Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4947

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4945 and Pf6N2E2_4946 are separated by 15 nucleotidesPf6N2E2_4946 and Pf6N2E2_4947 are separated by 19 nucleotidesPf6N2E2_4947 and Pf6N2E2_4948 are separated by 12 nucleotides Pf6N2E2_4945 - FIG00955711: hypothetical protein, at 5,701,791 to 5,702,453 _4945 Pf6N2E2_4946 - Membrane protein with DUF350 domain, at 5,702,469 to 5,702,897 _4946 Pf6N2E2_4947 - FIG00954030: hypothetical protein, at 5,702,917 to 5,703,618 _4947 Pf6N2E2_4948 - Similarity with glutathionylspermidine synthase (EC 6.3.1.8), group 1, at 5,703,631 to 5,704,788 _4948 Position (kb) 5702 5703 5704Strain fitness (log2 ratio) -2 -1 0 1 2at 5702.025 kb on + strand, within Pf6N2E2_4945at 5702.025 kb on + strand, within Pf6N2E2_4945at 5702.026 kb on - strand, within Pf6N2E2_4945at 5702.026 kb on - strand, within Pf6N2E2_4945at 5702.026 kb on - strand, within Pf6N2E2_4945at 5702.044 kb on - strand, within Pf6N2E2_4945at 5702.044 kb on - strand, within Pf6N2E2_4945at 5702.044 kb on - strand, within Pf6N2E2_4945at 5702.109 kb on + strand, within Pf6N2E2_4945at 5702.110 kb on - strand, within Pf6N2E2_4945at 5702.110 kb on - strand, within Pf6N2E2_4945at 5702.118 kb on + strand, within Pf6N2E2_4945at 5702.118 kb on + strand, within Pf6N2E2_4945at 5702.119 kb on - strand, within Pf6N2E2_4945at 5702.119 kb on - strand, within Pf6N2E2_4945at 5702.119 kb on - strand, within Pf6N2E2_4945at 5702.119 kb on - strand, within Pf6N2E2_4945at 5702.190 kb on + strand, within Pf6N2E2_4945at 5702.212 kb on - strand, within Pf6N2E2_4945at 5702.292 kb on + strand, within Pf6N2E2_4945at 5702.319 kb on + strand, within Pf6N2E2_4945at 5702.320 kb on - strand, within Pf6N2E2_4945at 5702.427 kb on + strandat 5702.427 kb on + strandat 5702.428 kb on - strandat 5702.428 kb on - strandat 5702.428 kb on - strandat 5702.428 kb on - strandat 5702.456 kb on - strandat 5702.526 kb on + strand, within Pf6N2E2_4946at 5702.526 kb on + strand, within Pf6N2E2_4946at 5702.527 kb on - strand, within Pf6N2E2_4946at 5702.527 kb on - strand, within Pf6N2E2_4946at 5702.527 kb on - strand, within Pf6N2E2_4946at 5702.527 kb on - strand, within Pf6N2E2_4946at 5702.527 kb on - strand, within Pf6N2E2_4946at 5702.571 kb on + strand, within Pf6N2E2_4946at 5702.571 kb on + strand, within Pf6N2E2_4946at 5702.571 kb on + strand, within Pf6N2E2_4946at 5702.571 kb on + strand, within Pf6N2E2_4946at 5702.572 kb on - strand, within Pf6N2E2_4946at 5702.572 kb on - strand, within Pf6N2E2_4946at 5702.572 kb on - strand, within Pf6N2E2_4946at 5702.572 kb on - strand, within Pf6N2E2_4946at 