Experiment: Pyruvate-Sulfate (60-15mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2020 and DVU2021 overlap by 4 nucleotides DVU2021 and DVU2022 overlap by 1 nucleotides DVU2022 and DVU2023 are separated by 4 nucleotides DVU2023 and DVU2024 overlap by 4 nucleotides
DVU2020: DVU2020 - conserved hypothetical protein (TIGR), at 2,098,260 to 2,100,758
DVU2020
DVU2021: DVU2021 - hypothetical protein (TIGR), at 2,100,755 to 2,101,222
DVU2021
DVU2022: DVU2022 - conserved hypothetical protein (TIGR), at 2,101,222 to 2,104,698
DVU2022
DVU2023: DVU2023 - hypothetical protein (TIGR), at 2,104,703 to 2,105,242
DVU2023
DVU2024: DVU2024 - conserved hypothetical protein (TIGR), at 2,105,239 to 2,106,303
DVU2024
Position (kb)
2101
2102
2103
2104
2105 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2100.414 kb on + strand, within DVU2020 at 2100.528 kb on - strand at 2100.558 kb on - strand at 2100.899 kb on - strand, within DVU2021 at 2101.154 kb on - strand, within DVU2021 at 2101.330 kb on - strand at 2101.342 kb on - strand at 2101.419 kb on - strand at 2101.484 kb on + strand at 2101.505 kb on + strand at 2101.547 kb on + strand at 2101.547 kb on + strand at 2101.555 kb on - strand at 2101.555 kb on - strand at 2101.572 kb on + strand, within DVU2022 at 2101.639 kb on - strand, within DVU2022 at 2101.662 kb on + strand, within DVU2022 at 2101.679 kb on + strand, within DVU2022 at 2101.687 kb on - strand, within DVU2022 at 2101.687 kb on - strand, within DVU2022 at 2101.816 kb on - strand, within DVU2022 at 2101.873 kb on - strand, within DVU2022 at 2101.897 kb on - strand, within DVU2022 at 2101.936 kb on + strand, within DVU2022 at 2102.005 kb on - strand, within DVU2022 at 2102.033 kb on - strand, within DVU2022 at 2102.038 kb on + strand, within DVU2022 at 2102.038 kb on + strand, within DVU2022 at 2102.145 kb on + strand, within DVU2022 at 2102.195 kb on - strand, within DVU2022 at 2102.522 kb on - strand, within DVU2022 at 2102.911 kb on - strand, within DVU2022 at 2103.450 kb on + strand, within DVU2022 at 2103.495 kb on + strand, within DVU2022 at 2103.506 kb on + strand, within DVU2022 at 2103.509 kb on - strand, within DVU2022 at 2103.514 kb on - strand, within DVU2022 at 2103.529 kb on - strand, within DVU2022 at 2103.646 kb on + strand, within DVU2022 at 2103.650 kb on + strand, within DVU2022 at 2103.655 kb on + strand, within DVU2022 at 2103.660 kb on + strand, within DVU2022 at 2103.719 kb on - strand, within DVU2022 at 2103.748 kb on + strand, within DVU2022 at 2103.773 kb on + strand, within DVU2022 at 2103.773 kb on + strand, within DVU2022 at 2103.781 kb on - strand, within DVU2022 at 2103.781 kb on - strand, within DVU2022 at 2103.789 kb on + strand, within DVU2022 at 2103.950 kb on - strand, within DVU2022 at 2103.995 kb on + strand, within DVU2022 at 2104.002 kb on + strand, within DVU2022 at 2104.216 kb on - strand, within DVU2022 at 2104.289 kb on + strand, within DVU2022 at 2104.289 kb on + strand, within DVU2022 at 2104.330 kb on - strand, within DVU2022 at 2104.388 kb on + strand at 2104.422 kb on + strand at 2104.422 kb on + strand at 2104.470 