Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.157.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.156.1 and Xcc-8004.157.1 are separated by 155 nucleotidesXcc-8004.157.1 and Xcc-8004.158.1 are separated by 286 nucleotides Xcc-8004.156.1: Xcc-8004.156.1 - putative secreted protein, at 144,223 to 145,476 Xcc-8004.156.1 Xcc-8004.157.1: Xcc-8004.157.1 - 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45), at 145,632 to 146,654 Xcc-8004.157.1 Xcc-8004.158.1: Xcc-8004.158.1 - N-acetylglucosamine-regulated TonB-dependent outer membrane receptor, at 146,941 to 149,709 Xcc-8004.158.1 Position (kb) 145 146 147Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 144.704 kb on + strand, within Xcc-8004.156.1at 144.704 kb on + strand, within Xcc-8004.156.1at 145.250 kb on - strand, within Xcc-8004.156.1at 145.250 kb on - strand, within Xcc-8004.156.1at 145.406 kb on + strandat 145.406 kb on + strandat 145.407 kb on - strandat 145.407 kb on - strandat 145.407 kb on - strandat 145.407 kb on - strandat 145.423 kb on + strandat 145.424 kb on - strandat 145.424 kb on - strandat 145.424 kb on - strandat 145.424 kb on - strandat 145.508 kb on + strandat 145.508 kb on + strandat 145.508 kb on + strandat 145.508 kb on + strandat 145.508 kb on + strandat 145.508 kb on + strandat 145.508 kb on + strandat 145.508 kb on + strandat 145.508 kb on + strandat 145.508 kb on + strandat 145.508 kb on + strandat 145.508 kb on + strandat 145.508 kb on + strandat 145.508 kb on + strandat 145.509 kb on - strandat 145.509 kb on - strandat 145.509 kb on - strandat 145.509 kb on - strandat 145.509 kb on - strandat 145.509 kb on - strandat 145.509 kb on - strandat 145.509 kb on - strandat 145.509 kb on - strandat 145.509 kb on - strandat 145.509 kb on - strandat 145.509 kb on - strandat 145.509 kb on - strandat 145.509 kb on - strandat 145.509 kb on - strandat 145.512 kb on + strandat 145.512 kb on + strandat 145.513 kb on - strandat 145.513 kb on - strandat 145.513 kb on - strandat 145.513 kb on - strandat 145.513 kb on - strandat 145.513 kb on - strandat 145.513 kb on - strandat 145.513 kb on - strandat 145.543 kb on + strandat 145.543 kb on + strandat 145.543 kb on + strandat 145.544 kb on - strandat 145.722 kb on + strandat 145.723 kb on - strandat 145.723 kb on - strandat 145.835 kb on + strand, within Xcc-8004.157.1at 145.835 kb on + strand, within Xcc-8004.157.1at 145.836 kb on - strand, within Xcc-8004.157.1at 145.919 kb on + strand, within Xcc-8004.157.1at 146.146 kb on + strand, within Xcc-8004.157.1at 146.146 kb on + strand, within Xcc-8004.157.1at 146.147 kb on - strand, within Xcc-8004.157.1at 146.147 kb on - strand, within Xcc-8004.157.1at 146.293 kb on + strand, within Xcc-8004.157.1at 146.293 kb on + strand, within Xcc-8004.157.1at 146.294 kb on - strand, within Xcc-8004.157.1at 146.338 kb on + strand, within Xcc-8004.157.1at 146.338 kb on + strand, within Xcc-8004.157.1at 146.338 kb on + strand, within Xcc-8004.157.1at 146.339 kb on - strand, within Xcc-8004.157.1at 146.339 kb on - strand, within Xcc-8004.157.1at 146.339 kb on - strand, within Xcc-8004.157.1at 146.339 kb on - strand, within Xcc-8004.157.1at 146.383 kb on + strand, within Xcc-8004.157.1at 146.383 kb on + strand, within Xcc-8004.157.1at 146.383 kb on + strand, within Xcc-8004.157.1at 146.383 kb on + strand, within Xcc-8004.157.1at 146.383 kb on + strand, within Xcc-8004.157.1at 146.383 kb on + strand, within Xcc-8004.157.1at 146.383 kb on + strand, within Xcc-8004.157.1at 146.383 kb on + strand, within Xcc-8004.157.1at 146.383 kb on + strand, within Xcc-8004.157.1at 146.383 kb on + strand, within Xcc-8004.157.1at 146.383 kb on + strand, within Xcc-8004.157.1at 146.383 kb on + strand, within Xcc-8004.157.1at 146.384 kb on - strand, within Xcc-8004.157.1at 146.384 kb on - strand, within Xcc-8004.157.1at 146.384 kb on - strand, within Xcc-8004.157.1at 146.384 kb on - strand, within Xcc-8004.157.1at 146.384 kb on - strand, within Xcc-8004.157.1at 146.384 kb on - strand, within Xcc-8004.157.1at 146.466 kb on + strand, within Xcc-8004.157.1at 146.654 kb on + strandat 146.655 kb on - strandat 146.663 kb on + strandat 146.663 kb on + strandat 146.663 kb on + strandat 146.664 kb on - strandat 146.664 kb on - strandat 146.664 kb on - strandat 146.664 kb on - strandat 146.664 kb on - strandat 146.860 kb on - strandat 146.860 kb on - strandat 147.499 kb on + strand, within Xcc-8004.158.1at 147.499 kb on + strand, within Xcc-8004.158.1at 147.499 kb on + strand, within Xcc-8004.158.1at 147.500 kb on - strand, within Xcc-8004.158.1at 147.500 kb on - strand, within Xcc-8004.158.1at 147.634 kb on + strand, within Xcc-8004.158.1at 147.634 kb on + strand, within Xcc-8004.158.1at 147.634 kb on + strand, within Xcc-8004.158.1at 147.634 kb on + strand, within Xcc-8004.158.1at 147.634 kb on + strand, within Xcc-8004.158.1at 147.635 kb on - strand, within Xcc-8004.158.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
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144,704 + Xcc-8004.156.1 0.38 -0.6
144,704 + Xcc-8004.156.1 0.38 +2.8
145,250 - Xcc-8004.156.1 0.82 +0.3
145,250 - Xcc-8004.156.1 0.82 +2.1
145,406 + -1.9
145,406 + -2.8
145,407 - -0.2
145,407 - +1.6
145,407 - +1.8
145,407 - +0.3
145,423 + +1.2
145,424 - -0.4
145,424 - +1.2
145,424 - +0.2
145,424 - -1.8
145,508 + -2.0
145,508 + +0.7
145,508 + +0.7
145,508 + +0.3
145,508 + +1.6
145,508 + -1.7
145,508 + +0.5
145,508 + +1.0
145,508 + -2.4
145,508 + -0.1
145,508 + +1.3
145,508 + +0.9
145,508 + -1.2
145,508 + -2.6
145,509 - +3.3
145,509 - +0.1
145,509 - +0.4
145,509 - +1.5
145,509 - +0.0
145,509 - -3.0
145,509 - -1.7
145,509 - -0.6
145,509 - -0.8
145,509 - -0.1
145,509 - +1.2
145,509 - -0.2
145,509 - -0.6
145,509 - -3.0
145,509 - -1.0
145,512 + -2.1
145,512 + +1.6
145,513 - +2.0
145,513 - +0.8
145,513 - -2.1
145,513 - +1.2
145,513 - -1.9
145,513 - -0.4
145,513 - -0.4
145,513 - -0.4
145,543 + +2.1
145,543 + -3.2
145,543 + -1.2
145,544 - -1.9
145,722 + +1.8
145,723 - -0.6
145,723 - +1.5
145,835 + Xcc-8004.157.1 0.20 -0.6
145,835 + Xcc-8004.157.1 0.20 +1.2
145,836 - Xcc-8004.157.1 0.20 -2.0
145,919 + Xcc-8004.157.1 0.28 -0.3
146,146 + Xcc-8004.157.1 0.50 -1.3
146,146 + Xcc-8004.157.1 0.50 -0.2
146,147 - Xcc-8004.157.1 0.50 -1.6
146,147 - Xcc-8004.157.1 0.50 -1.4
146,293 + Xcc-8004.157.1 0.65 -2.2
146,293 + Xcc-8004.157.1 0.65 +1.6
146,294 - Xcc-8004.157.1 0.65 -1.7
146,338 + Xcc-8004.157.1 0.69 -1.1
146,338 + Xcc-8004.157.1 0.69 +0.6
146,338 + Xcc-8004.157.1 0.69 -1.2
146,339 - Xcc-8004.157.1 0.69 +1.3
146,339 - Xcc-8004.157.1 0.69 -0.4
146,339 - Xcc-8004.157.1 0.69 -0.4
146,339 - Xcc-8004.157.1 0.69 -1.4
146,383 + Xcc-8004.157.1 0.73 -0.7
146,383 + Xcc-8004.157.1 0.73 -2.2
146,383 + Xcc-8004.157.1 0.73 -2.8
146,383 + Xcc-8004.157.1 0.73 -0.3
146,383 + Xcc-8004.157.1 0.73 -1.0
146,383 + Xcc-8004.157.1 0.73 +0.5
146,383 + Xcc-8004.157.1 0.73 +0.8
146,383 + Xcc-8004.157.1 0.73 +1.3
146,383 + Xcc-8004.157.1 0.73 +0.4
146,383 + Xcc-8004.157.1 0.73 -1.5
146,383 + Xcc-8004.157.1 0.73 -0.6
146,383 + Xcc-8004.157.1 0.73 +3.4
146,384 - Xcc-8004.157.1 0.74 -0.5
146,384 - Xcc-8004.157.1 0.74 -2.0
146,384 - Xcc-8004.157.1 0.74 +0.1
146,384 - Xcc-8004.157.1 0.74 -2.8
146,384 - Xcc-8004.157.1 0.74 +0.6
146,384 - Xcc-8004.157.1 0.74 +2.4
146,466 + Xcc-8004.157.1 0.82 -1.7
146,654 + +0.7
146,655 - -1.8
146,663 + -2.8
146,663 + -2.5
146,663 + +1.5
146,664 - -2.4
146,664 - -1.9
146,664 - +1.6
146,664 - -0.7
146,664 - -0.0
146,860 - -1.2
146,860 - +0.8
147,499 + Xcc-8004.158.1 0.20 -0.0
147,499 + Xcc-8004.158.1 0.20 -0.2
147,499 + Xcc-8004.158.1 0.20 +0.8
147,500 - Xcc-8004.158.1 0.20 -2.5
147,500 - Xcc-8004.158.1 0.20 +1.0
147,634 + Xcc-8004.158.1 0.25 +0.9
147,634 + Xcc-8004.158.1 0.25 -2.1
147,634 + Xcc-8004.158.1 0.25 +0.9
147,634 + Xcc-8004.158.1 0.25 +2.1
147,634 + Xcc-8004.158.1 0.25 -2.8
147,635 - Xcc-8004.158.1 0.25 -0.3

Or see this region's nucleotide sequence