Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.474.1 and Xcc-8004.475.1 are separated by 253 nucleotides Xcc-8004.475.1 and Xcc-8004.476.1 overlap by 4 nucleotides Xcc-8004.476.1 and Xcc-8004.477.1 overlap by 4 nucleotides
Xcc-8004.474.1: Xcc-8004.474.1 - Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82), at 436,878 to 437,954
Xcc-8004.474.1
Xcc-8004.475.1: Xcc-8004.475.1 - 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6); Glutaconate CoA-transferase subunit A (EC 2.8.3.12), at 438,208 to 439,071
Xcc-8004.475.1
Xcc-8004.476.1: Xcc-8004.476.1 - 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6); Glutaconate CoA-transferase subunit B (EC 2.8.3.12), at 439,068 to 439,856
Xcc-8004.476.1
Xcc-8004.477.1: Xcc-8004.477.1 - Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ Beta-ketoadipyl CoA thiolase (EC 2.3.1.-), at 439,853 to 441,061
Xcc-8004.477.1
Position (kb) 438
439
440 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 437.308 kb on + strand, within Xcc-8004.474.1 at 437.308 kb on + strand, within Xcc-8004.474.1 at 437.308 kb on + strand, within Xcc-8004.474.1 at 437.308 kb on + strand, within Xcc-8004.474.1 at 437.308 kb on + strand, within Xcc-8004.474.1 at 437.308 kb on + strand, within Xcc-8004.474.1 at 437.308 kb on + strand, within Xcc-8004.474.1 at 437.623 kb on + strand, within Xcc-8004.474.1 at 437.623 kb on + strand, within Xcc-8004.474.1 at 437.623 kb on + strand, within Xcc-8004.474.1 at 437.623 kb on + strand, within Xcc-8004.474.1 at 437.623 kb on + strand, within Xcc-8004.474.1 at 437.624 kb on - strand, within Xcc-8004.474.1 at 437.624 kb on - strand, within Xcc-8004.474.1 at 437.624 kb on - strand, within Xcc-8004.474.1 at 437.720 kb on - strand, within Xcc-8004.474.1 at 437.720 kb on - strand, within Xcc-8004.474.1 at 437.840 kb on - strand, within Xcc-8004.474.1 at 437.975 kb on + strand at 437.975 kb on + strand at 437.975 kb on + strand at 437.975 kb on + strand at 437.975 kb on + strand at 437.975 kb on + strand at 437.975 kb on + strand at 437.976 kb on - strand at 437.976 kb on - strand at 437.976 kb on - strand at 437.976 kb on - strand at 437.976 kb on - strand at 437.976 kb on - strand at 437.976 kb on - strand at 437.976 kb on - strand at 437.976 kb on - strand at 437.976 kb on - strand at 438.066 kb on + strand at 438.067 kb on - strand at 438.067 kb on - strand at 438.070 kb on + strand at 438.071 kb on - strand at 438.072 kb on + strand at 438.073 kb on - strand at 438.173 kb on + strand at 438.173 kb on + strand at 438.173 kb on + strand at 438.174 kb on - strand at 438.174 kb on - strand at 438.285 kb on + strand at 438.285 kb on + strand at 438.376 kb on + strand, within Xcc-8004.475.1 at 438.376 kb on + strand, within Xcc-8004.475.1 at 438.377 kb on - strand, within Xcc-8004.475.1 at 438.377 kb on - strand, within Xcc-8004.475.1 at 438.538 kb on + strand, within Xcc-8004.475.1 at 438.538 kb on + strand, within Xcc-8004.475.1 at 438.538 kb on + strand, within Xcc-8004.475.1 at 438.538 kb on + strand, within Xcc-8004.475.1 at 438.539 kb on - strand, within Xcc-8004.475.1 at 438.539 kb on - strand, within Xcc-8004.475.1 at 438.539 kb on - strand, within Xcc-8004.475.1 at 438.539 