, within DVU0053 at 58.611 kb on + strand, within DVU0053 at 58.611 kb on + strand, within DVU0053 at 58.619 kb on - strand, within DVU0053 at 58.619 kb on - strand, within DVU0053 at 58.662 kb on + strand, within DVU0053 at 58.683 kb on + strand, within DVU0053 at 58.707 kb on + strand, within DVU0053 at 58.729 kb on + strand, within DVU0053 at 58.739 kb on + strand, within DVU0053 at 58.747 kb on - strand, within DVU0053 at 58.791 kb on + strand, within DVU0053 at 58.799 kb on - strand, within DVU0053 at 58.799 kb on - strand, within DVU0053 at 58.819 kb on - strand, within DVU0053 at 58.844 kb on - strand, within DVU0053 at 58.859 kb on + strand, within DVU0053 at 58.859 kb on + strand, within DVU0053 at 58.893 kb on + strand, within DVU0053 at 58.964 kb on + strand, within DVU0053 at 58.989 kb on + strand, within DVU0053 at 58.995 kb on - strand, within DVU0053 at 58.995 kb on - strand, within DVU0053 at 59.006 kb on - strand, within DVU0053 at 59.008 kb on - strand, within DVU0053 at 59.070 kb on - strand, within DVU0053 at 59.072 kb on + strand, within DVU0053 at 59.072 kb on + strand, within DVU0053 at 59.072 kb on + strand, within DVU0053 at 59.080 kb on - strand, within DVU0053 at 59.109 kb on + strand, within DVU0053 at 59.117 kb on - strand, within DVU0053 at 59.117 kb on - strand, within DVU0053 at 59.128 kb on - strand, within DVU0053 at 59.144 kb on + strand, within DVU0053 at 59.152 kb on - strand, within DVU0053 at 59.192 kb on - strand, within DVU0053 at 59.256 kb on + strand, within DVU0053 at 59.288 kb on + strand, within DVU0053 at 59.288 kb on + strand, within DVU0053 at 59.290 kb on + strand, within DVU0053 at 59.298 kb on - strand, within DVU0053 at 59.308 kb on - strand, within DVU0053 at 59.354 kb on + strand, within DVU0053 at 59.362 kb on - strand, within DVU0053 at 59.395 kb on - strand, within DVU0053 at 59.402 kb on + strand, within DVU0053 at 59.410 kb on - strand, within DVU0053 at 59.412 kb on - strand, within DVU0053 at 59.446 kb on + strand, within DVU0053 at 59.463 kb on + strand, within DVU0053 at 59.463 kb on + strand, within DVU0053 at 59.463 kb on + strand, within DVU0053 at 59.468 kb on + strand, within DVU0053 at 59.468 kb on + strand, within DVU0053 at 59.468 kb on + strand, within DVU0053 at 59.471 kb on - strand, within DVU0053 at 59.471 kb on - strand, within DVU0053 at 59.471 kb on - strand, within DVU0053 at 59.471 kb on - strand, within DVU0053 at 59.476 kb on - strand, within DVU0053 at 59.526 kb on + strand, within DVU0053 at 59.544 kb on - strand, within DVU0053 at 59.544 kb on - strand, within DVU0053 at 59.614 kb on + strand, within DVU0053 at 59.635 kb on + strand, within DVU0053 at 59.643 kb on - strand, within DVU0053 at 59.767 kb on + strand, within DVU0053 at 59.775 kb on - strand, within DVU0053 at 59.775 kb on - strand, within DVU0053 at 59.775 kb on - strand, within DVU0053 at 59.789 kb on - strand, within DVU0053 