Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3752.1 and Xcc-8004.3753.1 are separated by 26 nucleotides Xcc-8004.3753.1 and Xcc-8004.3754.1 overlap by 8 nucleotides Xcc-8004.3754.1 and Xcc-8004.3755.1 overlap by 32 nucleotides
Xcc-8004.3752.1: Xcc-8004.3752.1 - Isopenicillin N epimerase (EC 5.1.1.17), at 3,623,968 to 3,625,224
Xcc-8004.3752.1
Xcc-8004.3753.1: Xcc-8004.3753.1 - putative secreted protein, at 3,625,251 to 3,626,855
Xcc-8004.3753.1
Xcc-8004.3754.1: Xcc-8004.3754.1 - Tryptophan 2,3-dioxygenase (EC 1.13.11.11), at 3,626,848 to 3,627,660
Xcc-8004.3754.1
Xcc-8004.3755.1: Xcc-8004.3755.1 - Tryptophan 2,3-dioxygenase (EC 1.13.11.11), at 3,627,629 to 3,627,952
Xcc-8004.3755.1
Position (kb) 3625
3626
3627 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3624.878 kb on + strand, within Xcc-8004.3752.1 at 3624.919 kb on + strand, within Xcc-8004.3752.1 at 3625.093 kb on - strand, within Xcc-8004.3752.1 at 3625.709 kb on - strand, within Xcc-8004.3753.1 at 3625.872 kb on + strand, within Xcc-8004.3753.1 at 3625.873 kb on - strand, within Xcc-8004.3753.1 at 3626.005 kb on - strand, within Xcc-8004.3753.1 at 3626.291 kb on + strand, within Xcc-8004.3753.1 at 3626.322 kb on + strand, within Xcc-8004.3753.1 at 3626.322 kb on + strand, within Xcc-8004.3753.1 at 3626.323 kb on - strand, within Xcc-8004.3753.1 at 3626.709 kb on + strand at 3627.138 kb on - strand, within Xcc-8004.3754.1 at 3627.148 kb on - strand, within Xcc-8004.3754.1 at 3627.547 kb on - strand, within Xcc-8004.3754.1 at 3627.719 kb on + strand, within Xcc-8004.3755.1 at 3627.775 kb on + strand, within Xcc-8004.3755.1 at 3627.819 kb on - strand, within Xcc-8004.3755.1 at 3627.819 kb on - strand, within Xcc-8004.3755.1 at 3627.819 kb on - strand, within Xcc-8004.3755.1 at 3627.825 kb on + strand, within Xcc-8004.3755.1
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days remove 3,624,878 + Xcc-8004.3752.1 0.72 -1.1 3,624,919 + Xcc-8004.3752.1 0.76 -2.6 3,625,093 - Xcc-8004.3752.1 0.89 +0.4 3,625,709 - Xcc-8004.3753.1 0.29 -1.2 3,625,872 + Xcc-8004.3753.1 0.39 +0.0 3,625,873 - Xcc-8004.3753.1 0.39 +0.8 3,626,005 - Xcc-8004.3753.1 0.47 +0.5 3,626,291 + Xcc-8004.3753.1 0.65 -0.3 3,626,322 + Xcc-8004.3753.1 0.67 -0.2 3,626,322 + Xcc-8004.3753.1 0.67 +4.6 3,626,323 - Xcc-8004.3753.1 0.67 -2.0 3,626,709 + +1.4 3,627,138 - Xcc-8004.3754.1 0.36 +0.0 3,627,148 - Xcc-8004.3754.1 0.37 -0.2 3,627,547 - Xcc-8004.3754.1 0.86 -0.1 3,627,719 + Xcc-8004.3755.1 0.28 -1.2 3,627,775 + Xcc-8004.3755.1 0.45 -0.3 3,627,819 - Xcc-8004.3755.1 0.59 -0.6 3,627,819 - Xcc-8004.3755.1 0.59 -2.9 3,627,819 - Xcc-8004.3755.1 0.59 +1.2 3,627,825 + Xcc-8004.3755.1 0.60 +0.6
Or see this region's nucleotide sequence