Experiment: m.b. 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_228 and HP15_227 overlap by 2 nucleotides HP15_227 and HP15_229 are separated by 256 nucleotides HP15_229 and HP15_230 are separated by 64 nucleotides HP15_230 and HP15_231 are separated by 1 nucleotides HP15_231 and HP15_232 are separated by 23 nucleotides
HP15_228: HP15_228 - guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase, at 213,124 to 214,566
_228
HP15_227: HP15_227 - hypothetical protein, at 214,565 to 214,669
_227
HP15_229: HP15_229 - thioredoxin, at 214,926 to 215,270
_229
HP15_230: HP15_230 - molybdenum cofactor biosynthesis protein E, at 215,335 to 215,781
_230
HP15_231: HP15_231 - thiamineS, at 215,783 to 216,022
_231
HP15_232: HP15_232 - molybdenum cofactor synthesis domain protein, at 216,046 to 217,260
_232
Position (kb) 215
216 Strain fitness (log2 ratio) -1
0
1
2 at 214.406 kb on + strand, within HP15_228 at 214.414 kb on - strand, within HP15_228 at 214.414 kb on - strand, within HP15_228 at 214.446 kb on - strand at 214.651 kb on - strand, within HP15_227 at 214.743 kb on + strand at 214.767 kb on - strand at 214.778 kb on + strand at 214.802 kb on + strand at 214.871 kb on - strand at 215.032 kb on - strand, within HP15_229 at 215.397 kb on - strand, within HP15_230 at 215.441 kb on - strand, within HP15_230 at 215.482 kb on - strand, within HP15_230 at 215.486 kb on + strand, within HP15_230 at 215.500 kb on + strand, within HP15_230 at 215.523 kb on + strand, within HP15_230 at 215.531 kb on - strand, within HP15_230 at 215.531 kb on - strand, within HP15_230 at 215.531 kb on - strand, within HP15_230 at 215.575 kb on - strand, within HP15_230 at 215.575 kb on - strand, within HP15_230 at 215.671 kb on + strand, within HP15_230 at 215.674 kb on - strand, within HP15_230 at 215.674 kb on - strand, within HP15_230 at 215.720 kb on + strand, within HP15_230 at 215.897 kb on - strand, within HP15_231 at 216.049 kb on + strand at 216.049 kb on + strand at 216.049 kb on + strand at 216.312 kb on - strand, within HP15_232 at 216.362 kb on - strand, within HP15_232 at 216.428 kb on + strand, within HP15_232 at 216.487 kb on - strand, within HP15_232 at 216.534 kb on - strand, within HP15_232 at 216.539 kb on - strand, within HP15_232 at 216.593 kb on + strand, within HP15_232 at 216.642 kb on + strand, within HP15_232 at 216.650 kb on - strand, within HP15_232 at 216.677 kb on - strand, within HP15_232 at 216.677 kb on - strand, within HP15_232 at 216.677 kb on - strand, within HP15_232
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 5-Hydroxymethylfurfural 5 mM remove 214,406 + HP15_228 0.89 +0.4 214,414 - HP15_228 0.89 -1.6 214,414 - HP15_228 0.89 -0.5 214,446 - -0.6 214,651 - HP15_227 0.82 -0.1 214,743 + -0.2 214,767 - +0.5 214,778 + -0.0 214,802 + +0.7 214,871 - +1.0 215,032 - HP15_229 0.31 +2.3 215,397 - HP15_230 0.14 -0.1 215,441 - HP15_230 0.24 +0.4 215,482 - HP15_230 0.33 -0.0 215,486 + HP15_230 0.34 +0.1 215,500 + HP15_230 0.37 +0.1 215,523 + HP15_230 0.42 +0.0 215,531 - HP15_230 0.44 -0.5 215,531 - HP15_230 0.44 +0.1 215,531 - HP15_230 0.44 -0.3 215,575 - HP15_230 0.54 +0.3 215,575 - HP15_230 0.54 -0.1 215,671 + HP15_230 0.75 -0.1 215,674 - HP15_230 0.76 -0.1 215,674 - HP15_230 0.76 +0.5 215,720 + HP15_230 0.86 +0.0 215,897 - HP15_231 0.47 +0.0 216,049 + -0.3 216,049 + -0.1 216,049 + +0.2 216,312 - HP15_232 0.22 -0.9 216,362 - HP15_232 0.26 +0.4 216,428 + HP15_232 0.31 -1.4 216,487 - HP15_232 0.36 -0.0 216,534 - HP15_232 0.40 +0.2 216,539 - HP15_232 0.41 +0.3 216,593 + HP15_232 0.45 +0.1 216,642 + HP15_232 0.49 -0.1 216,650 - HP15_232 0.50 -0.1 216,677 - HP15_232 0.52 -0.2 216,677 - HP15_232 0.52 +0.4 216,677 - HP15_232 0.52 +0.4
Or see this region's nucleotide sequence