Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2793

Experiment: Pyruvate-Sulfate (60-15mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2792 and DVU2793 are separated by 137 nucleotidesDVU2793 and DVU2794 are separated by 2 nucleotidesDVU2794 and nqr4 are separated by 11 nucleotides DVU2792: DVU2792 - NADH:quinone oxidoreductase subunit RnfC (Shelley Haveman), at 2,894,645 to 2,895,850 DVU2792 DVU2793: DVU2793 - electron transport complex protein RnfD, putative (TIGR), at 2,895,988 to 2,896,944 DVU2793 DVU2794: DVU2794 - NADH:quinone oxidoreductase subunit RnfG (Shelley Haveman), at 2,896,947 to 2,897,522 DVU2794 DVU2795: nqr4 - NADH:quinone oxidoreductase subunit RnfE (Shelley Haveman), at 2,897,534 to 2,898,205 nqr4 Position (kb) 2895 2896 2897Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2895.013 kb on - strand, within DVU2792at 2895.029 kb on - strand, within DVU2792at 2895.341 kb on + strand, within DVU2792at 2895.377 kb on + strand, within DVU2792at 2895.385 kb on - strand, within DVU2792at 2895.438 kb on + strand, within DVU2792at 2895.621 kb on + strand, within DVU2792at 2895.648 kb on - strand, within DVU2792at 2895.706 kb on + strand, within DVU2792at 2895.721 kb on + strand, within DVU2792at 2895.758 kb on - strandat 2895.758 kb on - strandat 2895.795 kb on - strandat 2895.795 kb on - strandat 2895.953 kb on + strandat 2896.028 kb on + strandat 2896.060 kb on + strandat 2896.060 kb on + strandat 2896.068 kb on - strandat 2896.092 kb on - strand, within DVU2793at 2896.103 kb on - strand, within DVU2793at 2896.115 kb on + strand, within DVU2793at 2896.122 kb on + strand, within DVU2793at 2896.238 kb on - strand, within DVU2793at 2896.262 kb on - strand, within DVU2793at 2896.364 kb on - strand, within DVU2793at 2896.404 kb on + strand, within DVU2793at 2896.409 kb on + strand, within DVU2793at 2896.425 kb on + strand, within DVU2793at 2896.440 kb on + strand, within DVU2793at 2896.448 kb on - strand, within DVU2793at 2896.506 kb on - strand, within DVU2793at 2896.558 kb on + strand, within DVU2793at 2896.571 kb on - strand, within DVU2793at 2896.607 kb on + strand, within DVU2793at 2896.653 kb on - strand, within DVU2793at 2896.682 kb on + strand, within DVU2793at 2896.724 kb on + strand, within DVU2793at 2896.724 kb on + strand, within DVU2793at 2896.734 kb on + strand, within DVU2793at 2896.742 kb on - strand, within DVU2793at 2896.776 kb on - strand, within DVU2793at 2896.832 kb on - strand, within DVU2793at 2896.913 kb on - strandat 2896.913 kb on - strandat 2897.067 kb on + strand, within DVU2794at 2897.142 kb on - strand, within DVU2794at 2897.144 kb on + strand, within DVU2794at 2897.234 kb on - strand, within DVU2794at 2897.271 kb on + strand, within DVU2794at 2897.310 kb on - strand, within DVU2794at 2897.360 kb on + strand, within DVU2794at 2897.360 kb on + strand, within DVU2794at 2897.477 kb on + strandat 2897.477 kb on + strandat 2897.485 kb on - strandat 2897.489 kb on + strandat 2897.511 kb on - strandat 2897.616 kb on - strand, within nqr4at 2897.832 kb on + strand, within nqr4at 2897.857 kb on - strand, within nqr4

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Molybdate 100uM
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2,895,013 - DVU2792 0.31 -2.3
2,895,029 - DVU2792 0.32 -0.3
2,895,341 + DVU2792 0.58 -2.6
2,895,377 + DVU2792 0.61 -1.6
2,895,385 - DVU2792 0.61 -1.5
2,895,438 + DVU2792 0.66 -1.8
2,895,621 + DVU2792 0.81 -1.8
2,895,648 - DVU2792 0.83 -2.2
2,895,706 + DVU2792 0.88 -1.5
2,895,721 + DVU2792 0.89 -2.1
2,895,758 - -1.6
2,895,758 - +0.4
2,895,795 - -2.1
2,895,795 - -1.8
2,895,953 + -1.1
2,896,028 + -1.2
2,896,060 + -2.4
2,896,060 + -2.0
2,896,068 - -3.1
2,896,092 - DVU2793 0.11 -2.0
2,896,103 - DVU2793 0.12 -2.0
2,896,115 + DVU2793 0.13 -2.0
2,896,122 + DVU2793 0.14 -2.2
2,896,238 - DVU2793 0.26 -1.4
2,896,262 - DVU2793 0.29 -2.4
2,896,364 - DVU2793 0.39 -1.0
2,896,404 + DVU2793 0.43 -1.5
2,896,409 + DVU2793 0.44 -2.6
2,896,425 + DVU2793 0.46 -2.1
2,896,440 + DVU2793 0.47 -2.1
2,896,448 - DVU2793 0.48 -0.3
2,896,506 - DVU2793 0.54 -2.2
2,896,558 + DVU2793 0.60 -1.9
2,896,571 - DVU2793 0.61 -2.4
2,896,607 + DVU2793 0.65 -1.6
2,896,653 - DVU2793 0.69 -0.5
2,896,682 + DVU2793 0.73 -2.2
2,896,724 + DVU2793 0.77 -3.0
2,896,724 + DVU2793 0.77 -2.1
2,896,734 + DVU2793 0.78 -3.1
2,896,742 - DVU2793 0.79 -0.1
2,896,776 - DVU2793 0.82 -4.2
2,896,832 - DVU2793 0.88 -1.9
2,896,913 - -0.2
2,896,913 - -2.2
2,897,067 + DVU2794 0.21 -1.8
2,897,142 - DVU2794 0.34 -1.7
2,897,144 + DVU2794 0.34 -1.8
2,897,234 - DVU2794 0.50 -2.4
2,897,271 + DVU2794 0.56 -0.7
2,897,310 - DVU2794 0.63 -1.6
2,897,360 + DVU2794 0.72 -2.2
2,897,360 + DVU2794 0.72 +0.1
2,897,477 + -2.0
2,897,477 + -1.8
2,897,485 - -2.1
2,897,489 + -1.1
2,897,511 - -2.6
2,897,616 - nqr4 DVU2795 0.12 +0.5
2,897,832 + nqr4 DVU2795 0.44 -0.5
2,897,857 - nqr4 DVU2795 0.48 -0.9

Or see this region's nucleotide sequence