kb on - strand, within Xcc-8004.475.1 at 438.539 kb on - strand, within Xcc-8004.475.1 at 438.583 kb on + strand, within Xcc-8004.475.1 at 438.583 kb on + strand, within Xcc-8004.475.1 at 438.583 kb on + strand, within Xcc-8004.475.1 at 438.583 kb on + strand, within Xcc-8004.475.1 at 438.584 kb on - strand, within Xcc-8004.475.1 at 438.584 kb on - strand, within Xcc-8004.475.1 at 438.584 kb on - strand, within Xcc-8004.475.1 at 438.901 kb on + strand, within Xcc-8004.475.1 at 438.901 kb on + strand, within Xcc-8004.475.1 at 438.901 kb on + strand, within Xcc-8004.475.1 at 438.901 kb on + strand, within Xcc-8004.475.1 at 438.902 kb on - strand, within Xcc-8004.475.1 at 438.902 kb on - strand, within Xcc-8004.475.1 at 438.913 kb on + strand, within Xcc-8004.475.1 at 438.913 kb on + strand, within Xcc-8004.475.1 at 438.913 kb on + strand, within Xcc-8004.475.1 at 438.914 kb on - strand, within Xcc-8004.475.1 at 438.937 kb on + strand, within Xcc-8004.475.1 at 438.937 kb on + strand, within Xcc-8004.475.1 at 438.938 kb on - strand, within Xcc-8004.475.1 at 439.039 kb on + strand at 439.039 kb on + strand at 439.039 kb on + strand at 439.040 kb on - strand at 439.215 kb on + strand, within Xcc-8004.476.1 at 439.216 kb on - strand, within Xcc-8004.476.1 at 439.216 kb on - strand, within Xcc-8004.476.1 at 439.216 kb on - strand, within Xcc-8004.476.1 at 439.216 kb on - strand, within Xcc-8004.476.1 at 439.327 kb on - strand, within Xcc-8004.476.1 at 439.354 kb on + strand, within Xcc-8004.476.1 at 439.354 kb on + strand, within Xcc-8004.476.1 at 439.354 kb on + strand, within Xcc-8004.476.1 at 439.354 kb on + strand, within Xcc-8004.476.1 at 439.355 kb on - strand, within Xcc-8004.476.1 at 439.355 kb on - strand, within Xcc-8004.476.1 at 439.355 kb on - strand, within Xcc-8004.476.1 at 439.355 kb on - strand, within Xcc-8004.476.1 at 439.355 kb on - strand, within Xcc-8004.476.1 at 439.355 kb on - strand, within Xcc-8004.476.1 at 439.630 kb on + strand, within Xcc-8004.476.1 at 439.630 kb on + strand, within Xcc-8004.476.1 at 439.630 kb on + strand, within Xcc-8004.476.1 at 439.630 kb on + strand, within Xcc-8004.476.1 at 439.630 kb on + strand, within Xcc-8004.476.1 at 439.630 kb on + strand, within Xcc-8004.476.1 at 439.630 kb on + strand, within Xcc-8004.476.1 at 439.631 kb on - strand, within Xcc-8004.476.1 at 439.631 kb on - strand, within Xcc-8004.476.1 at 439.631 kb on - strand, within Xcc-8004.476.1 at 439.631 kb on - strand, within Xcc-8004.476.1 at 439.865 kb on + strand at 439.866 kb on - strand at 439.866 kb on - strand at 440.009 kb on + strand, within Xcc-8004.477.1 at 440.009 kb on + strand, within Xcc-8004.477.1 at 440.009 kb on + strand, within Xcc-8004.477.1 at 440.010 kb on - strand, within Xcc-8004.477.1 at 440.010 kb on - strand, within Xcc-8004.477.1
