Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3190.1 and Xcc-8004.3191.1 overlap by 4 nucleotides Xcc-8004.3191.1 and Xcc-8004.3192.1 overlap by 4 nucleotides Xcc-8004.3192.1 and Xcc-8004.3193.1 overlap by 1 nucleotides Xcc-8004.3193.1 and Xcc-8004.3194.1 are separated by 37 nucleotides
Xcc-8004.3190.1: Xcc-8004.3190.1 - Cytochrome c heme lyase subunit CcmF, at 3,104,368 to 3,106,365
Xcc-8004.3190.1
Xcc-8004.3191.1: Xcc-8004.3191.1 - Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase, at 3,106,362 to 3,106,904
Xcc-8004.3191.1
Xcc-8004.3192.1: Xcc-8004.3192.1 - Cytochrome c heme lyase subunit CcmL, at 3,106,901 to 3,107,353
Xcc-8004.3192.1
Xcc-8004.3193.1: Xcc-8004.3193.1 - C-type cytochrome biogenesis protein, at 3,107,353 to 3,108,078
Xcc-8004.3193.1
Xcc-8004.3194.1: Xcc-8004.3194.1 - Histidine kinase/response regulator hybrid protein, at 3,108,116 to 3,110,188
Xcc-8004.3194.1
Position (kb) 3106
3107
3108 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3106.066 kb on + strand, within Xcc-8004.3190.1 at 3106.066 kb on + strand, within Xcc-8004.3190.1 at 3106.067 kb on - strand, within Xcc-8004.3190.1 at 3106.126 kb on + strand, within Xcc-8004.3190.1 at 3106.126 kb on + strand, within Xcc-8004.3190.1 at 3106.126 kb on + strand, within Xcc-8004.3190.1 at 3106.127 kb on - strand, within Xcc-8004.3190.1 at 3106.190 kb on - strand at 3106.192 kb on + strand at 3106.193 kb on - strand at 3106.425 kb on + strand, within Xcc-8004.3191.1 at 3106.426 kb on - strand, within Xcc-8004.3191.1 at 3106.426 kb on - strand, within Xcc-8004.3191.1 at 3106.557 kb on + strand, within Xcc-8004.3191.1 at 3106.557 kb on + strand, within Xcc-8004.3191.1 at 3106.657 kb on - strand, within Xcc-8004.3191.1 at 3106.662 kb on + strand, within Xcc-8004.3191.1 at 3106.662 kb on + strand, within Xcc-8004.3191.1 at 3106.662 kb on + strand, within Xcc-8004.3191.1 at 3106.663 kb on - strand, within Xcc-8004.3191.1 at 3106.663 kb on - strand, within Xcc-8004.3191.1 at 3106.663 kb on - strand, within Xcc-8004.3191.1 at 3106.716 kb on + strand, within Xcc-8004.3191.1 at 3106.717 kb on - strand, within Xcc-8004.3191.1 at 3106.717 kb on - strand, within Xcc-8004.3191.1 at 3106.717 kb on - strand, within Xcc-8004.3191.1 at 3106.770 kb on + strand, within Xcc-8004.3191.1 at 3106.770 kb on + strand, within Xcc-8004.3191.1 at 3106.770 kb on + strand, within Xcc-8004.3191.1 at 3106.771 kb on - strand, within Xcc-8004.3191.1 at 3106.771 kb on - strand, within Xcc-8004.3191.1 at 3106.818 kb on + strand, within Xcc-8004.3191.1 at 3106.818 kb on + strand, within Xcc-8004.3191.1 at 3107.171 kb on + strand, within Xcc-8004.3192.1 at 3107.171 kb on + strand, within Xcc-8004.3192.1 at 3107.171 kb on + strand, within Xcc-8004.3192.1 at 3107.171 kb on + strand, within Xcc-8004.3192.1 at 3107.172 kb on - strand, within Xcc-8004.3192.1 at 3107.172 kb on - strand, within Xcc-8004.3192.1 at 3107.172 kb on - strand, within Xcc-8004.3192.1 at 3107.172 kb on - strand, within Xcc-8004.3192.1 