5702.825 kb on + strand, within Pf6N2E2_4946at 5702.829 kb on + strand, within Pf6N2E2_4946at 5702.829 kb on + strand, within Pf6N2E2_4946at 5702.829 kb on + strand, within Pf6N2E2_4946at 5702.829 kb on + strand, within Pf6N2E2_4946at 5702.829 kb on + strand, within Pf6N2E2_4946at 5702.829 kb on + strand, within Pf6N2E2_4946at 5702.829 kb on + strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.932 kb on + strandat 5702.932 kb on + strandat 5702.933 kb on - strandat 5702.933 kb on - strandat 5702.933 kb on - strandat 5702.933 kb on - strandat 5702.933 kb on - strandat 5702.933 kb on - strandat 5703.019 kb on + strand, within Pf6N2E2_4947at 5703.020 kb on - strand, within Pf6N2E2_4947at 5703.020 kb on - strand, within Pf6N2E2_4947at 5703.020 kb on - strand, within Pf6N2E2_4947at 5703.020 kb on - strand, within Pf6N2E2_4947at 5703.065 kb on + strand, within Pf6N2E2_4947at 5703.069 kb on + strand, within Pf6N2E2_4947at 5703.069 kb on + strand, within Pf6N2E2_4947at 5703.069 kb on + strand, within Pf6N2E2_4947at 5703.069 kb on + strand, within Pf6N2E2_4947at 5703.070 kb on - strand, within Pf6N2E2_4947at 5703.070 kb on - strand, within Pf6N2E2_4947at 5703.085 kb on + strand, within Pf6N2E2_4947at 5703.085 kb on + strand, within Pf6N2E2_4947at 5703.085 kb on + strand, within Pf6N2E2_4947at 5703.086 kb on - strand, within Pf6N2E2_4947at 5703.127 kb on + strand, within Pf6N2E2_4947at 5703.127 kb on + strand, within Pf6N2E2_4947at 5703.373 kb on + strand, within Pf6N2E2_4947at 5703.374 kb on - strand, within Pf6N2E2_4947at 5703.374 kb on - strand, within Pf6N2E2_4947at 5703.391 kb on + strand, within Pf6N2E2_4947at 5703.391 kb on + strand, within Pf6N2E2_4947at 5703.496 kb on + strand, within Pf6N2E2_4947at 5703.496 kb on + strand, within Pf6N2E2_4947at 5703.496 kb on + strand, within Pf6N2E2_4947at 5703.496 kb on + strand, within Pf6N2E2_4947at 5703.496 kb on + strand, within Pf6N2E2_4947at 5703.496 kb on + strand, within Pf6N2E2_4947at 5703.496 kb on + strand, within Pf6N2E2_4947at 5703.496 kb on + strand, within Pf6N2E2_4947at 5703.496 kb on + strand, within Pf6N2E2_4947at 5703.497 kb on - strand, within Pf6N2E2_4947at 5703.497 kb on - strand, within Pf6N2E2_4947at 5703.739 kb on + strandat 5703.742 kb on + strandat 5703.743 kb on - strandat 5703.743 kb on - strandat 5703.743 kb on - strandat 5703.743 kb on - strandat 5703.804 kb on + strand, within Pf6N2E2_4948at 5703.804 kb on + strand, within Pf6N2E2_4948at 5703.804 kb on + strand, within Pf6N2E2_4948at 5703.804 kb on + strand, within Pf6N2E2_4948at 5703.804 kb on + strand, within Pf6N2E2_4948at 5703.804 kb on + strand, within Pf6N2E2_4948at 