Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3214.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3213.1 and Xcc-8004.3214.1 are separated by 67 nucleotidesXcc-8004.3214.1 and Xcc-8004.3215.1 overlap by 4 nucleotides Xcc-8004.3213.1: Xcc-8004.3213.1 - Mobile element protein, at 3,124,218 to 3,125,432 Xcc-8004.3213.1 Xcc-8004.3214.1: Xcc-8004.3214.1 - hypothetical protein, at 3,125,500 to 3,125,913 Xcc-8004.3214.1 Xcc-8004.3215.1: Xcc-8004.3215.1 - RhsD protein, at 3,125,910 to 3,130,307 Xcc-8004.3215.1 Position (kb) 3125 3126Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3125.573 kb on + strand, within Xcc-8004.3214.1at 3125.573 kb on + strand, within Xcc-8004.3214.1at 3125.574 kb on - strand, within Xcc-8004.3214.1at 3125.616 kb on + strand, within Xcc-8004.3214.1at 3125.616 kb on + strand, within Xcc-8004.3214.1at 3125.616 kb on + strand, within Xcc-8004.3214.1at 3125.617 kb on - strand, within Xcc-8004.3214.1at 3125.676 kb on + strand, within Xcc-8004.3214.1at 3125.676 kb on + strand, within Xcc-8004.3214.1at 3125.677 kb on - strand, within Xcc-8004.3214.1at 3125.706 kb on - strand, within Xcc-8004.3214.1at 3125.733 kb on - strand, within Xcc-8004.3214.1at 3125.753 kb on + strand, within Xcc-8004.3214.1at 3125.754 kb on - strand, within Xcc-8004.3214.1at 3125.756 kb on + strand, within Xcc-8004.3214.1at 3125.757 kb on - strand, within Xcc-8004.3214.1at 3125.757 kb on - strand, within Xcc-8004.3214.1at 3125.773 kb on - strand, within Xcc-8004.3214.1at 3125.788 kb on + strand, within Xcc-8004.3214.1at 3125.789 kb on - strand, within Xcc-8004.3214.1at 3125.795 kb on - strand, within Xcc-8004.3214.1at 3125.826 kb on + strand, within Xcc-8004.3214.1at 3125.846 kb on + strand, within Xcc-8004.3214.1at 3125.846 kb on + strand, within Xcc-8004.3214.1at 3125.846 kb on + strand, within Xcc-8004.3214.1at 3125.847 kb on - strand, within Xcc-8004.3214.1at 3125.847 kb on - strand, within Xcc-8004.3214.1at 3125.934 kb on + strandat 3125.935 kb on - strandat 3126.019 kb on + strandat 3126.019 kb on + strandat 3126.040 kb on + strandat 3126.040 kb on + strandat 3126.113 kb on - strandat 3126.113 kb on - strandat 3126.124 kb on + strandat 3126.275 kb on + strandat 3126.328 kb on + strandat 3126.329 kb on - strandat 3126.329 kb on - strandat 3126.410 kb on + strand, within Xcc-8004.3215.1at 3126.411 kb on - strand, within Xcc-8004.3215.1at 3126.415 kb on + strand, within Xcc-8004.3215.1at 3126.416 kb on - strand, within Xcc-8004.3215.1at 3126.445 kb on + strand, within Xcc-8004.3215.1at 3126.454 kb on + strand, within Xcc-8004.3215.1at 3126.454 kb on + strand, within Xcc-8004.3215.1at 3126.454 kb on + strand, within Xcc-8004.3215.1at 3126.461 kb on + strand, within Xcc-8004.3215.1at 3126.461 kb on + strand, within Xcc-8004.3215.1at 3126.461 kb on + strand, within Xcc-8004.3215.1at 3126.505 kb on + strand, within Xcc-8004.3215.1at 3126.505 kb on + strand, within Xcc-8004.3215.1at 3126.505 kb on + strand, within Xcc-8004.3215.1at 3126.506 kb on - strand, within Xcc-8004.3215.1at 3126.511 kb on + strand, within Xcc-8004.3215.1at 3126.605 kb on + strand, within Xcc-8004.3215.1at 3126.606 kb on - strand, within Xcc-8004.3215.1at 3126.622 kb on + strand, within Xcc-8004.3215.1at 3126.622 kb on + strand, within Xcc-8004.3215.1at 3126.623 kb on - strand, within Xcc-8004.3215.1at 3126.673 kb on + strand, within Xcc-8004.3215.1at 3126.679 kb on + strand, within Xcc-8004.3215.1at 3126.679 kb on + strand, within Xcc-8004.3215.1at 3126.679 kb on + strand, within Xcc-8004.3215.1at 3126.679 kb on + strand, within Xcc-8004.3215.1at 3126.679 kb on + strand, within Xcc-8004.3215.1at 3126.680 kb on - strand, within Xcc-8004.3215.1at 3126.680 kb on - strand, within Xcc-8004.3215.1at 3126.680 kb on - strand, within Xcc-8004.3215.1at 3126.680 kb on - strand, within Xcc-8004.3215.1at 3126.680 kb on - strand, within Xcc-8004.3215.1at 3126.680 kb on - strand, within Xcc-8004.3215.1at 3126.680 kb on - strand, within Xcc-8004.3215.1at 3126.737 kb on + strand, within Xcc-8004.3215.1at 3126.737 kb on + strand, within Xcc-8004.3215.1at 3126.737 kb on + strand, within Xcc-8004.3215.1at 3126.737 kb on + strand, within Xcc-8004.3215.1at 3126.737 kb on + strand, within Xcc-8004.3215.1at 3126.737 kb on + strand, within Xcc-8004.3215.1at 3126.737 kb on + strand, within Xcc-8004.3215.1at 3126.737 kb on + strand, within Xcc-8004.3215.1at 3126.738 kb on - strand, within Xcc-8004.3215.1at 3126.738 kb on - strand, within Xcc-8004.3215.1at 3126.738 kb on - strand, within Xcc-8004.3215.1at 3126.738 kb on - strand, within Xcc-8004.3215.1at 3126.738 kb on - strand, within Xcc-8004.3215.1at 3126.738 kb on - strand, within Xcc-8004.3215.1at 3126.738 kb on - strand, within Xcc-8004.3215.1at 3126.740 kb on - strand, within Xcc-8004.3215.1at 3126.740 kb on - strand, within Xcc-8004.3215.1at 3126.803 kb on - strand, within Xcc-8004.3215.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
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3,125,573 + Xcc-8004.3214.1 0.18 +1.0
3,125,573 + Xcc-8004.3214.1 0.18 -3.0
3,125,574 - Xcc-8004.3214.1 0.18 -0.6
3,125,616 + Xcc-8004.3214.1 0.28 +2.6
3,125,616 + Xcc-8004.3214.1 0.28 +0.4
3,125,616 + Xcc-8004.3214.1 0.28 +0.1
3,125,617 - Xcc-8004.3214.1 0.28 -2.4
3,125,676 + Xcc-8004.3214.1 0.43 +0.2
3,125,676 + Xcc-8004.3214.1 0.43 +1.9
3,125,677 - Xcc-8004.3214.1 0.43 -1.3
3,125,706 - Xcc-8004.3214.1 0.50 -2.6
3,125,733 - Xcc-8004.3214.1 0.56 +1.3
3,125,753 + Xcc-8004.3214.1 0.61 +2.7
3,125,754 - Xcc-8004.3214.1 0.61 -2.2