at 3107.172 kb on - strand, within Xcc-8004.3192.1 at 3107.172 kb on - strand, within Xcc-8004.3192.1 at 3107.205 kb on - strand, within Xcc-8004.3192.1 at 3107.205 kb on - strand, within Xcc-8004.3192.1 at 3107.365 kb on + strand at 3107.365 kb on + strand at 3107.365 kb on + strand at 3107.366 kb on - strand at 3107.624 kb on + strand, within Xcc-8004.3193.1 at 3107.624 kb on + strand, within Xcc-8004.3193.1 at 3107.625 kb on - strand, within Xcc-8004.3193.1 at 3107.744 kb on - strand, within Xcc-8004.3193.1 at 3107.744 kb on - strand, within Xcc-8004.3193.1 at 3107.744 kb on - strand, within Xcc-8004.3193.1 at 3107.939 kb on - strand, within Xcc-8004.3193.1 at 3108.169 kb on + strand at 3108.169 kb on + strand at 3108.169 kb on + strand at 3108.170 kb on - strand at 3108.170 kb on - strand at 3108.170 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days remove 3,106,066 + Xcc-8004.3190.1 0.85 -1.1 3,106,066 + Xcc-8004.3190.1 0.85 +1.4 3,106,067 - Xcc-8004.3190.1 0.85 +0.9 3,106,126 + Xcc-8004.3190.1 0.88 -1.6 3,106,126 + Xcc-8004.3190.1 0.88 -0.4 3,106,126 + Xcc-8004.3190.1 0.88 +0.0 3,106,127 - Xcc-8004.3190.1 0.88 -1.3 3,106,190 - -2.3 3,106,192 + +0.6 3,106,193 - -1.1 3,106,425 + Xcc-8004.3191.1 0.12 -2.9 3,106,426 - Xcc-8004.3191.1 0.12 +1.8 3,106,426 - Xcc-8004.3191.1 0.12 -1.4 3,106,557 + Xcc-8004.3191.1 0.36 -2.9 3,106,557 + Xcc-8004.3191.1 0.36 -0.5 3,106,657 - Xcc-8004.3191.1 0.54 -0.0 3,106,662 + Xcc-8004.3191.1 0.55 -0.7 3,106,662 + Xcc-8004.3191.1 0.55 -1.4 3,106,662 + Xcc-8004.3191.1 0.55 +1.9 3,106,663 - Xcc-8004.3191.1 0.55 -1.2 3,106,663 - Xcc-8004.3191.1 0.55 +1.3 3,106,663 - Xcc-8004.3191.1 0.55 -0.6 3,106,716 + Xcc-8004.3191.1 0.65 -1.7 3,106,717 - Xcc-8004.3191.1 0.65 -2.3 3,106,717 - Xcc-8004.3191.1 0.65 +3.4 3,106,717 - Xcc-8004.3191.1 0.65 +1.4 3,106,770 + Xcc-8004.3191.1 0.75 +1.4 3,106,770 + Xcc-8004.3191.1 0.75 +0.4 3,106,770 + Xcc-8004.3191.1 0.75 +1.1 3,106,771 - Xcc-8004.3191.1 0.75 +0.4 3,106,771 - Xcc-8004.3191.1 0.75 -1.4 3,106,818 + Xcc-8004.3191.1 0.84 +1.5 3,106,818 + Xcc-8004.3191.1 0.84 +2.0 3,107,171 + Xcc-8004.3192.1 0.60 +1.4 3,107,171 + Xcc-8004.3192.1 0.60 -3.2 3,107,171 + Xcc-8004.3192.1 0.60 -1.8 3,107,171 + Xcc-8004.3192.1 0.60 -1.2 3,107,172 - Xcc-8004.3192.1 0.60 +1.4 3,107,172 - Xcc-8004.3192.1 0.60 -0.9 3,107,172 - Xcc-8004.3192.1 0.60 +0.4 3,107,172 - Xcc-8004.3192.1 0.60 -2.0 3,107,172 - Xcc-8004.3192.1 0.60 +0.3 3,107,172 - Xcc-8004.3192.1 0.60 -0.2 3,107,205 - Xcc-8004.3192.1 0.67 -0.2 3,107,205 - Xcc-8004.3192.1 0.67 +1.8 3,107,365 + -1.7 3,107,365 + -2.5 3,107,365 + -0.8 3,107,366 - +0.2 3,107,624 + Xcc-8004.3193.1 0.37 -0.1 3,107,624 + Xcc-8004.3193.1 0.37 -0.2 3,107,625 - Xcc-8004.3193.1 0.37 +0.8 3,107,744 - Xcc-8004.3193.1 0.54 +0.4 3,107,744 - Xcc-8004.3193.1 0.54 -1.7 3,107,744 - Xcc-8004.3193.1 0.54 -1.4 3,107,939 - Xcc-8004.3193.1 0.81 -1.6 3,108,169 + +0.6 3,108,169 + +1.0 3,108,169 + +0.4 3,108,170 - -0.8 3,108,170 - +0.9 3,108,170 - -1.1
Or see this region's nucleotide sequence