Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_746 and Pf6N2E2_747 are separated by 3 nucleotides Pf6N2E2_747 and Pf6N2E2_748 are separated by 95 nucleotides Pf6N2E2_748 and Pf6N2E2_749 are separated by 1 nucleotides Pf6N2E2_749 and Pf6N2E2_750 are separated by 365 nucleotides
Pf6N2E2_746 - FIG00958097: hypothetical protein, at 856,829 to 857,083
_746
Pf6N2E2_747 - Transcriptional regulator in custer with plant-induced nitrilase, at 857,087 to 857,986
_747
Pf6N2E2_748 - Plant-induced nitrilase (EC 3.5.5.1), hydrolyses beta-cyano-L-alanine, at 858,082 to 859,005
_748
Pf6N2E2_749 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 859,007 to 859,477
_749
Pf6N2E2_750 - Transcriptional regulator, DeoR family, at 859,843 to 860,559
_750
Position (kb) 858
859
860 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 857.082 kb on - strand at 857.082 kb on - strand at 857.088 kb on + strand at 857.088 kb on + strand at 857.088 kb on + strand at 857.089 kb on - strand at 857.089 kb on - strand at 857.123 kb on + strand at 857.123 kb on + strand at 857.476 kb on - strand, within Pf6N2E2_747 at 857.707 kb on - strand, within Pf6N2E2_747 at 857.752 kb on + strand, within Pf6N2E2_747 at 857.831 kb on + strand, within Pf6N2E2_747 at 857.831 kb on + strand, within Pf6N2E2_747 at 857.831 kb on + strand, within Pf6N2E2_747 at 857.831 kb on + strand, within Pf6N2E2_747 at 857.832 kb on - strand, within Pf6N2E2_747 at 857.832 kb on - strand, within Pf6N2E2_747 at 857.844 kb on + strand, within Pf6N2E2_747 at 857.844 kb on + strand, within Pf6N2E2_747 at 857.844 kb on + strand, within Pf6N2E2_747 at 857.845 kb on - strand, within Pf6N2E2_747 at 857.980 kb on + strand at 858.163 kb on + strand at 858.163 kb on + strand at 858.302 kb on - strand, within Pf6N2E2_748 at 858.419 kb on - strand, within Pf6N2E2_748 at 858.419 kb on - strand, within Pf6N2E2_748 at 858.419 kb on - strand, within Pf6N2E2_748 at 858.433 kb on + strand, within Pf6N2E2_748 at 858.433 kb on + strand, within Pf6N2E2_748 at 858.613 kb on + strand, within Pf6N2E2_748 at 858.614 kb on - strand, within Pf6N2E2_748 at 858.614 kb on - strand, within Pf6N2E2_748 at 858.833 kb on + strand, within Pf6N2E2_748 at 858.833 kb on + strand, within Pf6N2E2_748 at 858.910 kb on + strand, within Pf6N2E2_748 at 858.917 kb on - strand at 858.934 kb on + strand at 858.935 kb on - strand at 858.935 kb on - strand at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.105 kb on - strand, within Pf6N2E2_749 at 859.105 kb on - strand, within Pf6N2E2_749 at 859.443 kb on - strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.807 kb on - strand at 859.807 kb on - strand at 859.851 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 857,082 - +1.5 857,082 - +0.3 857,088 + +0.9 857,088 + +0.3 857,088 + -0.6 857,089 - -1.7 857,089 - +1.5 857,123 + -0.1 857,123 + +2.4 857,476 - Pf6N2E2_747 0.43 -1.2 857,707 - Pf6N2E2_747 0.69 +1.6 857,752 + Pf6N2E2_747 0.74 +0.8 857,831 + Pf6N2E2_747 0.83 -1.7 857,831 + Pf6N2E2_747 0.83 -1.8 857,831 + Pf6N2E2_747 0.83 -2.3 857,831 + Pf6N2E2_747 0.83 +0.3 857,832 - Pf6N2E2_747 0.83 -1.2 857,832 - Pf6N2E2_747 0.83 +1.6 857,844 + Pf6N2E2_747 0.84 +0.8 857,844 + Pf6N2E2_747 0.84 +0.2 857,844 + Pf6N2E2_747 0.84 +0.7 857,845 - Pf6N2E2_747 0.84 +0.1 857,980 + +0.7 858,163 + -0.7 858,163 + -0.7 858,302 - Pf6N2E2_748 0.24 -1.4 858,419 - Pf6N2E2_748 0.36 -1.1 858,419 - Pf6N2E2_748 0.36 +0.3 858,419 - Pf6N2E2_748 0.36 -0.3 858,433 + Pf6N2E2_748 0.38 -2.3 858,433 + Pf6N2E2_748 0.38 -0.1 858,613 + Pf6N2E2_748 0.57 -0.1 858,614 - Pf6N2E2_748 0.58 +1.3 858,614 - Pf6N2E2_748 0.58 -1.1 858,833 + Pf6N2E2_748 0.81 -1.5 858,833 + Pf6N2E2_748 0.81 -1.6 858,910 + Pf6N2E2_748 0.90 -1.1 858,917 - +3.5 858,934 + -1.0 858,935 - -1.1 858,935 - +1.3 859,104 + Pf6N2E2_749 0.21 +0.0 859,104 + Pf6N2E2_749 0.21 -0.4 859,104 + Pf6N2E2_749 0.21 -0.7 859,104 + Pf6N2E2_749 0.21 -0.9 859,104 + Pf6N2E2_749 0.21 +0.2 859,104 + Pf6N2E2_749 0.21 +0.3 859,104 + Pf6N2E2_749 0.21 -1.2 859,105 - Pf6N2E2_749 0.21 -1.4 859,105 - Pf6N2E2_749 0.21 -1.9 859,443 - -1.3 859,754 + -1.3 859,754 + -0.7 859,754 + +0.9 859,754 + -1.4 859,754 + +3.2 859,754 + -1.2 859,754 + +1.1 859,754 + -1.4 859,754 + +0.3 859,755 - +1.2 859,755 - +0.9 859,755 - +1.2 859,755 - -0.5 859,755 - +0.3 859,755 - +0.3 859,755 - -0.4 859,755 - +0.6 859,807 - +1.1 859,807 - -1.0 859,851 + -0.2
Or see this region's nucleotide sequence