Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1225.1 and Xcc-8004.1226.1 overlap by 4 nucleotides Xcc-8004.1226.1 and Xcc-8004.1228.1 are separated by 197 nucleotides
Xcc-8004.1225.1: Xcc-8004.1225.1 - Thymidine phosphorylase (EC 2.4.2.4), at 1,156,480 to 1,158,918
Xcc-8004.1225.1
Xcc-8004.1226.1: Xcc-8004.1226.1 - FIG01210021: hypothetical protein, at 1,158,915 to 1,159,259
Xcc-8004.1226.1
Xcc-8004.1228.1: Xcc-8004.1228.1 - Xaa-Pro dipeptidase PepQ (EC 3.4.13.9), at 1,159,457 to 1,160,782
Xcc-8004.1228.1
Position (kb) 1158
1159
1160 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1157.984 kb on + strand, within Xcc-8004.1225.1 at 1157.984 kb on + strand, within Xcc-8004.1225.1 at 1157.985 kb on - strand, within Xcc-8004.1225.1 at 1158.024 kb on + strand, within Xcc-8004.1225.1 at 1158.024 kb on + strand, within Xcc-8004.1225.1 at 1158.024 kb on + strand, within Xcc-8004.1225.1 at 1158.024 kb on + strand, within Xcc-8004.1225.1 at 1158.024 kb on + strand, within Xcc-8004.1225.1 at 1158.024 kb on + strand, within Xcc-8004.1225.1 at 1158.025 kb on - strand, within Xcc-8004.1225.1 at 1158.028 kb on + strand, within Xcc-8004.1225.1 at 1158.028 kb on + strand, within Xcc-8004.1225.1 at 1158.028 kb on + strand, within Xcc-8004.1225.1 at 1158.028 kb on + strand, within Xcc-8004.1225.1 at 1158.028 kb on + strand, within Xcc-8004.1225.1 at 1158.028 kb on + strand, within Xcc-8004.1225.1 at 1158.028 kb on + strand, within Xcc-8004.1225.1 at 1158.029 kb on - strand, within Xcc-8004.1225.1 at 1158.029 kb on - strand, within Xcc-8004.1225.1 at 1158.029 kb on - strand, within Xcc-8004.1225.1 at 1158.029 kb on - strand, within Xcc-8004.1225.1 at 1158.240 kb on - strand, within Xcc-8004.1225.1 at 1158.607 kb on + strand, within Xcc-8004.1225.1 at 1158.608 kb on - strand, within Xcc-8004.1225.1 at 1158.608 kb on - strand, within Xcc-8004.1225.1 at 1158.608 kb on - strand, within Xcc-8004.1225.1 at 1158.697 kb on + strand at 1158.698 kb on - strand at 1159.071 kb on + strand, within Xcc-8004.1226.1 at 1159.071 kb on + strand, within Xcc-8004.1226.1 at 1159.072 kb on - strand, within Xcc-8004.1226.1 at 1159.257 kb on + strand at 1159.257 kb on + strand at 1159.257 kb on + strand at 1159.456 kb on + strand at 1159.456 kb on + strand at 1159.457 kb on - strand at 1159.457 kb on - strand at 1159.484 kb on + strand at 1159.484 kb on + strand at 1159.485 kb on - strand at 1159.581 kb on - strand at 1159.581 kb on - strand at 1159.677 kb on - strand, within Xcc-8004.1228.1 at 1159.677 kb on - strand, within Xcc-8004.1228.1 at 1159.725 kb on - strand, within Xcc-8004.1228.1 at 1159.919 kb on + strand, within Xcc-8004.1228.1 at 1159.919 kb on + strand, within Xcc-8004.1228.1 at 1159.920 kb on - strand, within Xcc-8004.1228.1 at 1159.920 kb on - strand, within Xcc-8004.1228.1 at 1159.943 kb on + strand, within