Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3946

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3944 and Pf6N2E2_3945 are separated by 68 nucleotidesPf6N2E2_3945 and Pf6N2E2_3946 are separated by 49 nucleotidesPf6N2E2_3946 and Pf6N2E2_3947 are separated by 115 nucleotidesPf6N2E2_3947 and Pf6N2E2_3948 are separated by 86 nucleotides Pf6N2E2_3944 - Protein of unknown function DUF81, at 4,581,868 to 4,582,668 _3944 Pf6N2E2_3945 - Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-), at 4,582,737 to 4,583,546 _3945 Pf6N2E2_3946 - Thymidylate synthase (EC 2.1.1.45), at 4,583,596 to 4,584,567 _3946 Pf6N2E2_3947 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 4,584,683 to 4,585,129 _3947 Pf6N2E2_3948 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 4,585,216 to 4,587,435 _3948 Position (kb) 4583 4584 4585Strain fitness (log2 ratio) -2 -1 0 1 2at 4582.637 kb on + strandat 4582.637 kb on + strandat 4582.637 kb on + strandat 4582.637 kb on + strandat 4582.637 kb on + strandat 4582.682 kb on + strandat 4582.723 kb on + strandat 4583.511 kb on + strandat 4583.511 kb on + strandat 4585.024 kb on - strand, within Pf6N2E2_3947at 4585.071 kb on + strand, within Pf6N2E2_3947at 4585.074 kb on + strand, within Pf6N2E2_3947at 4585.146 kb on + strandat 4585.146 kb on + strandat 4585.146 kb on + strandat 4585.146 kb on + strandat 4585.146 kb on + strandat 4585.146 kb on + strandat 4585.147 kb on - strandat 4585.147 kb on - strandat 4585.147 kb on - strandat 4585.147 kb on - strandat 4585.147 kb on - strandat 4585.147 kb on - strandat 4585.147 kb on - strandat 4585.147 kb on - strandat 4585.180 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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4,582,637 + -0.9
4,582,637 + -1.4
4,582,637 + +1.3
4,582,637 + +0.0
4,582,637 + +0.9
4,582,682 + -0.2
4,582,723 + -1.7
4,583,511 + -1.3
4,583,511 + -0.3
4,585,024 - Pf6N2E2_3947 0.76 -0.9
4,585,071 + Pf6N2E2_3947 0.87 -0.2
4,585,074 + Pf6N2E2_3947 0.87 -1.2
4,585,146 + -1.9
4,585,146 + +0.1
4,585,146 + +2.3
4,585,146 + -0.0
4,585,146 + -1.2
4,585,146 + +0.2
4,585,147 - +0.0
4,585,147 - -0.1
4,585,147 - +0.7
4,585,147 - -1.5
4,585,147 - -0.9
4,585,147 - +0.7
4,585,147 - +0.8
4,585,147 - -1.2
4,585,180 + -0.8

Or see this region's nucleotide sequence