Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2165.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
2,094,865	+		Xcc-8004.2164.1	0.31	+1.2
2,094,865	+		Xcc-8004.2164.1	0.31	+1.5
2,094,865	+		Xcc-8004.2164.1	0.31	-1.2
2,094,865	+		Xcc-8004.2164.1	0.31	+2.6
2,094,865	+		Xcc-8004.2164.1	0.31	+0.4
2,094,865	+		Xcc-8004.2164.1	0.31	+0.3
2,094,865	+		Xcc-8004.2164.1	0.31	-1.6
2,094,865	+		Xcc-8004.2164.1	0.31	-0.2
2,094,865	+		Xcc-8004.2164.1	0.31	+1.5
2,094,865	+		Xcc-8004.2164.1	0.31	-1.0
2,094,865	+		Xcc-8004.2164.1	0.31	-1.5
2,094,866	-		Xcc-8004.2164.1	0.31	+0.1
2,094,866	-		Xcc-8004.2164.1	0.31	+0.6
2,094,866	-		Xcc-8004.2164.1	0.31	-1.4
2,094,866	-		Xcc-8004.2164.1	0.31	+2.8
2,094,866	-		Xcc-8004.2164.1	0.31	+1.3
2,094,866	-		Xcc-8004.2164.1	0.31	-0.9
2,094,866	-		Xcc-8004.2164.1	0.31	-0.0
2,094,877	+		Xcc-8004.2164.1	0.33	-1.7
2,094,878	-		Xcc-8004.2164.1	0.33	-1.8
2,094,889	+		Xcc-8004.2164.1	0.35	+2.0
2,094,889	+		Xcc-8004.2164.1	0.35	-0.3
2,094,889	+		Xcc-8004.2164.1	0.35	+0.1
2,094,890	-		Xcc-8004.2164.1	0.35	-2.5
2,094,904	+		Xcc-8004.2164.1	0.37	+1.6
2,094,904	+		Xcc-8004.2164.1	0.37	-0.5
2,094,904	+		Xcc-8004.2164.1	0.37	+0.8
2,094,904	+		Xcc-8004.2164.1	0.37	+1.4
2,094,905	-		Xcc-8004.2164.1	0.37	+2.9
2,094,906	+		Xcc-8004.2164.1	0.37	-1.4
2,094,906	+		Xcc-8004.2164.1	0.37	-0.6
2,094,906	+		Xcc-8004.2164.1	0.37	-1.0
2,094,907	-		Xcc-8004.2164.1	0.37	-1.0
2,094,907	-		Xcc-8004.2164.1	0.37	+2.4
2,094,907	-		Xcc-8004.2164.1	0.37	+0.9
2,094,907	-		Xcc-8004.2164.1	0.37	+2.2
2,094,907	-		Xcc-8004.2164.1	0.37	-1.3
2,095,144	+		Xcc-8004.2164.1	0.71	+0.3
2,095,144	+		Xcc-8004.2164.1	0.71	-0.9
2,095,145	-		Xcc-8004.2164.1	0.71	-1.3
2,095,145	-		Xcc-8004.2164.1	0.71	+0.3
2,095,145	-		Xcc-8004.2164.1	0.71	-2.4
2,095,145	-		Xcc-8004.2164.1	0.71	+0.8
2,095,145	-		Xcc-8004.2164.1	0.71	+0.6
2,095,145	-		Xcc-8004.2164.1	0.71	-1.2
2,095,145	-		Xcc-8004.2164.1	0.71	+1.3
2,095,315	+				+4.2
2,095,315	+				+1.0
2,095,315	+				+0.4
2,095,315	+				+1.5
2,095,315	+				-2.7
2,095,316	-				-0.4
2,095,316	-				+2.2
2,095,316	-				+0.7
2,095,316	-				-0.6
2,095,316	-				-2.0
2,095,316	-				+0.8
2,095,316	-				+0.5
