Experiment: Pyruvate-Sulfate (60-15mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2792 and DVU2793 are separated by 137 nucleotides DVU2793 and DVU2794 are separated by 2 nucleotides DVU2794 and nqr4 are separated by 11 nucleotides
DVU2792: DVU2792 - NADH:quinone oxidoreductase subunit RnfC (Shelley Haveman), at 2,894,645 to 2,895,850
DVU2792
DVU2793: DVU2793 - electron transport complex protein RnfD, putative (TIGR), at 2,895,988 to 2,896,944
DVU2793
DVU2794: DVU2794 - NADH:quinone oxidoreductase subunit RnfG (Shelley Haveman), at 2,896,947 to 2,897,522
DVU2794
DVU2795: nqr4 - NADH:quinone oxidoreductase subunit RnfE (Shelley Haveman), at 2,897,534 to 2,898,205
nqr4
Position (kb)
2895
2896
2897 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2895.013 kb on - strand, within DVU2792 at 2895.029 kb on - strand, within DVU2792 at 2895.341 kb on + strand, within DVU2792 at 2895.377 kb on + strand, within DVU2792 at 2895.385 kb on - strand, within DVU2792 at 2895.438 kb on + strand, within DVU2792 at 2895.621 kb on + strand, within DVU2792 at 2895.648 kb on - strand, within DVU2792 at 2895.706 kb on + strand, within DVU2792 at 2895.721 kb on + strand, within DVU2792 at 2895.758 kb on - strand at 2895.758 kb on - strand at 2895.795 kb on - strand at 2895.795 kb on - strand at 2895.953 kb on + strand at 2896.028 kb on + strand at 2896.060 kb on + strand at 2896.060 kb on + strand at 2896.068 kb on - strand at 2896.092 kb on - strand, within DVU2793 at 2896.103 kb on - strand, within DVU2793 at 2896.115 kb on + strand, within DVU2793 at 2896.122 kb on + strand, within DVU2793 at 2896.238 kb on - strand, within DVU2793 at 2896.262 kb on - strand, within DVU2793 at 2896.364 kb on - strand, within DVU2793 at 2896.404 kb on + strand, within DVU2793 at 2896.409 kb on + strand, within DVU2793 at 2896.425 kb on + strand, within DVU2793 at 2896.440 kb on + strand, within DVU2793 at 2896.448 kb on - strand, within DVU2793 at 2896.506 kb on - strand, within DVU2793 at 2896.558 kb on + strand, within DVU2793 at 2896.571 kb on - strand, within DVU2793 at 2896.607 kb on + strand, within DVU2793 at 2896.653 kb on - strand, within DVU2793 at 2896.682 kb on + strand, within DVU2793 at 2896.724 kb on + strand, within DVU2793 at 2896.724 kb on + strand, within DVU2793 at 2896.734 kb on + strand, within DVU2793 at 2896.742 kb on - strand, within DVU2793 at 2896.776 kb on - strand, within DVU2793 at 2896.832 kb on - strand, within DVU2793 at 2896.913 kb on - strand at 2896.913 kb on - strand at 2897.067 kb on + strand, within DVU2794 at 2897.142 kb on - strand, within DVU2794 at 2897.144 kb on + strand, within DVU2794 at 2897.234 kb on - strand, within DVU2794 at 2897.271 kb on + strand, within DVU2794 at 2897.310 kb on - strand, within DVU2794 at 2897.360 kb on + strand, within DVU2794 at 2897.360 kb on + strand, within DVU2794 at 2897.477 kb on + strand at 2897.477 kb on + strand at 2897.485 kb on - strand at 2897.489 kb on + strand at 2897.511 kb on - strand at 2897.616 kb on - strand, within nqr4 at 2897.832 kb on + strand, within nqr4 at 2897.857 kb on - strand, within nqr4
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Molybdate 100uM remove 2,895,013 - DVU2792 0.31 -2.3 2,895,029 - DVU2792 0.32 -0.3 2,895,341 + DVU2792 0.58 -2.6 2,895,377 + DVU2792 0.61 -1.6 2,895,385 - DVU2792 0.61 -1.5 2,895,438 + DVU2792 0.66 -1.8 2,895,621 + DVU2792 0.81 -1.8 2,895,648 - DVU2792 0.83 -2.2 2,895,706 + DVU2792 0.88 -1.5 2,895,721 + DVU2792 0.89 -2.1 2,895,758 - -1.6 2,895,758 - +0.4 2,895,795 - -2.1 2,895,795 - -1.8 2,895,953 + -1.1 2,896,028 + -1.2 2,896,060 + -2.4 2,896,060 + -2.0 2,896,068 - -3.1 2,896,092 - DVU2793 0.11 -2.0 2,896,103 - DVU2793 0.12 -2.0 2,896,115 + DVU2793 0.13 -2.0 2,896,122 + DVU2793 0.14 -2.2 2,896,238 - DVU2793 0.26 -1.4 2,896,262 - DVU2793 0.29 -2.4 2,896,364 - DVU2793 0.39 -1.0 2,896,404 + DVU2793 0.43 -1.5 2,896,409 + DVU2793 0.44 -2.6 2,896,425 + DVU2793 0.46 -2.1 2,896,440 + DVU2793 0.47 -2.1 2,896,448 - DVU2793 0.48 -0.3 2,896,506 - DVU2793 0.54 -2.2 2,896,558 + DVU2793 0.60 -1.9 2,896,571 - DVU2793 0.61 -2.4 2,896,607 + DVU2793 0.65 -1.6 2,896,653 - DVU2793 0.69 -0.5 2,896,682 + DVU2793 0.73 -2.2 2,896,724 + DVU2793 0.77 -3.0 2,896,724 + DVU2793 0.77 -2.1 2,896,734 + DVU2793 0.78 -3.1 2,896,742 - DVU2793 0.79 -0.1 2,896,776 - DVU2793 0.82 -4.2 2,896,832 - DVU2793 0.88 -1.9 2,896,913 - -0.2 2,896,913 - -2.2 2,897,067 + DVU2794 0.21 -1.8 2,897,142 - DVU2794 0.34 -1.7 2,897,144 + DVU2794 0.34 -1.8 2,897,234 - DVU2794 0.50 -2.4 2,897,271 + DVU2794 0.56 -0.7 2,897,310 - DVU2794 0.63 -1.6 2,897,360 + DVU2794 0.72 -2.2 2,897,360 + DVU2794 0.72 +0.1 2,897,477 + -2.0 2,897,477 + -1.8 2,897,485 - -2.1 2,897,489 + -1.1 2,897,511 - -2.6 2,897,616 - nqr4 DVU2795 0.12 +0.5 2,897,832 + nqr4 DVU2795 0.44 -0.5 2,897,857 - nqr4 DVU2795 0.48 -0.9
Or see this region's nucleotide sequence