3,125,756 + Xcc-8004.3214.1 0.62 -0.9
3,125,757 - Xcc-8004.3214.1 0.62 -1.5
3,125,757 - Xcc-8004.3214.1 0.62 +2.1
3,125,773 - Xcc-8004.3214.1 0.66 +0.0
3,125,788 + Xcc-8004.3214.1 0.70 +0.4
3,125,789 - Xcc-8004.3214.1 0.70 +0.5
3,125,795 - Xcc-8004.3214.1 0.71 -1.6
3,125,826 + Xcc-8004.3214.1 0.79 +0.4
3,125,846 + Xcc-8004.3214.1 0.84 +1.4
3,125,846 + Xcc-8004.3214.1 0.84 +0.1
3,125,846 + Xcc-8004.3214.1 0.84 +2.0
3,125,847 - Xcc-8004.3214.1 0.84 +2.2
3,125,847 - Xcc-8004.3214.1 0.84 +2.8
3,125,934 + -3.0
3,125,935 - +0.1
3,126,019 + -0.1
3,126,019 + -1.6
3,126,040 + +1.3
3,126,040 + +0.2
3,126,113 - -2.2
3,126,113 - -1.9
3,126,124 + -0.5
3,126,275 + +1.8
3,126,328 + -1.4
3,126,329 - -1.2
3,126,329 - -0.2
3,126,410 + Xcc-8004.3215.1 0.11 +0.8
3,126,411 - Xcc-8004.3215.1 0.11 -0.6
3,126,415 + Xcc-8004.3215.1 0.11 +0.4
3,126,416 - Xcc-8004.3215.1 0.12 -3.1
3,126,445 + Xcc-8004.3215.1 0.12 -0.2
3,126,454 + Xcc-8004.3215.1 0.12 -0.4
3,126,454 + Xcc-8004.3215.1 0.12 -0.8
3,126,454 + Xcc-8004.3215.1 0.12 -1.2
3,126,461 + Xcc-8004.3215.1 0.13 -2.1
3,126,461 + Xcc-8004.3215.1 0.13 -1.5
3,126,461 + Xcc-8004.3215.1 0.13 -1.3
3,126,505 + Xcc-8004.3215.1 0.14 -1.6
3,126,505 + Xcc-8004.3215.1 0.14 +1.2
3,126,505 + Xcc-8004.3215.1 0.14 +0.2
3,126,506 - Xcc-8004.3215.1 0.14 +1.2
3,126,511 + Xcc-8004.3215.1 0.14 +1.9
3,126,605 + Xcc-8004.3215.1 0.16 +2.4
3,126,606 - Xcc-8004.3215.1 0.16 -3.2
3,126,622 + Xcc-8004.3215.1 0.16 -1.5
3,126,622 + Xcc-8004.3215.1 0.16 -0.5
3,126,623 - Xcc-8004.3215.1 0.16 -0.9
3,126,673 + Xcc-8004.3215.1 0.17 +0.3
3,126,679 + Xcc-8004.3215.1 0.17 -2.4
3,126,679 + Xcc-8004.3215.1 0.17 -1.7
3,126,679 + Xcc-8004.3215.1 0.17 +0.1
3,126,679 + Xcc-8004.3215.1 0.17 +0.3
3,126,679 + Xcc-8004.3215.1 0.17 -0.8
3,126,680 - Xcc-8004.3215.1 0.18 +1.0
3,126,680 - Xcc-8004.3215.1 0.18 -0.2
3,126,680 - Xcc-8004.3215.1 0.18 -1.3
3,126,680 - Xcc-8004.3215.1 0.18 +1.2
3,126,680 - Xcc-8004.3215.1 0.18 -1.7
3,126,680 - Xcc-8004.3215.1 0.18 +2.6
3,126,680 - Xcc-8004.3215.1 0.18 +0.3
3,126,737 + Xcc-8004.3215.1 0.19 +0.2
3,126,737 + Xcc-8004.3215.1 0.19 -0.9
3,126,737 + Xcc-8004.3215.1 0.19 -0.7
3,126,737 + Xcc-8004.3215.1 0.19 +0.4
3,126,737 + Xcc-8004.3215.1 0.19 +1.5
3,126,737 + Xcc-8004.3215.1 0.19 -0.2
3,126,737 + Xcc-8004.3215.1 0.19 -2.8
3,126,737 + Xcc-8004.3215.1 0.19 -0.4
3,126,738 - Xcc-8004.3215.1 0.19 +2.1
3,126,738 - Xcc-8004.3215.1 0.19 +1.9
3,126,738 - Xcc-8004.3215.1 0.19 +1.2
3,126,738 - Xcc-8004.3215.1 0.19 -0.4
3,126,738 - Xcc-8004.3215.1 0.19 -1.6
3,126,738 - Xcc-8004.3215.1 0.19 +1.6
3,126,738 - Xcc-8004.3215.1 0.19 +0.1
3,126,740 - Xcc-8004.3215.1 0.19 +1.4
3,126,740 - Xcc-8004.3215.1 0.19 -1.2
3,126,803 - Xcc-8004.3215.1 0.20 -0.4

Or see this region's nucleotide sequence