Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0876

Experiment: BHIS with Thioridazine 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0875 and BT0876 are separated by 36 nucleotidesBT0876 and BT0877 are separated by 70 nucleotidesBT0877 and BT0878 are separated by 86 nucleotides BT0875: BT0875 - beta-ureidopropionase (NCBI ptt file), at 1,076,614 to 1,077,498 BT0875 BT0876: BT0876 - conserved hypothetical protein (NCBI ptt file), at 1,077,535 to 1,078,650 BT0876 BT0877: BT0877 - ferredoxin domain containing protein (NCBI ptt file), at 1,078,721 to 1,079,263 BT0877 BT0878: BT0878 - ABC transporter, ATP-binding protein (NCBI ptt file), at 1,079,350 to 1,079,970 BT0878 Position (kb) 1077 1078 1079Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1076.547 kb on + strandat 1076.597 kb on - strandat 1076.723 kb on - strand, within BT0875at 1076.806 kb on + strand, within BT0875at 1076.906 kb on - strand, within BT0875at 1076.976 kb on - strand, within BT0875at 1077.043 kb on + strand, within BT0875at 1077.044 kb on - strand, within BT0875at 1077.110 kb on + strand, within BT0875at 1077.204 kb on + strand, within BT0875at 1077.212 kb on - strand, within BT0875at 1077.253 kb on + strand, within BT0875at 1077.481 kb on + strandat 1077.506 kb on - strandat 1077.514 kb on - strandat 1077.521 kb on + strandat 1077.833 kb on - strand, within BT0876at 1078.028 kb on - strand, within BT0876at 1078.475 kb on + strand, within BT0876at 1078.717 kb on + strandat 1078.723 kb on - strandat 1078.723 kb on - strandat 1078.925 kb on - strand, within BT0877at 1079.028 kb on - strand, within BT0877at 1079.099 kb on - strand, within BT0877at 1079.223 kb on - strandat 1079.223 kb on - strandat 1079.225 kb on + strandat 1079.228 kb on - strandat 1079.318 kb on - strandat 1079.355 kb on - strandat 1079.358 kb on + strandat 1079.443 kb on - strand, within BT0878at 1079.558 kb on + strand, within BT0878

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Thioridazine 0.025 mM
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1,076,547 + +0.1
1,076,597 - -2.8
1,076,723 - BT0875 0.12 -1.8
1,076,806 + BT0875 0.22 -0.3
1,076,906 - BT0875 0.33 -3.4
1,076,976 - BT0875 0.41 -3.6
1,077,043 + BT0875 0.48 -1.8
1,077,044 - BT0875 0.49 +0.7
1,077,110 + BT0875 0.56 -0.7
1,077,204 + BT0875 0.67 -0.9
1,077,212 - BT0875 0.68 -3.3
1,077,253 + BT0875 0.72 -2.3
1,077,481 + -0.8
1,077,506 - +0.3
1,077,514 - -0.3
1,077,521 + +0.3
1,077,833 - BT0876 0.27 +4.5
1,078,028 - BT0876 0.44 +1.7
1,078,475 + BT0876 0.84 -2.3
1,078,717 + +2.3
1,078,723 - +2.0
1,078,723 - -1.3
1,078,925 - BT0877 0.38 -1.6
1,079,028 - BT0877 0.57 -0.3
1,079,099 - BT0877 0.70 -1.5
1,079,223 - -1.6
1,079,223 - -2.0
1,079,225 + +2.2
1,079,228 - -2.3
1,079,318 - -3.1
1,079,355 - -2.7
1,079,358 + +1.3
1,079,443 - BT0878 0.15 +1.9
1,079,558 + BT0878 0.33 +2.5

Or see this region's nucleotide sequence