5703.804 kb on + strand, within Pf6N2E2_4948at 5703.804 kb on + strand, within Pf6N2E2_4948at 5703.804 kb on + strand, within Pf6N2E2_4948at 5703.804 kb on + strand, within Pf6N2E2_4948at 5703.804 kb on + strand, within Pf6N2E2_4948at 5703.804 kb on + strand, within Pf6N2E2_4948at 5703.804 kb on + strand, within Pf6N2E2_4948at 5703.805 kb on - strand, within Pf6N2E2_4948at 5703.805 kb on - strand, within Pf6N2E2_4948at 5703.805 kb on - strand, within Pf6N2E2_4948at 5703.805 kb on - strand, within Pf6N2E2_4948at 5703.805 kb on - strand, within Pf6N2E2_4948at 5703.805 kb on - strand, within Pf6N2E2_4948at 5703.805 kb on - strand, within Pf6N2E2_4948at 5703.805 kb on - strand, within Pf6N2E2_4948at 5703.805 kb on - strand, within Pf6N2E2_4948at 5703.805 kb on - strand, within Pf6N2E2_4948at 5703.925 kb on + strand, within Pf6N2E2_4948at 5703.925 kb on + strand, within Pf6N2E2_4948at 5703.926 kb on - strand, within Pf6N2E2_4948at 5703.947 kb on - strand, within Pf6N2E2_4948at 5703.985 kb on + strand, within Pf6N2E2_4948at 5703.985 kb on + strand, within Pf6N2E2_4948at 5703.985 kb on + strand, within Pf6N2E2_4948at 5703.986 kb on - strand, within Pf6N2E2_4948at 5703.986 kb on - strand, within Pf6N2E2_4948at 5704.006 kb on + strand, within Pf6N2E2_4948at 5704.007 kb on - strand, within Pf6N2E2_4948at 5704.007 kb on - strand, within Pf6N2E2_4948at 5704.007 kb on - strand, within Pf6N2E2_4948at 5704.007 kb on - strand, within Pf6N2E2_4948at 5704.148 kb on - strand, within Pf6N2E2_4948at 5704.148 kb on - strand, within Pf6N2E2_4948at 5704.195 kb on + strand, within Pf6N2E2_4948at 5704.195 kb on + strand, within Pf6N2E2_4948at 5704.195 kb on + strand, within Pf6N2E2_4948at 5704.195 kb on + strand, within Pf6N2E2_4948at 5704.196 kb on - strand, within Pf6N2E2_4948at 5704.196 kb on - strand, within Pf6N2E2_4948at 5704.380 kb on + strand, within Pf6N2E2_4948at 5704.381 kb on - strand, within Pf6N2E2_4948at 5704.592 kb on + strand, within Pf6N2E2_4948at 5704.592 kb on + strand, within Pf6N2E2_4948at 5704.592 kb on + strand, within Pf6N2E2_4948at 5704.592 kb on + strand, within Pf6N2E2_4948at 5704.592 kb on + strand, within Pf6N2E2_4948at 5704.593 kb on - strand, within Pf6N2E2_4948at 5704.610 kb on - strand, within Pf6N2E2_4948

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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5,702,025 + Pf6N2E2_4945 0.35 -0.2
5,702,025 + Pf6N2E2_4945 0.35 +1.8
5,702,026 - Pf6N2E2_4945 0.35 +0.4
5,702,026 - Pf6N2E2_4945 0.35 +0.6
5,702,026 - Pf6N2E2_4945 0.35 -2.3
5,702,044 - Pf6N2E2_4945 0.38 -0.4
5,702,044 - Pf6N2E2_4945 0.38 +2.0
5,702,044 - Pf6N2E2_4945 0.38 +1.0