kb on - strand at 2104.583 kb on + strand at 2104.603 kb on + strand at 2104.727 kb on + strand at 2104.777 kb on + strand, within DVU2023 at 2104.799 kb on + strand, within DVU2023 at 2104.805 kb on + strand, within DVU2023 at 2104.805 kb on + strand, within DVU2023 at 2104.805 kb on + strand, within DVU2023 at 2104.805 kb on + strand, within DVU2023 at 2104.813 kb on - strand, within DVU2023 at 2104.813 kb on - strand, within DVU2023 at 2105.073 kb on + strand, within DVU2023 at 2105.083 kb on - strand, within DVU2023 at 2105.197 kb on - strand at 2105.197 kb on - strand at 2105.405 kb on + strand, within DVU2024 at 2105.405 kb on + strand, within DVU2024 at 2105.455 kb on - strand, within DVU2024 at 2105.555 kb on + strand, within DVU2024 at 2105.555 kb on + strand, within DVU2024 at 2105.563 kb on - strand, within DVU2024
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Molybdate 100uM remove 2,100,414 + DVU2020 0.86 +0.1 2,100,528 - +0.6 2,100,558 - +0.1 2,100,899 - DVU2021 0.31 -0.4 2,101,154 - DVU2021 0.85 +1.3 2,101,330 - -0.2 2,101,342 - -0.5 2,101,419 - +0.4 2,101,484 + +0.4 2,101,505 + +0.4 2,101,547 + -3.3 2,101,547 + +0.3 2,101,555 - -0.0 2,101,555 - +0.4 2,101,572 + DVU2022 0.10 +0.5 2,101,639 - DVU2022 0.12 -0.5 2,101,662 + DVU2022 0.13 +0.3 2,101,679 + DVU2022 0.13 +0.6 2,101,687 - DVU2022 0.13 +2.6 2,101,687 - DVU2022 0.13 -0.4 2,101,816 - DVU2022 0.17 +0.4 2,101,873 - DVU2022 0.19 +0.6 2,101,897 - DVU2022 0.19 +1.0 2,101,936 + DVU2022 0.21 +1.3 2,102,005 - DVU2022 0.23 +1.0 2,102,033 - DVU2022 0.23 +0.6 2,102,038 + DVU2022 0.23 +0.7 2,102,038 + DVU2022 0.23 +0.3 2,102,145 + DVU2022 0.27 -0.8 2,102,195 - DVU2022 0.28 +0.8 2,102,522 - DVU2022 0.37 -3.4 2,102,911 - DVU2022 0.49 -1.1 2,103,450 + DVU2022 0.64 +0.3 2,103,495 + DVU2022 0.65 -0.5 2,103,506 + DVU2022 0.66 +0.5 2,103,509 - DVU2022 0.66 +1.3 2,103,514 - DVU2022 0.66 -0.3 2,103,529 - DVU2022 0.66 +0.7 2,103,646 + DVU2022 0.70 +0.2 2,103,650 + DVU2022 0.70 +0.7 2,103,655 + DVU2022 0.70 -0.9 2,103,660 + DVU2022 0.70 +0.3 2,103,719 - DVU2022 0.72 -0.3 2,103,748 + DVU2022 0.73 +2.6 2,103,773 + DVU2022 0.73 +0.4 2,103,773 + DVU2022 0.73 +0.6 2,103,781 - DVU2022 0.74 +1.3 2,103,781 - DVU2022 0.74 -0.4 2,103,789 + DVU2022 0.74 +1.0 2,103,950 - DVU2022 0.78 +0.1 2,103,995 + DVU2022 0.80 -0.2 2,104,002 + DVU2022 0.80 +0.6 2,104,216 - DVU2022 0.86 +0.8 2,104,289 + DVU2022 0.88 +1.0 2,104,289 + DVU2022 0.88 +1.1 2,104,330 - DVU2022 0.89 +0.1 2,104,388 + +0.4 2,104,422 + +0.6 2,104,422 + +0.3 2,104,470 - +0.4 2,104,583 + +0.4 2,104,603 + +0.2 2,104,727 + -0.5 2,104,777 + DVU2023 0.14 +0.4 2,104,799 + DVU2023 0.18 -1.3 2,104,805 + DVU2023 0.19 -0.1 2,104,805 + DVU2023 0.19 +0.3 2,104,805 + DVU2023 0.19 -0.4 2,104,805 + DVU2023 0.19 +1.0 2,104,813 - DVU2023 0.20 -0.2 2,104,813 - DVU2023 0.20 +0.0 2,105,073 + DVU2023 0.69 -0.1 2,105,083 - DVU2023 0.70 -0.6 2,105,197 - -0.3 2,105,197 - +0.2 2,105,405 + DVU2024 0.16 -0.3 2,105,405 + DVU2024 0.16 -0.4 2,105,455 - DVU2024 0.20 +0.5 2,105,555 + DVU2024 0.30 -0.6 2,105,555 + DVU2024 0.30 +0.1 2,105,563 - DVU2024 0.30 -0.1
Or see this region's nucleotide sequence