Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4820 and Pf6N2E2_4821 overlap by 4 nucleotides Pf6N2E2_4821 and Pf6N2E2_4822 are separated by 70 nucleotides Pf6N2E2_4822 and Pf6N2E2_4823 are separated by 126 nucleotides
Pf6N2E2_4820 - Ribulose-phosphate 3-epimerase (EC 5.1.3.1), at 5,573,725 to 5,574,399
_4820
Pf6N2E2_4821 - Phosphoglycolate phosphatase (EC 3.1.3.18), at 5,574,396 to 5,575,214
_4821
Pf6N2E2_4822 - Anthranilate synthase, aminase component (EC 4.1.3.27), at 5,575,285 to 5,576,766
_4822
Pf6N2E2_4823 - Phospholipase/lecithinase/hemolysin, at 5,576,893 to 5,578,866
_4823
Position (kb) 5575
5576
5577 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5574.550 kb on + strand, within Pf6N2E2_4821 at 5574.764 kb on + strand, within Pf6N2E2_4821 at 5574.764 kb on + strand, within Pf6N2E2_4821 at 5574.765 kb on - strand, within Pf6N2E2_4821 at 5574.765 kb on - strand, within Pf6N2E2_4821 at 5574.848 kb on + strand, within Pf6N2E2_4821 at 5574.999 kb on + strand, within Pf6N2E2_4821 at 5575.006 kb on - strand, within Pf6N2E2_4821 at 5575.069 kb on + strand, within Pf6N2E2_4821 at 5575.069 kb on + strand, within Pf6N2E2_4821 at 5575.069 kb on + strand, within Pf6N2E2_4821 at 5575.070 kb on - strand, within Pf6N2E2_4821 at 5575.102 kb on + strand, within Pf6N2E2_4821 at 5575.102 kb on + strand, within Pf6N2E2_4821 at 5575.102 kb on + strand, within Pf6N2E2_4821 at 5575.103 kb on - strand, within Pf6N2E2_4821 at 5575.103 kb on - strand, within Pf6N2E2_4821 at 5575.103 kb on - strand, within Pf6N2E2_4821 at 5575.103 kb on - strand, within Pf6N2E2_4821 at 5575.103 kb on - strand, within Pf6N2E2_4821 at 5575.248 kb on + strand at 5575.248 kb on + strand at 5575.249 kb on - strand at 5575.249 kb on - strand at 5575.324 kb on + strand at 5575.325 kb on - strand at 5575.385 kb on - strand at 5575.385 kb on - strand at 5575.414 kb on + strand at 5575.414 kb on + strand at 5575.414 kb on + strand at 5575.414 kb on + strand at 5575.414 kb on + strand at 5575.414 kb on + strand at 5575.414 kb on + strand at 5575.414 kb on + strand at 5575.415 kb on - strand at 5575.415 kb on - strand at 5575.456 kb on + strand, within Pf6N2E2_4822 at 5575.594 kb on + strand, within Pf6N2E2_4822 at 5575.594 kb on + strand, within Pf6N2E2_4822 at 5575.648 kb on + strand, within Pf6N2E2_4822 at 5575.673 kb on - strand, within Pf6N2E2_4822 at 5575.673 kb on - strand, within Pf6N2E2_4822 at 5575.729 kb on - strand, within Pf6N2E2_4822 at 5575.826 kb on - strand, within Pf6N2E2_4822 at 5575.826 kb on - strand, within Pf6N2E2_4822 at 5575.868 kb on + strand, within Pf6N2E2_4822 at 5575.960 kb on + strand, within Pf6N2E2_4822 at 5575.960 kb on + strand, within Pf6N2E2_4822 at 5575.990 kb on + strand, within Pf6N2E2_4822 at 5575.990 kb on + strand, within Pf6N2E2_4822 at 5575.990 kb