Xcc-8004.1228.1 at 1159.943 kb on + strand, within Xcc-8004.1228.1 at 1160.051 kb on + strand, within Xcc-8004.1228.1 at 1160.051 kb on + strand, within Xcc-8004.1228.1 at 1160.051 kb on + strand, within Xcc-8004.1228.1 at 1160.136 kb on - strand, within Xcc-8004.1228.1 at 1160.136 kb on - strand, within Xcc-8004.1228.1 at 1160.210 kb on + strand, within Xcc-8004.1228.1 at 1160.234 kb on + strand, within Xcc-8004.1228.1 at 1160.235 kb on - strand, within Xcc-8004.1228.1 at 1160.235 kb on - strand, within Xcc-8004.1228.1 at 1160.235 kb on - strand, within Xcc-8004.1228.1 at 1160.235 kb on - strand, within Xcc-8004.1228.1
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days remove 1,157,984 + Xcc-8004.1225.1 0.62 +2.4 1,157,984 + Xcc-8004.1225.1 0.62 -2.0 1,157,985 - Xcc-8004.1225.1 0.62 +1.7 1,158,024 + Xcc-8004.1225.1 0.63 +0.0 1,158,024 + Xcc-8004.1225.1 0.63 +1.2 1,158,024 + Xcc-8004.1225.1 0.63 -1.4 1,158,024 + Xcc-8004.1225.1 0.63 +2.4 1,158,024 + Xcc-8004.1225.1 0.63 +0.6 1,158,024 + Xcc-8004.1225.1 0.63 +0.3 1,158,025 - Xcc-8004.1225.1 0.63 +0.6 1,158,028 + Xcc-8004.1225.1 0.63 +1.4 1,158,028 + Xcc-8004.1225.1 0.63 -1.8 1,158,028 + Xcc-8004.1225.1 0.63 -0.6 1,158,028 + Xcc-8004.1225.1 0.63 -0.4 1,158,028 + Xcc-8004.1225.1 0.63 -0.8 1,158,028 + Xcc-8004.1225.1 0.63 -2.0 1,158,028 + Xcc-8004.1225.1 0.63 +0.9 1,158,029 - Xcc-8004.1225.1 0.64 -0.0 1,158,029 - Xcc-8004.1225.1 0.64 +0.9 1,158,029 - Xcc-8004.1225.1 0.64 +3.3 1,158,029 - Xcc-8004.1225.1 0.64 -1.4 1,158,240 - Xcc-8004.1225.1 0.72 +1.1 1,158,607 + Xcc-8004.1225.1 0.87 -1.9 1,158,608 - Xcc-8004.1225.1 0.87 -0.7 1,158,608 - Xcc-8004.1225.1 0.87 +2.6 1,158,608 - Xcc-8004.1225.1 0.87 -1.4 1,158,697 + +1.5 1,158,698 - +0.8 1,159,071 + Xcc-8004.1226.1 0.45 -1.0 1,159,071 + Xcc-8004.1226.1 0.45 +1.3 1,159,072 - Xcc-8004.1226.1 0.46 +1.1 1,159,257 + -0.1 1,159,257 + +0.2 1,159,257 + +1.4 1,159,456 + -1.0 1,159,456 + -0.9 1,159,457 - +1.6 1,159,457 - +0.6 1,159,484 + +1.6 1,159,484 + +0.6 1,159,485 - +0.2 1,159,581 - -2.5 1,159,581 - -2.0 1,159,677 - Xcc-8004.1228.1 0.17 +1.0 1,159,677 - Xcc-8004.1228.1 0.17 +0.2 1,159,725 - Xcc-8004.1228.1 0.20 -1.1 1,159,919 + Xcc-8004.1228.1 0.35 +1.4 1,159,919 + Xcc-8004.1228.1 0.35 -0.4 1,159,920 - Xcc-8004.1228.1 0.35 -0.6 1,159,920 - Xcc-8004.1228.1 0.35 -0.8 1,159,943 + Xcc-8004.1228.1 0.37 +2.1 1,159,943 + Xcc-8004.1228.1 0.37 +2.1 1,160,051 + Xcc-8004.1228.1 0.45 -0.2 1,160,051 + Xcc-8004.1228.1 0.45 -0.0 1,160,051 + Xcc-8004.1228.1 0.45 -1.1 1,160,136 - Xcc-8004.1228.1 0.51 -2.9 1,160,136 - Xcc-8004.1228.1 0.51 -0.3 1,160,210 + Xcc-8004.1228.1 0.57 -0.9 1,160,234 + Xcc-8004.1228.1 0.59 -3.5 1,160,235 - Xcc-8004.1228.1 0.59 -0.8 1,160,235 - Xcc-8004.1228.1 0.59 +1.7 1,160,235 - Xcc-8004.1228.1 0.59 -1.0 1,160,235 - Xcc-8004.1228.1 0.59 -0.6
Or see this region's nucleotide sequence