Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.982.1 and Xcc-8004.983.1 are separated by 66 nucleotides Xcc-8004.983.1 and Xcc-8004.984.1 are separated by 59 nucleotides
Xcc-8004.982.1: Xcc-8004.982.1 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 932,254 to 933,363
Xcc-8004.982.1
Xcc-8004.983.1: Xcc-8004.983.1 - Glutathione-dependent formaldehyde-activating enzyme (EC 4.4.1.22), at 933,430 to 934,005
Xcc-8004.983.1
Xcc-8004.984.1: Xcc-8004.984.1 - S-formylglutathione hydrolase (EC 3.1.2.12), at 934,065 to 934,895
Xcc-8004.984.1
Position (kb) 933
934
935 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 932.515 kb on + strand, within Xcc-8004.982.1 at 932.515 kb on + strand, within Xcc-8004.982.1 at 932.515 kb on + strand, within Xcc-8004.982.1 at 932.515 kb on + strand, within Xcc-8004.982.1 at 932.516 kb on - strand, within Xcc-8004.982.1 at 932.516 kb on - strand, within Xcc-8004.982.1 at 932.516 kb on - strand, within Xcc-8004.982.1 at 932.633 kb on - strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.657 kb on - strand, within Xcc-8004.982.1 at 932.657 kb on - strand, within Xcc-8004.982.1 at 932.683 kb on + strand, within Xcc-8004.982.1 at 932.683 kb on + strand, within Xcc-8004.982.1 at 932.684 kb on - strand, within Xcc-8004.982.1 at 933.214 kb on - strand, within Xcc-8004.982.1 at 933.435 kb on + strand at 933.436 kb on - strand at 933.458 kb on + strand at 933.626 kb on + strand, within Xcc-8004.983.1 at 933.742 kb on + strand, within Xcc-8004.983.1 at 933.742 kb on + strand, within Xcc-8004.983.1 at 933.742 kb on + strand, within Xcc-8004.983.1 at 933.932 kb on - strand, within Xcc-8004.983.1 at 934.162 kb on - strand, within Xcc-8004.984.1 at 934.162 kb on - strand, within Xcc-8004.984.1 at 934.203 kb on + strand, within Xcc-8004.984.1 at 934.204 kb on - strand, within Xcc-8004.984.1 at 934.267 kb on - strand, within Xcc-8004.984.1 at 934.344 kb on + strand, within Xcc-8004.984.1 at 934.345 kb on - strand, within Xcc-8004.984.1 at 934.371 kb on + strand, within Xcc-8004.984.1 at 934.371 kb on + strand, within Xcc-8004.984.1 at 934.416 kb on + strand, within Xcc-8004.984.1 at 934.417 kb on - strand, within Xcc-8004.984.1 at 934.477 kb on + strand, within Xcc-8004.984.1 at 934.656 kb on + strand, within Xcc-8004.984.1 at 934.657 kb on - strand, within Xcc-8004.984.1 at 934.657 kb on - strand, within Xcc-8004.984.1 at 934.759 kb on + strand, within Xcc-8004.984.1 at 934.830 kb on + strand at 934.830 kb on + strand at 934.831 kb on - strand at 934.831 kb on - strand at 934.831 kb on - strand at 934.834 kb on - strand at 934.862 kb on + strand at 934.862 kb on + strand at 934.862 kb on + strand at 934.862 kb on + strand at 934.863 kb on - strand at 934.931 kb on - strand at 934.961 kb on + strand at 934.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days remove 932,515 + Xcc-8004.982.1 0.24 +0.6 932,515 + Xcc-8004.982.1 0.24 -0.5 932,515 + Xcc-8004.982.1 0.24 +1.2 932,515 + Xcc-8004.982.1 0.24 -2.1 932,516 - Xcc-8004.982.1 0.24 +1.8 932,516 - Xcc-8004.982.1 0.24 -1.1 932,516 - Xcc-8004.982.1 0.24 -0.8 932,633 - Xcc-8004.982.1 0.34 -0.5 932,656 + Xcc-8004.982.1 0.36 +1.0 932,656 + Xcc-8004.982.1 0.36 -1.6 932,656 + Xcc-8004.982.1 0.36 -1.1 932,656 + Xcc-8004.982.1 0.36 -0.7 932,656 + Xcc-8004.982.1 0.36 +1.8 932,656 + Xcc-8004.982.1 0.36 +2.4 932,656 + Xcc-8004.982.1 0.36 -0.6 932,656 + Xcc-8004.982.1 0.36 -1.2 932,657 - Xcc-8004.982.1 0.36 +0.9 932,657 - Xcc-8004.982.1 0.36 +1.3 932,683 + Xcc-8004.982.1 0.39 +0.8 932,683 + Xcc-8004.982.1 0.39 -1.7 932,684 - Xcc-8004.982.1 0.39 -2.0 933,214 - Xcc-8004.982.1 0.86 -0.2 933,435 + +1.6 933,436 - -0.7 933,458 + -0.2 933,626 + Xcc-8004.983.1 0.34 +0.5 933,742 + Xcc-8004.983.1 0.54 +0.5 933,742 + Xcc-8004.983.1 0.54 +2.1 933,742 + Xcc-8004.983.1 0.54 +1.0 933,932 - Xcc-8004.983.1 0.87 -1.7 934,162 - Xcc-8004.984.1 0.12 -1.8 934,162 - Xcc-8004.984.1 0.12 +0.2 934,203 + Xcc-8004.984.1 0.17 +0.2 934,204 - Xcc-8004.984.1 0.17 -1.5 934,267 - Xcc-8004.984.1 0.24 +1.4 934,344 + Xcc-8004.984.1 0.34 -1.2 934,345 - Xcc-8004.984.1 0.34 -0.1 934,371 + Xcc-8004.984.1 0.37 -2.0 934,371 + Xcc-8004.984.1 0.37 +1.3 934,416 + Xcc-8004.984.1 0.42 -0.4 934,417 - Xcc-8004.984.1 0.42 +1.7 934,477 + Xcc-8004.984.1 0.50 +0.4 934,656 + Xcc-8004.984.1 0.71 -0.2 934,657 - Xcc-8004.984.1 0.71 -0.4 934,657 - Xcc-8004.984.1 0.71 -0.7 934,759 + Xcc-8004.984.1 0.84 +0.1 934,830 + -0.8 934,830 + -0.6 934,831 - +1.7 934,831 - +0.9 934,831 - +1.1 934,834 - -0.8 934,862 + -0.3 934,862 + +1.3 934,862 + +2.8 934,862 + +0.8 934,863 - +0.2 934,931 - -0.3 934,961 + +1.2 934,962 - -3.0
Or see this region's nucleotide sequence