2,095,316	-				-0.3
2,095,367	-				+0.4
2,095,367	-				-2.2
2,095,367	-				+0.8
2,095,367	-				-2.3
2,095,377	+				-0.2
2,095,377	+				+0.2
2,095,377	+				-1.8
2,095,378	-				-0.3
2,095,590	+				+1.4
2,095,590	+				-0.7
2,095,590	+				+1.3
2,095,591	-				+2.7
2,095,591	-				-2.5
2,095,591	-				+0.4
2,095,591	-				-0.8
2,095,591	-				+1.4
2,095,591	-				-0.7
2,095,773	+		Xcc-8004.2165.1	0.11	+0.5
2,095,774	-		Xcc-8004.2165.1	0.11	-1.7
2,095,787	+		Xcc-8004.2165.1	0.12	+0.3
2,095,787	+		Xcc-8004.2165.1	0.12	-0.8
2,095,788	-		Xcc-8004.2165.1	0.12	+1.1
2,095,788	-		Xcc-8004.2165.1	0.12	+0.0
2,095,788	-		Xcc-8004.2165.1	0.12	-2.2
2,095,788	-		Xcc-8004.2165.1	0.12	-1.3
2,095,788	-		Xcc-8004.2165.1	0.12	+0.4
2,095,796	+		Xcc-8004.2165.1	0.13	-1.9
2,095,796	+		Xcc-8004.2165.1	0.13	-1.0
2,095,796	+		Xcc-8004.2165.1	0.13	+2.4
2,095,796	+		Xcc-8004.2165.1	0.13	+0.3
2,095,796	+		Xcc-8004.2165.1	0.13	-0.2
2,095,796	+		Xcc-8004.2165.1	0.13	-0.3
2,095,796	+		Xcc-8004.2165.1	0.13	+0.8
2,095,796	+		Xcc-8004.2165.1	0.13	-0.6
2,095,797	-		Xcc-8004.2165.1	0.13	-0.2
2,095,797	-		Xcc-8004.2165.1	0.13	-2.2
2,095,797	-		Xcc-8004.2165.1	0.13	-0.0
2,095,797	-		Xcc-8004.2165.1	0.13	+2.0
2,095,797	-		Xcc-8004.2165.1	0.13	+1.2
2,095,986	+		Xcc-8004.2165.1	0.26	+1.4
2,095,987	-		Xcc-8004.2165.1	0.26	-1.4
2,095,987	-		Xcc-8004.2165.1	0.26	+0.8
2,095,987	-		Xcc-8004.2165.1	0.26	+1.1
2,095,987	-		Xcc-8004.2165.1	0.26	-1.2
2,096,003	+		Xcc-8004.2165.1	0.27	-1.9
2,096,003	+		Xcc-8004.2165.1	0.27	-0.6
2,096,003	+		Xcc-8004.2165.1	0.27	+0.4
2,096,004	-		Xcc-8004.2165.1	0.27	-1.3
2,096,004	-		Xcc-8004.2165.1	0.27	+0.4
2,096,004	-		Xcc-8004.2165.1	0.27	+1.6
2,096,004	-		Xcc-8004.2165.1	0.27	+0.1
2,096,004	-		Xcc-8004.2165.1	0.27	+0.3
2,096,090	+		Xcc-8004.2165.1	0.33	+2.7
2,096,090	+		Xcc-8004.2165.1	0.33	+0.9
2,096,091	-		Xcc-8004.2165.1	0.33	-0.0
2,096,091	-		Xcc-8004.2165.1	0.33	-0.3
2,096,091	-		Xcc-8004.2165.1	0.33	+1.7
2,096,091	-		Xcc-8004.2165.1	0.33	-2.5
2,096,091	-		Xcc-8004.2165.1	0.33	+0.1
2,096,091	-		Xcc-8004.2165.1	0.33	-1.3
2,096,234	+		Xcc-8004.2165.1	0.42	+0.3
2,096,234	+		Xcc-8004.2165.1	0.42	-0.1
2,096,234	+		Xcc-8004.2165.1	0.42	-1.6