5,702,109 + Pf6N2E2_4945 0.48 +0.3
5,702,110 - Pf6N2E2_4945 0.48 -0.5
5,702,110 - Pf6N2E2_4945 0.48 +0.3
5,702,118 + Pf6N2E2_4945 0.49 -1.4
5,702,118 + Pf6N2E2_4945 0.49 -0.6
5,702,119 - Pf6N2E2_4945 0.49 -1.0
5,702,119 - Pf6N2E2_4945 0.49 +0.0
5,702,119 - Pf6N2E2_4945 0.49 +0.5
5,702,119 - Pf6N2E2_4945 0.49 -1.2
5,702,190 + Pf6N2E2_4945 0.60 +0.3
5,702,212 - Pf6N2E2_4945 0.63 -1.0
5,702,292 + Pf6N2E2_4945 0.76 +0.2
5,702,319 + Pf6N2E2_4945 0.80 +1.1
5,702,320 - Pf6N2E2_4945 0.80 +0.7
5,702,427 + +1.5
5,702,427 + -0.2
5,702,428 - -0.5
5,702,428 - -0.2
5,702,428 - +1.8
5,702,428 - +0.9
5,702,456 - -2.0
5,702,526 + Pf6N2E2_4946 0.13 +0.7
5,702,526 + Pf6N2E2_4946 0.13 +0.5
5,702,527 - Pf6N2E2_4946 0.14 +0.9
5,702,527 - Pf6N2E2_4946 0.14 -0.4
5,702,527 - Pf6N2E2_4946 0.14 -1.4
5,702,527 - Pf6N2E2_4946 0.14 +2.6
5,702,527 - Pf6N2E2_4946 0.14 +0.1
5,702,571 + Pf6N2E2_4946 0.24 -1.2
5,702,571 + Pf6N2E2_4946 0.24 +0.9
5,702,571 + Pf6N2E2_4946 0.24 +1.2
5,702,571 + Pf6N2E2_4946 0.24 +0.6
5,702,572 - Pf6N2E2_4946 0.24 -0.4
5,702,572 - Pf6N2E2_4946 0.24 +0.1
5,702,572 - Pf6N2E2_4946 0.24 +1.1
5,702,572 - Pf6N2E2_4946 0.24 -1.9
5,702,825 + Pf6N2E2_4946 0.83 -1.2
5,702,829 + Pf6N2E2_4946 0.84 +0.7
5,702,829 + Pf6N2E2_4946 0.84 -0.4
5,702,829 + Pf6N2E2_4946 0.84 -0.5
5,702,829 + Pf6N2E2_4946 0.84 +1.7
5,702,829 + Pf6N2E2_4946 0.84 +1.0
5,702,829 + Pf6N2E2_4946 0.84 +0.5
5,702,829 + Pf6N2E2_4946 0.84 +1.1
5,702,830 - Pf6N2E2_4946 0.84 +0.1
5,702,830 - Pf6N2E2_4946 0.84 -1.1
5,702,830 - Pf6N2E2_4946 0.84 +0.9
5,702,830 - Pf6N2E2_4946 0.84 +1.3
5,702,830 - Pf6N2E2_4946 0.84 +0.2
5,702,830 - Pf6N2E2_4946 0.84 +0.4
5,702,830 - Pf6N2E2_4946 0.84 +0.1
5,702,830 - Pf6N2E2_4946 0.84 +1.6
5,702,830 - Pf6N2E2_4946 0.84 -1.4
5,702,830 - Pf6N2E2_4946 0.84 -0.5
5,702,830 - Pf6N2E2_4946 0.84 +0.0
5,702,830 - Pf6N2E2_4946 0.84 +0.1
5,702,830 - Pf6N2E2_4946 0.84 -1.4
5,702,830 - Pf6N2E2_4946 0.84 +0.2
5,702,830 - Pf6N2E2_4946 0.84 +0.9
5,702,932 + +0.2
5,702,932 + +1.1
5,702,933 - +2.1
5,702,933 - +0.4
5,702,933 - +0.7
5,702,933 - +0.8
5,702,933 - +0.3
5,702,933 - +0.5
5,703,019 + Pf6N2E2_4947 0.15 -0.6
5,703,020 - Pf6N2E2_4947 0.15 +0.6
5,703,020 - Pf6N2E2_4947 0.15 +0.1
5,703,020 - Pf6N2E2_4947 0.15 -1.1
5,703,020 - Pf6N2E2_4947 0.15 +0.7
5,703,065 + Pf6N2E2_4947 0.21 +0.6
5,703,069 + Pf6N2E2_4947 0.22 -0.3
5,703,069 + Pf6N2E2_4947 0.22 -0.2
5,703,069 + Pf6N2E2_4947 0.22 +0.3
5,703,069 + Pf6N2E2_4947 0.22 -0.4
5,703,070 - Pf6N2E2_4947 0.22 -0.6
5,703,070 - Pf6N2E2_4947 0.22 +1.3
5,703,085 + Pf6N2E2_4947 0.24 +1.7
5,703,085 + Pf6N2E2_4947 0.24 +1.7
5,703,085 + Pf6N2E2_4947 0.24 +1.3
5,703,086 - Pf6N2E2_4947 0.24 -1.0
5,703,127 + Pf6N2E2_4947 0.30 -1.5
