Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.609.1 and Xcc-8004.610.1 are separated by 13 nucleotides Xcc-8004.610.1 and Xcc-8004.611.1 are separated by 124 nucleotides
Xcc-8004.609.1: Xcc-8004.609.1 - hypothetical protein, at 561,540 to 562,610
Xcc-8004.609.1
Xcc-8004.610.1: Xcc-8004.610.1 - putative; ORF located using Glimmer/Genemark, at 562,624 to 562,989
Xcc-8004.610.1
Xcc-8004.611.1: Xcc-8004.611.1 - Type I restriction-modification system, restriction subunit R (EC 3.1.21.3), at 563,114 to 566,098
Xcc-8004.611.1
Position (kb) 562
563 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 562.003 kb on - strand, within Xcc-8004.609.1 at 562.062 kb on + strand, within Xcc-8004.609.1 at 562.063 kb on - strand, within Xcc-8004.609.1 at 562.153 kb on - strand, within Xcc-8004.609.1 at 562.569 kb on + strand at 562.569 kb on + strand at 562.569 kb on + strand at 562.612 kb on + strand at 562.612 kb on + strand at 562.612 kb on + strand at 562.612 kb on + strand at 562.616 kb on + strand at 562.616 kb on + strand at 562.617 kb on - strand at 562.617 kb on - strand at 562.617 kb on - strand at 562.617 kb on - strand at 562.636 kb on - strand at 562.705 kb on - strand, within Xcc-8004.610.1 at 562.872 kb on + strand, within Xcc-8004.610.1 at 562.872 kb on + strand, within Xcc-8004.610.1 at 562.873 kb on - strand, within Xcc-8004.610.1 at 562.898 kb on - strand, within Xcc-8004.610.1 at 562.994 kb on + strand at 563.113 kb on + strand at 563.114 kb on - strand at 563.175 kb on - strand at 563.310 kb on + strand at 563.310 kb on + strand at 563.351 kb on - strand at 563.446 kb on + strand, within Xcc-8004.611.1 at 563.468 kb on + strand, within Xcc-8004.611.1 at 563.469 kb on - strand, within Xcc-8004.611.1 at 563.469 kb on - strand, within Xcc-8004.611.1 at 563.526 kb on + strand, within Xcc-8004.611.1 at 563.527 kb on - strand, within Xcc-8004.611.1 at 563.530 kb on + strand, within Xcc-8004.611.1 at 563.530 kb on + strand, within Xcc-8004.611.1 at 563.530 kb on + strand, within Xcc-8004.611.1 at 563.530 kb on + strand, within Xcc-8004.611.1 at 563.531 kb on - strand, within Xcc-8004.611.1 at 563.531 kb on - strand, within Xcc-8004.611.1 at 563.567 kb on + strand, within Xcc-8004.611.1 at 563.568 kb on - strand, within Xcc-8004.611.1 at 563.718 kb on - strand, within Xcc-8004.611.1 at 563.724 kb on - strand, within Xcc-8004.611.1 at 563.740 kb on + strand, within Xcc-8004.611.1 at 563.806 kb on - strand, within Xcc-8004.611.1 at 563.864 kb on + strand, within Xcc-8004.611.1 at 563.924 kb on + strand, within Xcc-8004.611.1 at 563.924 kb on + strand, within Xcc-8004.611.1
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days remove 562,003 - Xcc-8004.609.1 0.43 -0.9 562,062 + Xcc-8004.609.1 0.49 -0.3 562,063 - Xcc-8004.609.1 0.49 -2.9 562,153 - Xcc-8004.609.1 0.57 +1.9 562,569 + -0.6 562,569 + +0.2 562,569 + +1.1 562,612 + -0.4 562,612 + -0.7 562,612 + -2.5 562,612 + +1.5 562,616 + -0.1 562,616 + +3.1 562,617 - -0.6 562,617 - +1.7 562,617 - +3.6 562,617 - -1.7 562,636 - +2.4 562,705 - Xcc-8004.610.1 0.22 -0.4 562,872 + Xcc-8004.610.1 0.68 +0.5 562,872 + Xcc-8004.610.1 0.68 +0.8 562,873 - Xcc-8004.610.1 0.68 +0.3 562,898 - Xcc-8004.610.1 0.75 +0.2 562,994 + -0.2 563,113 + +0.6 563,114 - -0.4 563,175 - +1.2 563,310 + -1.0 563,310 + +0.2 563,351 - -0.1 563,446 + Xcc-8004.611.1 0.11 +1.4 563,468 + Xcc-8004.611.1 0.12 -1.8 563,469 - Xcc-8004.611.1 0.12 +1.4 563,469 - Xcc-8004.611.1 0.12 +0.2 563,526 + Xcc-8004.611.1 0.14 +0.3 563,527 - Xcc-8004.611.1 0.14 +0.5 563,530 + Xcc-8004.611.1 0.14 -0.6 563,530 + Xcc-8004.611.1 0.14 -1.7 563,530 + Xcc-8004.611.1 0.14 -1.5 563,530 + Xcc-8004.611.1 0.14 +1.6 563,531 - Xcc-8004.611.1 0.14 +1.4 563,531 - Xcc-8004.611.1 0.14 -2.1 563,567 + Xcc-8004.611.1 0.15 +2.5 563,568 - Xcc-8004.611.1 0.15 -2.7 563,718 - Xcc-8004.611.1 0.20 -2.0 563,724 - Xcc-8004.611.1 0.20 -2.5 563,740 + Xcc-8004.611.1 0.21 -2.7 563,806 - Xcc-8004.611.1 0.23 -0.7 563,864 + Xcc-8004.611.1 0.25 +0.5 563,924 + Xcc-8004.611.1 0.27 -1.6 563,924 + Xcc-8004.611.1 0.27 +1.0
Or see this region's nucleotide sequence