at 59.827 kb on + strand, within DVU0053 at 59.829 kb on - strand, within DVU0053 at 59.848 kb on + strand, within DVU0053 at 59.856 kb on - strand, within DVU0053 at 59.856 kb on - strand, within DVU0053 at 59.927 kb on + strand at 59.927 kb on + strand at 59.927 kb on + strand at 59.935 kb on - strand at 59.935 kb on - strand at 59.935 kb on - strand at 59.935 kb on - strand at 59.940 kb on - strand at 59.987 kb on + strand at 60.043 kb on - strand at 60.049 kb on - strand at 60.066 kb on - strand at 60.071 kb on + strand at 60.071 kb on + strand at 60.079 kb on - strand at 60.142 kb on + strand at 60.267 kb on + strand at 60.267 kb on + strand at 60.268 kb on - strand at 60.275 kb on - strand at 60.275 kb on - strand at 60.295 kb on - strand at 60.353 kb on - strand at 60.397 kb on - strand at 60.436 kb on + strand at 60.444 kb on - strand at 60.444 kb on - strand at 60.444 kb on - strand at 60.521 kb on + strand at 60.529 kb on - strand at 60.599 kb on + strand at 60.634 kb on + strand, within DVU0054 at 60.634 kb on + strand, within DVU0054 at 60.642 kb on - strand, within DVU0054 at 60.660 kb on + strand, within DVU0054 at 60.768 kb on + strand, within DVU0054 at 60.851 kb on + strand, within DVU0054 at 60.881 kb on - strand, within DVU0054 at 60.893 kb on + strand, within DVU0054 at 60.896 kb on - strand, within DVU0054 at 60.956 kb on + strand, within DVU0054 at 60.956 kb on - strand, within DVU0054 at 60.957 kb on + strand, within DVU0054 at 60.964 kb on - strand, within DVU0054 at 60.964 kb on - strand, within DVU0054 at 60.964 kb on - strand, within DVU0054 at 60.968 kb on + strand, within DVU0054 at 61.003 kb on + strand, within DVU0054 at 61.037 kb on - strand, within DVU0054 at 61.058 kb on - strand, within DVU0054 at 61.067 kb on + strand, within DVU0054 at 61.067 kb on + strand, within DVU0054 at 61.072 kb on + strand, within DVU0054 at 61.075 kb on - strand, within DVU0054
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Molybdate 100uM remove 57,817 - -0.5 57,846 - -0.1 57,934 - -0.0 57,971 + -0.3 57,979 - +0.4 58,010 + -1.1 58,056 - -3.7 58,062 + +0.4 58,070 - +0.7 58,070 - +0.1 58,072 + +0.4 58,080 - -0.2 58,081 + +1.2 58,089 - -1.4 58,116 - +0.4 58,137 + +0.3 58,166 + -0.1 58,174 - +0.6 58,178 + +0.2 58,185 + +0.3 58,193 - +0.0 58,193 - +0.2 58,225 + -0.1 58,243 - +0.5 58,279 - +0.1 58,333 + +0.4 58,336 - +0.3 58,345 + -0.2 58,345 + -0.1 58,353 - +0.3 58,381 - +1.0 58,400 + +0.0 58,400 + +0.1 58,400 + +0.5 58,400 + +0.6 58,402 + -2.0 58,408 - -0.2 58,433 + +0.3 58,441 - -1.9 58,504 - DVU0053 0.11 -4.0 58,512 + DVU0053 0.12 -0.2 58,571 + DVU0053 0.15 +0.3 58,571 - DVU0053 0.15 -0.3 58,573 - DVU0053 0.15 +0.1 58,588 - DVU0053 0.16 -0.4 58,611 + DVU0053 0.17 +0.1 58,611 + DVU0053 0.17 +0.2 58,619 - DVU0053 0.18 -1.5 58,619 - DVU0053 0.18 -0.7 58,662 + DVU0053 0.20 +0.1 58,683 + DVU0053 0.21 -0.0 58,707 + DVU0053 0.23 +0.1 58,729 + DVU0053 0.24 -0.1 58,739 + DVU0053 0.24 -0.1 58,747 - DVU0053 0.25 -0.2 58,791 + DVU0053 0.27 -0.3 58,799 - DVU0053 0.28 -0.2 58,799 - DVU0053 0.28 -0.3 58,819 - DVU0053 0.29 -0.1 58,844 - DVU0053 0.30 +0.3 58,859 + DVU0053 0.31 -0.3 58,859 + DVU0053 0.31 -0.6 58,893 + DVU0053 0.33 -1.0 58,964 + DVU0053 0.37 +0.3 58,989 + DVU0053 0.39 -0.4 58,995 - DVU0053 0.39 -0.5 58,995 - DVU0053 0.39 -0.5 59,006 - DVU0053 0.40 +0.1 59,008 - DVU0053 0.40 -1.9 59,070 - DVU0053 0.43 -0.5 59,072 + DVU0053 0.43 -0.6 59,072 + DVU0053 0.43 -0.5 59,072 + DVU0053 0.43 -0.3 59,080 - DVU0053 0.44 -0.2 59,109 + DVU0053 0.45 -1.0 59,117 - DVU0053 0.46 -0.1 59,117 - DVU0053 0.46 -0.2 59,128 - DVU0053 0.46 +0.9 59,144 + DVU0053 0.47 +1.4 59,152 - DVU0053 0.48 +0.7 59,192 - DVU0053 0.50 -2.0 59,256 + DVU0053 0.54 +0.2 59,288 + DVU0053 0.55 -0.0 59,288 + DVU0053 0.55 -0.1 59,290 + DVU0053 0.56 +0.3 59,298 - DVU0053 0.56 -0.0 59,308 - DVU0053 0.57 -1.9 59,354 + DVU0053 0.59 -1.2 59,362 - DVU0053 0.60 +1.2 59,395 - DVU0053 0.61 +0.2 59,402 + DVU0053 0.62 -0.3 59,410 - DVU0053 0.62 +0.1 59,412 - DVU0053 0.62 +0.2 59,446 + DVU0053 0.64 -0.5 59,463 + DVU0053 0.65 -0.2 59,463 + DVU0053 0.65 -0.2 59,463 + DVU0053 0.65 +0.1 59,468 + DVU0053 0.66 -0.3 59,468 + DVU0053 0.66 -0.5 59,468 + DVU0053 0.66 -2.4 59,471 - DVU0053 0.66 +0.6 59,471 - DVU0053 0.66 -0.3 59,471 - DVU0053 0.66 -3.8 59,471 - DVU0053 0.66 +0.1 59,476 - DVU0053 0.66 -1.6 59,526 + DVU0053 0.69 -0.4 59,544 - DVU0053 0.70 +0.2 59,544 - DVU0053 0.70 +0.0 59,614 + DVU0053 0.74 -0.1 59,635 + DVU0053 0.75 +0.9 59,643 - DVU0053 0.75 +0.6 59,767 + DVU0053 0.82 -0.3 59,775 - DVU0053 0.83 -0.4 59,775 - DVU0053 0.83 -0.8 59,775 - DVU0053 0.83 -1.8 59,789 - DVU0053 0.84 -0.7 59,827 + DVU0053 0.86 +0.0 59,829 - DVU0053 0.86 +0.4 59,848 + DVU0053 0.87 -0.2 59,856 - DVU0053 0.87 +1.9 59,856 - DVU0053 0.87 +0.5 59,927 + -0.0 59,927 + -0.4 59,927 + +0.9 59,935 - +0.9 59,935 - -1.7 59,935 - +0.0 59,935 - +0.0 59,940 - -0.7 59,987 + -0.0 60,043 - +0.2 60,049 - -0.4 60,066 - +0.0 60,071 + -0.3 60,071 + +0.2 60,079 - -0.2 60,142 + -0.3 60,267 + +0.9 60,267 + -0.2 60,268 - +0.6 60,275 - +0.0 60,275 - -0.6 60,295 - +0.1 60,353 - +0.0 60,397 - +0.3 60,436 + -0.2 60,444 - -0.5 60,444 - +0.7 60,444 - -2.1 60,521 + +0.7 60,529 - -0.0 60,599 + +0.7 60,634 + DVU0054 0.10 -0.9 60,634 + DVU0054 0.10 +0.2 60,642 - DVU0054 0.11 -0.1 60,660 + DVU0054 0.12 -0.8 60,768 + DVU0054 0.21 -0.3 60,851 + DVU0054 0.27 -0.5 60,881 - DVU0054 0.30 -0.8 60,893 + DVU0054 0.31 +1.2 60,896 - DVU0054 0.31 +0.0 60,956 + DVU0054 0.36 -1.3 60,956 - DVU0054 0.36 -0.5 60,957 + DVU0054 0.36 -4.2 60,964 - DVU0054 0.36 +0.2 60,964 - DVU0054 0.36 -0.1 60,964 - DVU0054 0.36 -2.5 60,968 + DVU0054 0.37 +0.2 61,003 + DVU0054 0.39 +0.9 61,037 - DVU0054 0.42 +0.0 61,058 - DVU0054 0.44 +0.4 61,067 + DVU0054 0.44 -0.3 61,067 + DVU0054 0.44 +0.6 61,072 + DVU0054 0.45 -0.2 61,075 - DVU0054 0.45 -0.0
Or see this region's nucleotide sequence