on + strand, within Pf6N2E2_4822 at 5575.990 kb on + strand, within Pf6N2E2_4822 at 5575.990 kb on + strand, within Pf6N2E2_4822 at 5575.990 kb on + strand, within Pf6N2E2_4822 at 5575.990 kb on + strand, within Pf6N2E2_4822 at 5575.990 kb on + strand, within Pf6N2E2_4822 at 5575.990 kb on + strand, within Pf6N2E2_4822 at 5575.991 kb on - strand, within Pf6N2E2_4822 at 5575.991 kb on - strand, within Pf6N2E2_4822 at 5575.991 kb on - strand, within Pf6N2E2_4822 at 5576.018 kb on + strand, within Pf6N2E2_4822 at 5576.018 kb on + strand, within Pf6N2E2_4822 at 5576.019 kb on - strand, within Pf6N2E2_4822 at 5576.019 kb on - strand, within Pf6N2E2_4822 at 5576.104 kb on + strand, within Pf6N2E2_4822 at 5576.104 kb on + strand, within Pf6N2E2_4822 at 5576.104 kb on + strand, within Pf6N2E2_4822 at 5576.104 kb on + strand, within Pf6N2E2_4822 at 5576.104 kb on + strand, within Pf6N2E2_4822 at 5576.104 kb on + strand, within Pf6N2E2_4822 at 5576.105 kb on - strand, within Pf6N2E2_4822 at 5576.105 kb on - strand, within Pf6N2E2_4822 at 5576.105 kb on - strand, within Pf6N2E2_4822 at 5576.105 kb on - strand, within Pf6N2E2_4822 at 5576.105 kb on - strand, within Pf6N2E2_4822 at 5576.105 kb on - strand, within Pf6N2E2_4822 at 5576.105 kb on - strand, within Pf6N2E2_4822 at 5576.105 kb on - strand, within Pf6N2E2_4822 at 5576.105 kb on - strand, within Pf6N2E2_4822 at 5576.110 kb on + strand, within Pf6N2E2_4822 at 5576.110 kb on + strand, within Pf6N2E2_4822 at 5576.110 kb on + strand, within Pf6N2E2_4822 at 5576.110 kb on + strand, within Pf6N2E2_4822 at 5576.110 kb on + strand, within Pf6N2E2_4822 at 5576.110 kb on + strand, within Pf6N2E2_4822 at 5576.110 kb on + strand, within Pf6N2E2_4822 at 5576.110 kb on + strand, within Pf6N2E2_4822 at 5576.110 kb on + strand, within Pf6N2E2_4822 at 5576.111 kb on - strand, within Pf6N2E2_4822 at 5576.111 kb on - strand, within Pf6N2E2_4822 at 5576.111 kb on - strand, within Pf6N2E2_4822 at 5576.111 kb on - strand, within Pf6N2E2_4822 at 5576.111 kb on - strand, within Pf6N2E2_4822 at 5576.111 kb on - strand, within Pf6N2E2_4822 at 5576.111 kb on - strand, within Pf6N2E2_4822 at 5576.111 kb on - strand, within Pf6N2E2_4822 at 5576.111 kb on - strand, within Pf6N2E2_4822 at 5576.551 kb on + strand, within Pf6N2E2_4822 at 5576.569 kb on + strand, within Pf6N2E2_4822 at 5576.645 kb on + strand at 5576.645 kb on + strand at 5576.645 kb on + strand at 5576.645 kb on + strand at 5576.645 kb on + strand at 5576.646 kb on - strand at 5576.646 kb on - strand at 5576.661 kb on + strand at 5576.826 kb on + strand at 5576.826 kb on + strand at 5576.826 kb on + strand at 5576.827 kb on - strand at 5576.921 kb on - strand at 5576.921 kb on - strand at 5576.921 kb on - strand at 5576.958 kb on + strand at 5576.958 kb on + strand at 5576.958 kb