5,703,127 + Pf6N2E2_4947 0.30 -0.0
5,703,373 + Pf6N2E2_4947 0.65 -1.1
5,703,374 - Pf6N2E2_4947 0.65 -0.6
5,703,374 - Pf6N2E2_4947 0.65 +0.5
5,703,391 + Pf6N2E2_4947 0.68 +0.7
5,703,391 + Pf6N2E2_4947 0.68 -1.1
5,703,496 + Pf6N2E2_4947 0.82 -1.5
5,703,496 + Pf6N2E2_4947 0.82 -1.9
5,703,496 + Pf6N2E2_4947 0.82 +0.9
5,703,496 + Pf6N2E2_4947 0.82 +1.0
5,703,496 + Pf6N2E2_4947 0.82 -0.6
5,703,496 + Pf6N2E2_4947 0.82 +1.1
5,703,496 + Pf6N2E2_4947 0.82 +0.6
5,703,496 + Pf6N2E2_4947 0.82 -0.8
5,703,496 + Pf6N2E2_4947 0.82 +1.2
5,703,497 - Pf6N2E2_4947 0.83 +0.8
5,703,497 - Pf6N2E2_4947 0.83 -1.1
5,703,739 + -0.9
5,703,742 + -0.3
5,703,743 - -1.9
5,703,743 - +0.8
5,703,743 - +0.4
5,703,743 - -2.0
5,703,804 + Pf6N2E2_4948 0.15 +0.5
5,703,804 + Pf6N2E2_4948 0.15 +0.6
5,703,804 + Pf6N2E2_4948 0.15 -2.4
5,703,804 + Pf6N2E2_4948 0.15 +1.1
5,703,804 + Pf6N2E2_4948 0.15 -0.9
5,703,804 + Pf6N2E2_4948 0.15 -1.9
5,703,804 + Pf6N2E2_4948 0.15 -2.3
5,703,804 + Pf6N2E2_4948 0.15 -0.8
5,703,804 + Pf6N2E2_4948 0.15 -1.6
5,703,804 + Pf6N2E2_4948 0.15 +1.5
5,703,804 + Pf6N2E2_4948 0.15 -2.0
5,703,804 + Pf6N2E2_4948 0.15 +0.9
5,703,804 + Pf6N2E2_4948 0.15 +1.3
5,703,805 - Pf6N2E2_4948 0.15 -2.7
5,703,805 - Pf6N2E2_4948 0.15 -0.7
5,703,805 - Pf6N2E2_4948 0.15 -1.8
5,703,805 - Pf6N2E2_4948 0.15 +0.1
5,703,805 - Pf6N2E2_4948 0.15 +1.3
5,703,805 - Pf6N2E2_4948 0.15 -2.4
5,703,805 - Pf6N2E2_4948 0.15 +0.6
5,703,805 - Pf6N2E2_4948 0.15 +0.3
5,703,805 - Pf6N2E2_4948 0.15 -1.9
5,703,805 - Pf6N2E2_4948 0.15 -0.8
5,703,925 + Pf6N2E2_4948 0.25 +0.1
5,703,925 + Pf6N2E2_4948 0.25 -0.1
5,703,926 - Pf6N2E2_4948 0.25 +0.5
5,703,947 - Pf6N2E2_4948 0.27 +0.2
5,703,985 + Pf6N2E2_4948 0.31 -0.5
5,703,985 + Pf6N2E2_4948 0.31 +0.5
5,703,985 + Pf6N2E2_4948 0.31 -0.5
5,703,986 - Pf6N2E2_4948 0.31 -0.1
5,703,986 - Pf6N2E2_4948 0.31 +0.5
5,704,006 + Pf6N2E2_4948 0.32 -1.9
5,704,007 - Pf6N2E2_4948 0.32 +0.9
5,704,007 - Pf6N2E2_4948 0.32 -0.3
5,704,007 - Pf6N2E2_4948 0.32 +1.1
5,704,007 - Pf6N2E2_4948 0.32 +0.4
5,704,148 - Pf6N2E2_4948 0.45 -0.1
5,704,148 - Pf6N2E2_4948 0.45 -0.4
5,704,195 + Pf6N2E2_4948 0.49 +0.2
5,704,195 + Pf6N2E2_4948 0.49 +1.1
5,704,195 + Pf6N2E2_4948 0.49 -0.7
5,704,195 + Pf6N2E2_4948 0.49 -2.5
5,704,196 - Pf6N2E2_4948 0.49 -0.4
5,704,196 - Pf6N2E2_4948 0.49 -0.6
5,704,380 + Pf6N2E2_4948 0.65 +1.8
5,704,381 - Pf6N2E2_4948 0.65 +0.0
5,704,592 + Pf6N2E2_4948 0.83 +1.2
5,704,592 + Pf6N2E2_4948 0.83 +0.5
5,704,592 + Pf6N2E2_4948 0.83 -0.1
5,704,592 + Pf6N2E2_4948 0.83 +2.5
5,704,592 + Pf6N2E2_4948 0.83 +1.6
5,704,593 - Pf6N2E2_4948 0.83 -0.7
5,704,610 - Pf6N2E2_4948 0.85 -1.7

Or see this region's nucleotide sequence