2,096,234	+		Xcc-8004.2165.1	0.42	-1.0
2,096,234	+		Xcc-8004.2165.1	0.42	+0.2
2,096,234	+		Xcc-8004.2165.1	0.42	-0.9
2,096,235	-		Xcc-8004.2165.1	0.42	-1.2
2,096,235	-		Xcc-8004.2165.1	0.42	-0.2
2,096,235	-		Xcc-8004.2165.1	0.42	-3.6
2,096,235	-		Xcc-8004.2165.1	0.42	-0.9
2,096,396	+		Xcc-8004.2165.1	0.53	-1.4
2,096,397	-		Xcc-8004.2165.1	0.53	+0.9
2,096,408	+		Xcc-8004.2165.1	0.54	-0.9
2,096,408	+		Xcc-8004.2165.1	0.54	+1.0
2,096,409	-		Xcc-8004.2165.1	0.54	-3.0
2,096,409	-		Xcc-8004.2165.1	0.54	-1.4
2,096,409	-		Xcc-8004.2165.1	0.54	+2.6
2,096,417	+		Xcc-8004.2165.1	0.54	-1.8
2,096,417	+		Xcc-8004.2165.1	0.54	-0.3
2,096,417	+		Xcc-8004.2165.1	0.54	-0.5
2,096,417	+		Xcc-8004.2165.1	0.54	-1.6
2,096,417	+		Xcc-8004.2165.1	0.54	-1.2
2,096,418	-		Xcc-8004.2165.1	0.54	-0.4
2,096,418	-		Xcc-8004.2165.1	0.54	-0.5
2,096,418	-		Xcc-8004.2165.1	0.54	+0.5
2,096,418	-		Xcc-8004.2165.1	0.54	+2.7
2,096,418	-		Xcc-8004.2165.1	0.54	-2.5
2,096,441	+		Xcc-8004.2165.1	0.56	+0.2
2,096,441	+		Xcc-8004.2165.1	0.56	-0.7
2,096,442	-		Xcc-8004.2165.1	0.56	-0.3
2,096,442	-		Xcc-8004.2165.1	0.56	-1.4
2,096,442	-		Xcc-8004.2165.1	0.56	+0.1
2,096,748	+		Xcc-8004.2165.1	0.76	+0.6
2,096,748	+		Xcc-8004.2165.1	0.76	-0.2
2,096,749	-		Xcc-8004.2165.1	0.77	+0.0
2,096,749	-		Xcc-8004.2165.1	0.77	+0.3
2,096,749	-		Xcc-8004.2165.1	0.77	+3.1
2,096,786	+		Xcc-8004.2165.1	0.79	+1.1
2,096,786	+		Xcc-8004.2165.1	0.79	-1.6
2,096,787	-		Xcc-8004.2165.1	0.79	-1.4
2,096,787	-		Xcc-8004.2165.1	0.79	+3.2
2,096,787	-		Xcc-8004.2165.1	0.79	-1.5
2,096,843	+		Xcc-8004.2165.1	0.83	-1.5
2,096,843	+		Xcc-8004.2165.1	0.83	-2.4
2,096,843	+		Xcc-8004.2165.1	0.83	+2.1
2,096,843	+		Xcc-8004.2165.1	0.83	+0.4
2,096,843	+		Xcc-8004.2165.1	0.83	-1.4
2,096,844	-		Xcc-8004.2165.1	0.83	+0.7
2,096,844	-		Xcc-8004.2165.1	0.83	-3.4
2,096,844	-		Xcc-8004.2165.1	0.83	+1.7
2,096,844	-		Xcc-8004.2165.1	0.83	+1.6
2,096,844	-		Xcc-8004.2165.1	0.83	-0.7
2,096,852	-		Xcc-8004.2165.1	0.83	+1.8
2,096,868	-		Xcc-8004.2165.1	0.85	-2.6
2,096,926	+		Xcc-8004.2165.1	0.88	-1.3
2,096,926	+		Xcc-8004.2165.1	0.88	-1.5
2,096,927	-		Xcc-8004.2165.1	0.88	+0.7
2,096,958	-				-2.0