on + strand at 5576.958 kb on + strand at 5576.958 kb on + strand at 5576.958 kb on + strand at 5576.958 kb on + strand at 5576.958 kb on + strand at 5576.958 kb on + strand at 5576.959 kb on - strand at 5576.959 kb on - strand at 5576.959 kb on - strand at 5576.959 kb on - strand at 5576.959 kb on - strand at 5576.959 kb on - strand at 5576.959 kb on - strand at 5576.959 kb on - strand at 5576.959 kb on - strand at 5576.959 kb on - strand at 5576.960 kb on + strand at 5576.977 kb on + strand at 5576.977 kb on + strand at 5576.977 kb on + strand at 5576.977 kb on + strand at 5576.977 kb on + strand at 5576.978 kb on - strand at 5576.978 kb on - strand at 5576.978 kb on - strand at 5577.022 kb on - strand at 5577.022 kb on - strand at 5577.042 kb on - strand at 5577.131 kb on + strand, within Pf6N2E2_4823 at 5577.132 kb on - strand, within Pf6N2E2_4823 at 5577.132 kb on - strand, within Pf6N2E2_4823 at 5577.167 kb on + strand, within Pf6N2E2_4823 at 5577.168 kb on - strand, within Pf6N2E2_4823 at 5577.168 kb on - strand, within Pf6N2E2_4823 at 5577.168 kb on - strand, within Pf6N2E2_4823 at 5577.168 kb on - strand, within Pf6N2E2_4823 at 5577.168 kb on - strand, within Pf6N2E2_4823 at 5577.168 kb on - strand, within Pf6N2E2_4823 at 5577.281 kb on + strand, within Pf6N2E2_4823 at 5577.282 kb on - strand, within Pf6N2E2_4823 at 5577.354 kb on + strand, within Pf6N2E2_4823 at 5577.354 kb on + strand, within Pf6N2E2_4823 at 5577.354 kb on + strand, within Pf6N2E2_4823 at 5577.515 kb on + strand, within Pf6N2E2_4823 at 5577.515 kb on + strand, within Pf6N2E2_4823 at 5577.515 kb on + strand, within Pf6N2E2_4823 at 5577.515 kb on + strand, within Pf6N2E2_4823 at 5577.515 kb on + strand, within Pf6N2E2_4823 at 5577.516 kb on - strand, within Pf6N2E2_4823 at 5577.516 kb on - strand, within Pf6N2E2_4823 at 5577.516 kb on - strand, within Pf6N2E2_4823 at 5577.516 kb on - strand, within Pf6N2E2_4823 at 5577.519 kb on + strand, within Pf6N2E2_4823 at 5577.519 kb on + strand, within Pf6N2E2_4823 at 5577.520 kb on - strand, within Pf6N2E2_4823 at 5577.520 kb on - strand, within Pf6N2E2_4823 at 5577.520 kb on - strand, within Pf6N2E2_4823 at 5577.520 kb on - strand, within Pf6N2E2_4823 at 5577.520 kb on - strand, within Pf6N2E2_4823 at 5577.520 kb on - strand, within Pf6N2E2_4823 at 5577.520 kb on - strand, within Pf6N2E2_4823 at 5577.530 kb on + strand, within Pf6N2E2_4823 at 5577.531 kb on - strand, within Pf6N2E2_4823 at 5577.531 kb on - strand, within Pf6N2E2_4823 at 5577.589 kb on + strand, within Pf6N2E2_4823 at 5577.589 kb on + strand, within Pf6N2E2_4823 at 5577.589 kb on + strand, within Pf6N2E2_4823 at 5577.590 kb on - strand, within Pf6N2E2_4823 at 5577.590 kb on - strand, within Pf6N2E2_4823 at 5577.590 kb on - strand, within Pf6N2E2_4823 at 5577.590 kb on - strand, within Pf6N2E2_4823
