Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3558.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.3557.1 and Xcc-8004.3558.1 are separated by 236 nucleotidesXcc-8004.3558.1 and Xcc-8004.3559.1 are separated by 2 nucleotidesXcc-8004.3559.1 and Xcc-8004.3560.1 overlap by 4 nucleotides Xcc-8004.3557.1: Xcc-8004.3557.1 - Uridine monophosphate kinase (EC 2.7.4.22), at 3,447,619 to 3,448,341 Xcc-8004.3557.1 Xcc-8004.3558.1: Xcc-8004.3558.1 - Ribosome recycling factor, at 3,448,578 to 3,449,135 Xcc-8004.3558.1 Xcc-8004.3559.1: Xcc-8004.3559.1 - Undecaprenyl diphosphate synthase (EC 2.5.1.31), at 3,449,138 to 3,449,914 Xcc-8004.3559.1 Xcc-8004.3560.1: Xcc-8004.3560.1 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 3,449,911 to 3,450,738 Xcc-8004.3560.1 Position (kb) 3448 3449 3450Strain fitness (log2 ratio) -2 -1 0 1 2at 3448.325 kb on + strandat 3448.540 kb on + strandat 3448.540 kb on + strandat 3448.540 kb on + strandat 3448.540 kb on + strandat 3448.540 kb on + strandat 3448.540 kb on + strandat 3448.541 kb on - strandat 3448.541 kb on - strandat 3448.541 kb on - strandat 3448.542 kb on + strandat 3448.542 kb on + strandat 3448.542 kb on + strandat 3448.554 kb on + strandat 3448.554 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
remove
3,448,325 + -1.1
3,448,540 + -0.2
3,448,540 + -0.9
3,448,540 + -0.3
3,448,540 + +1.1
3,448,540 + +0.2
3,448,540 + +1.6
3,448,541 - +0.9
3,448,541 - +1.0
3,448,541 - +2.3
3,448,542 + +0.1
3,448,542 + -1.9
3,448,542 + -1.3
3,448,554 + -1.6
3,448,554 + -1.0

Or see this region's nucleotide sequence