2,096,958	-				-0.2
2,097,136	-				-0.9
2,097,136	-				+0.1
2,097,186	+				+0.2
2,097,187	-				-2.0
2,097,187	-				+1.2
2,097,374	-		Xcc-8004.2166.1	0.37	-0.7
2,097,374	-		Xcc-8004.2166.1	0.37	+0.2
2,097,397	+		Xcc-8004.2166.1	0.42	+0.6
2,097,397	+		Xcc-8004.2166.1	0.42	-0.7
2,097,397	+		Xcc-8004.2166.1	0.42	+0.9
2,097,397	+		Xcc-8004.2166.1	0.42	-1.3
2,097,398	-		Xcc-8004.2166.1	0.42	-2.0
2,097,520	+		Xcc-8004.2166.1	0.70	+3.4
2,097,520	+		Xcc-8004.2166.1	0.70	-2.1
2,097,521	-		Xcc-8004.2166.1	0.70	+0.4
2,097,521	-		Xcc-8004.2166.1	0.70	-0.4
2,097,554	+		Xcc-8004.2166.1	0.78	+1.8
2,097,554	+		Xcc-8004.2166.1	0.78	-0.9
2,097,555	-		Xcc-8004.2166.1	0.78	-0.2
2,097,555	-		Xcc-8004.2166.1	0.78	-1.5
2,097,555	-		Xcc-8004.2166.1	0.78	-2.1
2,097,555	-		Xcc-8004.2166.1	0.78	+0.1
2,097,555	-		Xcc-8004.2166.1	0.78	+0.3
2,097,612	+				+1.0
2,097,612	+				+0.9
2,097,613	-				-2.0
2,097,613	-				-2.1
2,097,613	-				+3.4
2,097,613	-				-0.9
2,097,613	-				-0.6
2,097,687	+				+0.1
2,097,687	+				-0.5
2,097,687	+				+2.5
2,097,687	+				+2.7
2,097,687	+				-0.7
2,097,688	-				+1.5
2,097,688	-				+0.8
2,097,688	-				+0.2
2,097,688	-				+1.7
2,097,708	+				-0.3
2,097,708	+				+1.1
2,097,708	+				-2.3
2,097,709	-				-1.0
2,097,709	-				-0.5
2,097,709	-				+0.7
2,097,709	-				+3.7
2,097,709	-				-0.5
2,097,750	-				+1.4
2,097,770	+				-1.6
2,097,770	+				-0.3
2,097,770	+				-1.5
2,097,771	-				+0.0
2,097,771	-				+2.4
2,097,771	-				+1.9
2,097,771	-				-1.8
2,097,771	-				+0.9
2,097,771	-				+3.3
2,097,783	+				+0.9
2,097,783	+				-0.7
2,097,783	+				-0.6
2,097,783	+				+0.1
2,097,783	+				-0.5
2,097,783	+				-1.8
2,097,783	+				-1.3
2,097,783	+				+0.5
2,097,784	-				-1.7
2,097,784	-				+1.7
2,097,784	-				-0.9
2,097,784	-				-0.2
2,097,784	-				+2.4
2,097,784	-				+0.6
2,097,784	-				-1.0
2,097,784	-				-0.1
2,097,784	-				+0.1
2,097,848	+				+0.3
2,097,848	+				-2.6
2,097,848	+				+2.3
2,097,849	-				+1.1
2,097,849	-				-1.4
2,097,920	+				+0.4
2,097,925	+				+0.1
2,097,925	+				+0.2
2,097,925	+				-0.6
2,097,926	-				-2.0
2,097,926	-				-1.7
2,097,977	+				+2.4
2,097,977	+				-0.6
2,097,977	+				-0.1
2,097,977	+				+0.1