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 5,574,550 + Pf6N2E2_4821 0.19 -0.8 5,574,764 + Pf6N2E2_4821 0.45 +1.4 5,574,764 + Pf6N2E2_4821 0.45 +0.1 5,574,765 - Pf6N2E2_4821 0.45 +2.5 5,574,765 - Pf6N2E2_4821 0.45 +1.5 5,574,848 + Pf6N2E2_4821 0.55 +1.2 5,574,999 + Pf6N2E2_4821 0.74 -0.1 5,575,006 - Pf6N2E2_4821 0.74 +0.5 5,575,069 + Pf6N2E2_4821 0.82 +0.5 5,575,069 + Pf6N2E2_4821 0.82 +0.9 5,575,069 + Pf6N2E2_4821 0.82 -0.5 5,575,070 - Pf6N2E2_4821 0.82 -0.1 5,575,102 + Pf6N2E2_4821 0.86 -1.8 5,575,102 + Pf6N2E2_4821 0.86 +0.8 5,575,102 + Pf6N2E2_4821 0.86 -0.5 5,575,103 - Pf6N2E2_4821 0.86 -0.5 5,575,103 - Pf6N2E2_4821 0.86 +0.6 5,575,103 - Pf6N2E2_4821 0.86 -1.5 5,575,103 - Pf6N2E2_4821 0.86 -0.7 5,575,103 - Pf6N2E2_4821 0.86 +0.1 5,575,248 + +0.1 5,575,248 + -0.9 5,575,249 - -0.2 5,575,249 - +0.5 5,575,324 + +1.9 5,575,325 - +0.1 5,575,385 - +1.5 5,575,385 - -0.6 5,575,414 + +0.8 5,575,414 + +0.5 5,575,414 + +0.7 5,575,414 + -0.0 5,575,414 + +0.5 5,575,414 + -1.4 5,575,414 + +2.8 5,575,414 + -1.1 5,575,415 - -1.5 5,575,415 - +1.1 5,575,456 + Pf6N2E2_4822 0.12 -0.4 5,575,594 + Pf6N2E2_4822 0.21 +0.9 5,575,594 + Pf6N2E2_4822 0.21 +0.1 5,575,648 + Pf6N2E2_4822 0.24 -0.9 5,575,673 - Pf6N2E2_4822 0.26 +1.5 5,575,673 - Pf6N2E2_4822 0.26 +0.9 5,575,729 - Pf6N2E2_4822 0.30 +1.0 5,575,826 - Pf6N2E2_4822 0.37 -0.2 5,575,826 - Pf6N2E2_4822 0.37 -0.4 5,575,868 + Pf6N2E2_4822 0.39 -0.9 5,575,960 + Pf6N2E2_4822 0.46 -1.4 5,575,960 + Pf6N2E2_4822 0.46 -2.1 5,575,990 + Pf6N2E2_4822 0.48 +1.9 5,575,990 + Pf6N2E2_4822 0.48 +0.2 5,575,990 + Pf6N2E2_4822 0.48 +1.6 5,575,990 + Pf6N2E2_4822 0.48 +0.3 5,575,990 + Pf6N2E2_4822 0.48 +0.0 5,575,990 + Pf6N2E2_4822 0.48 +0.8 5,575,990 + Pf6N2E2_4822 0.48 -0.4 5,575,990 + Pf6N2E2_4822 0.48 -1.5 5,575,990 + Pf6N2E2_4822 0.48 +1.2 5,575,991 - Pf6N2E2_4822 0.48 -1.3 5,575,991 - Pf6N2E2_4822 0.48 +0.5 5,575,991 - Pf6N2E2_4822 0.48 +1.0 5,576,018 + Pf6N2E2_4822 0.49 -0.6 5,576,018 + Pf6N2E2_4822 0.49 +0.1 5,576,019 - Pf6N2E2_4822 0.50 +0.5 5,576,019 - Pf6N2E2_4822 0.50 +0.0 5,576,104 + Pf6N2E2_4822 0.55 -1.8 5,576,104 + Pf6N2E2_4822 0.55 +0.6 5,576,104 + Pf6N2E2_4822 0.55 -0.6 5,576,104 + Pf6N2E2_4822 0.55 +0.9 5,576,104 + Pf6N2E2_4822 0.55 +0.5 5,576,104 + Pf6N2E2_4822 0.55 +1.1 5,576,105 - Pf6N2E2_4822 0.55 -0.9 5,576,105 - Pf6N2E2_4822 0.55 -2.7 5,576,105 - Pf6N2E2_4822 0.55 +2.0 5,576,105 - Pf6N2E2_4822 0.55 +1.0 5,576,105 - Pf6N2E2_4822 0.55 +1.1 5,576,105 - Pf6N2E2_4822 0.55 +1.6 5,576,105 - Pf6N2E2_4822 0.55 +2.5 5,576,105 - Pf6N2E2_4822 0.55 -3.1 5,576,105 - Pf6N2E2_4822 0.55 +1.8 5,576,110 + Pf6N2E2_4822 0.56 -0.1 5,576,110 + Pf6N2E2_4822 0.56 +0.2 5,576,110 + Pf6N2E2_4822 0.56 +0.1 5,576,110 + Pf6N2E2_4822 0.56 +1.0 5,576,110 + Pf6N2E2_4822 0.56 -0.3 5,576,110 + Pf6N2E2_4822 0.56 +0.2 5,576,110 + Pf6N2E2_4822 0.56 -2.1 5,576,110 + Pf6N2E2_4822 0.56 +0.1 5,576,110 + Pf6N2E2_4822 0.56 +0.2 5,576,111 - Pf6N2E2_4822 0.56 +0.1 5,576,111 - Pf6N2E2_4822 0.56 +0.9 5,576,111 - Pf6N2E2_4822 0.56 -0.2 5,576,111 - Pf6N2E2_4822 0.56 +0.9 5,576,111 - Pf6N2E2_4822 0.56 -0.5 5,576,111 - Pf6N2E2_4822 0.56 +0.0 5,576,111 - Pf6N2E2_4822 0.56 -1.1 5,576,111 - Pf6N2E2_4822 0.56 -1.3 5,576,111 - Pf6N2E2_4822 0.56 -0.8 5,576,551 + Pf6N2E2_4822 0.85 -0.5 5,576,569 + Pf6N2E2_4822 0.87 -0.4 5,576,645 + +0.5 5,576,645 + -0.4 5,576,645 + -0.1 5,576,645 + -0.1 5,576,645 + -1.3 5,576,646 - +0.5 5,576,646 - -0.1 5,576,661 + -0.4 5,576,826 + +0.9 5,576,826 + -2.6 5,576,826 + +0.4 5,576,827 - +1.9 5,576,921 - -0.6 5,576,921 - +0.3 5,576,921 - +0.1 5,576,958 + +0.6 5,576,958 + -0.9 5,576,958 + +0.1 5,576,958 + +2.3 5,576,958 + +1.7 5,576,958 + +0.2 5,576,958 + -0.9 5,576,958 + +0.3 5,576,958 + +0.3 5,576,959 - +0.7 5,576,959 - +0.3 5,576,959 - +1.3 5,576,959 - +0.4 5,576,959 - +0.6 5,576,959 - +0.9 5,576,959 - -2.9 5,576,959 - +0.3 5,576,959 - +0.9 5,576,959 - -0.5 5,576,960 + -1.7 5,576,977 + -0.7 5,576,977 + -0.5 5,576,977 + -0.3 5,576,977 + +0.9 5,576,977 + +0.0 5,576,978 - +1.5 5,576,978 - +1.3 5,576,978 - -0.8 5,577,022 - -0.4 5,577,022 - -0.2 5,577,042 - -0.2 5,577,131 + Pf6N2E2_4823 0.12 +0.2 5,577,132 - Pf6N2E2_4823 0.12 -1.7 5,577,132 - Pf6N2E2_4823 0.12 -2.1 5,577,167 + Pf6N2E2_4823 0.14 +0.8 5,577,168 - Pf6N2E2_4823 0.14 -1.3 5,577,168 - Pf6N2E2_4823 0.14 -1.4 5,577,168 - Pf6N2E2_4823 0.14 -1.2 5,577,168 - Pf6N2E2_4823 0.14 +1.4 5,577,168 - Pf6N2E2_4823 0.14 +0.7 5,577,168 - Pf6N2E2_4823 0.14 +1.9 5,577,281 + Pf6N2E2_4823 0.20 +1.5 5,577,282 - Pf6N2E2_4823 0.20 -0.5 5,577,354 + Pf6N2E2_4823 0.23 +0.2 5,577,354 + Pf6N2E2_4823 0.23 -1.3 5,577,354 + Pf6N2E2_4823 0.23 +1.0 5,577,515 + Pf6N2E2_4823 0.32 -0.2 5,577,515 + Pf6N2E2_4823 0.32 +0.3 5,577,515 + Pf6N2E2_4823 0.32 -1.1 5,577,515 + Pf6N2E2_4823 0.32 -0.7 5,577,515 + Pf6N2E2_4823 0.32 -0.0 5,577,516 - Pf6N2E2_4823 0.32 +1.1 5,577,516 - Pf6N2E2_4823 0.32 +1.7 5,577,516 - Pf6N2E2_4823 0.32 +0.8 5,577,516 - Pf6N2E2_4823 0.32 +0.9 5,577,519 + Pf6N2E2_4823 0.32 -3.0 5,577,519 + Pf6N2E2_4823 0.32 +1.3 5,577,520 - Pf6N2E2_4823 0.32 -2.3 5,577,520 - Pf6N2E2_4823 0.32 -0.9 5,577,520 - Pf6N2E2_4823 0.32 -1.8 5,577,520 - Pf6N2E2_4823 0.32 +0.7 5,577,520 - Pf6N2E2_4823 0.32 +2.2 5,577,520 - Pf6N2E2_4823 0.32 -1.8 5,577,520 - Pf6N2E2_4823 0.32 -0.9 5,577,530 + Pf6N2E2_4823 0.32 +0.1 5,577,531 - Pf6N2E2_4823 0.32 -1.3 5,577,531 - Pf6N2E2_4823 0.32 -2.2 5,577,589 + Pf6N2E2_4823 0.35 +1.2 5,577,589 + Pf6N2E2_4823 0.35 +0.2 5,577,589 + Pf6N2E2_4823 0.35 +0.1 5,577,590 - Pf6N2E2_4823 0.35 -0.7 5,577,590 - Pf6N2E2_4823 0.35 -0.8 5,577,590 - Pf6N2E2_4823 0.35 +0.2 5,577,590 - Pf6N2E2_4823 0.35 +0.2
Or see this region's nucleotide sequence