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days remove 437,308 + Xcc-8004.474.1 0.40 -0.5 437,308 + Xcc-8004.474.1 0.40 +4.0 437,308 + Xcc-8004.474.1 0.40 -1.2 437,308 + Xcc-8004.474.1 0.40 +2.6 437,308 + Xcc-8004.474.1 0.40 +2.7 437,308 + Xcc-8004.474.1 0.40 -1.4 437,308 + Xcc-8004.474.1 0.40 +1.9 437,623 + Xcc-8004.474.1 0.69 -2.3 437,623 + Xcc-8004.474.1 0.69 -3.0 437,623 + Xcc-8004.474.1 0.69 +0.6 437,623 + Xcc-8004.474.1 0.69 -0.7 437,623 + Xcc-8004.474.1 0.69 +3.6 437,624 - Xcc-8004.474.1 0.69 +0.9 437,624 - Xcc-8004.474.1 0.69 -0.6 437,624 - Xcc-8004.474.1 0.69 -0.4 437,720 - Xcc-8004.474.1 0.78 -2.7 437,720 - Xcc-8004.474.1 0.78 -1.2 437,840 - Xcc-8004.474.1 0.89 +2.0 437,975 + +1.7 437,975 + -1.5 437,975 + -1.7 437,975 + +1.8 437,975 + +0.0 437,975 + -0.9 437,975 + +1.0 437,976 - +1.0 437,976 - -0.4 437,976 - -1.2 437,976 - +1.2 437,976 - +0.6 437,976 - +1.3 437,976 - +2.2 437,976 - -0.4 437,976 - +2.5 437,976 - +1.7 438,066 + +0.5 438,067 - -2.7 438,067 - -0.1 438,070 + -0.5 438,071 - +1.2 438,072 + +0.5 438,073 - +1.4 438,173 + +1.3 438,173 + +0.0 438,173 + +0.3 438,174 - +2.7 438,174 - +0.7 438,285 + -1.4 438,285 + +1.1 438,376 + Xcc-8004.475.1 0.19 -0.7 438,376 + Xcc-8004.475.1 0.19 +0.5 438,377 - Xcc-8004.475.1 0.20 +1.3 438,377 - Xcc-8004.475.1 0.20 -3.2 438,538 + Xcc-8004.475.1 0.38 -0.8 438,538 + Xcc-8004.475.1 0.38 +1.4 438,538 + Xcc-8004.475.1 0.38 +0.2 438,538 + Xcc-8004.475.1 0.38 -1.1 438,539 - Xcc-8004.475.1 0.38 +1.1 438,539 - Xcc-8004.475.1 0.38 +0.4 438,539 - Xcc-8004.475.1 0.38 -1.9 438,539 - Xcc-8004.475.1 0.38 -0.1 438,539 - Xcc-8004.475.1 0.38 -1.5 438,583 + Xcc-8004.475.1 0.43 -1.2 438,583 + Xcc-8004.475.1 0.43 -0.1 438,583 + Xcc-8004.475.1 0.43 -3.2 438,583 + Xcc-8004.475.1 0.43 -1.3 438,584 - Xcc-8004.475.1 0.44 +1.8 438,584 - Xcc-8004.475.1 0.44 -1.5 438,584 - Xcc-8004.475.1 0.44 +2.8 438,901 + Xcc-8004.475.1 0.80 +4.1 438,901 + Xcc-8004.475.1 0.80 +1.8 438,901 + Xcc-8004.475.1 0.80 -2.5 438,901 + Xcc-8004.475.1 0.80 -1.1 438,902 - Xcc-8004.475.1 0.80 +0.3 438,902 - Xcc-8004.475.1 0.80 +0.8 438,913 + Xcc-8004.475.1 0.82 -0.7 438,913 + Xcc-8004.475.1 0.82 +0.5 438,913 + Xcc-8004.475.1 0.82 -1.1 438,914 - Xcc-8004.475.1 0.82 -0.8 438,937 + Xcc-8004.475.1 0.84 +0.9 438,937 + Xcc-8004.475.1 0.84 +2.3 438,938 - Xcc-8004.475.1 0.84 +1.4 439,039 + -0.8 439,039 + -0.7 439,039 + -0.6 439,040 - -0.5 439,215 + Xcc-8004.476.1 0.19 +1.6 439,216 - Xcc-8004.476.1 0.19 +1.4 439,216 - Xcc-8004.476.1 0.19 +0.6 439,216 - Xcc-8004.476.1 0.19 +3.6 439,216 - Xcc-8004.476.1 0.19 -0.3 439,327 - Xcc-8004.476.1 0.33 +1.2 439,354 + Xcc-8004.476.1 0.36 +2.6 439,354 + Xcc-8004.476.1 0.36 +2.4 439,354 + Xcc-8004.476.1 0.36 -2.1 439,354 + Xcc-8004.476.1 0.36 +2.9 439,355 - Xcc-8004.476.1 0.36 +1.3 439,355 - Xcc-8004.476.1 0.36 +0.4 439,355 - Xcc-8004.476.1 0.36 +1.4 439,355 - Xcc-8004.476.1 0.36 +0.0 439,355 - Xcc-8004.476.1 0.36 -0.2 439,355 - Xcc-8004.476.1 0.36 -1.3 439,630 + Xcc-8004.476.1 0.71 -2.0 439,630 + Xcc-8004.476.1 0.71 -1.3 439,630 + Xcc-8004.476.1 0.71 +0.7 439,630 + Xcc-8004.476.1 0.71 -1.0 439,630 + Xcc-8004.476.1 0.71 -0.3 439,630 + Xcc-8004.476.1 0.71 +0.9 439,630 + Xcc-8004.476.1 0.71 +1.7 439,631 - Xcc-8004.476.1 0.71 +0.9 439,631 - Xcc-8004.476.1 0.71 +1.9 439,631 - Xcc-8004.476.1 0.71 -1.6 439,631 - Xcc-8004.476.1 0.71 -0.2 439,865 + -1.6 439,866 - -1.1 439,866 - +1.7 440,009 + Xcc-8004.477.1 0.13 -1.6 440,009 + Xcc-8004.477.1 0.13 -0.9 440,009 + Xcc-8004.477.1 0.13 +3.1 440,010 - Xcc-8004.477.1 0.13 +0.3 440,010 - Xcc-8004.477.1 0.13 -0.2
Or see this region's nucleotide sequence