Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2807

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2806 and Pf6N2E2_2807 are separated by 294 nucleotidesPf6N2E2_2807 and Pf6N2E2_2808 overlap by 1 nucleotidesPf6N2E2_2808 and Pf6N2E2_2809 are separated by 252 nucleotides Pf6N2E2_2806 - Methyltransferase (EC 2.1.1.-), at 3,291,964 to 3,293,181 _2806 Pf6N2E2_2807 - FIG126011: Hypothetical protein, at 3,293,476 to 3,294,945 _2807 Pf6N2E2_2808 - LemA family protein, at 3,294,945 to 3,295,553 _2808 Pf6N2E2_2809 - Periplasmic beta-glucosidase (EC 3.2.1.21), at 3,295,806 to 3,298,097 _2809 Position (kb) 3293 3294 3295Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3292.545 kb on - strand, within Pf6N2E2_2806at 3292.545 kb on - strand, within Pf6N2E2_2806at 3292.568 kb on + strand, within Pf6N2E2_2806at 3292.853 kb on + strand, within Pf6N2E2_2806at 3292.853 kb on + strand, within Pf6N2E2_2806at 3292.979 kb on + strand, within Pf6N2E2_2806at 3293.062 kb on + strandat 3293.062 kb on + strandat 3293.063 kb on - strandat 3293.066 kb on + strandat 3293.066 kb on + strandat 3293.066 kb on + strandat 3293.066 kb on + strandat 3293.066 kb on + strandat 3293.067 kb on - strandat 3293.067 kb on - strandat 3293.067 kb on - strandat 3293.067 kb on - strandat 3293.067 kb on - strandat 3293.067 kb on - strandat 3293.224 kb on - strandat 3293.229 kb on - strandat 3293.477 kb on + strandat 3293.496 kb on + strandat 3293.496 kb on + strandat 3293.496 kb on + strandat 3293.496 kb on + strandat 3293.496 kb on + strandat 3293.497 kb on - strandat 3293.690 kb on + strand, within Pf6N2E2_2807at 3293.918 kb on + strand, within Pf6N2E2_2807at 3293.919 kb on - strand, within Pf6N2E2_2807at 3293.973 kb on + strand, within Pf6N2E2_2807at 3293.975 kb on + strand, within Pf6N2E2_2807at 3293.975 kb on + strand, within Pf6N2E2_2807at 3293.975 kb on + strand, within Pf6N2E2_2807at 3293.975 kb on + strand, within Pf6N2E2_2807at 3293.975 kb on + strand, within Pf6N2E2_2807at 3293.975 kb on + strand, within Pf6N2E2_2807at 3293.976 kb on - strand, within Pf6N2E2_2807at 3293.976 kb on - strand, within Pf6N2E2_2807at 3293.976 kb on - strand, within Pf6N2E2_2807at 3293.976 kb on - strand, within Pf6N2E2_2807at 3293.976 kb on - strand, within Pf6N2E2_2807at 3293.976 kb on - strand, within Pf6N2E2_2807at 3293.976 kb on - strand, within Pf6N2E2_2807at 3293.976 kb on - strand, within Pf6N2E2_2807at 3293.976 kb on - strand, within Pf6N2E2_2807at 3293.976 kb on - strand, within Pf6N2E2_2807at 3293.976 kb on - strand, within Pf6N2E2_2807at 3293.976 kb on - strand, within Pf6N2E2_2807at 3293.982 kb on - strand, within Pf6N2E2_2807at 3293.982 kb on - strand, within Pf6N2E2_2807at 3294.098 kb on - strand, within Pf6N2E2_2807at 3294.114 kb on + strand, within Pf6N2E2_2807at 3294.115 kb on - strand, within Pf6N2E2_2807at 3294.118 kb on - strand, within Pf6N2E2_2807at 3294.118 kb on - strand, within Pf6N2E2_2807at 3294.118 kb on - strand, within Pf6N2E2_2807at 3294.118 kb on - strand, within Pf6N2E2_2807at 3294.275 kb on - strand, within Pf6N2E2_2807at 3294.286 kb on - strand, within Pf6N2E2_2807at 3294.293 kb on - strand, within Pf6N2E2_2807at 3294.552 kb on + strand, within Pf6N2E2_2807at 3294.553 kb on - strand, within Pf6N2E2_2807at 3294.553 kb on - strand, within Pf6N2E2_2807at 3294.901 kb on + strandat 3294.902 kb on - strandat 3294.902 kb on - strandat 3294.902 kb on - strandat 3294.902 kb on - strandat 3294.920 kb on + strandat 3294.920 kb on + strandat 3294.920 kb on + strandat 3294.920 kb on + strandat 3294.921 kb on - strandat 3294.921 kb on - strandat 3294.921 kb on - strandat 3294.934 kb on + strandat 3294.934 kb on + strandat 3295.021 kb on + strand, within Pf6N2E2_2808at 3295.021 kb on + strand, within Pf6N2E2_2808at 3295.022 kb on - strand, within Pf6N2E2_2808at 3295.022 kb on - strand, within Pf6N2E2_2808at 3295.072 kb on + strand, within Pf6N2E2_2808at 3295.072 kb on + strand, within Pf6N2E2_2808at 3295.072 kb on + strand, within Pf6N2E2_2808at 3295.073 kb on - strand, within Pf6N2E2_2808at 3295.073 kb on - strand, within Pf6N2E2_2808at 3295.073 kb on - strand, within Pf6N2E2_2808at 3295.073 kb on - strand, within Pf6N2E2_2808at 3295.073 kb on - strand, within Pf6N2E2_2808at 3295.409 kb on - strand, within Pf6N2E2_2808at 3295.409 kb on - strand, within Pf6N2E2_2808at 3295.599 kb on + strandat 3295.599 kb on + strandat 3295.599 kb on + strandat 3295.600 kb on - strandat 3295.600 kb on - strandat 3295.600 kb on - strandat 3295.600 kb on - strandat 3295.600 kb on - strandat 3295.622 kb on - strandat 3295.622 kb on - strandat 3295.682 kb on + strandat 3295.682 kb on + strandat 3295.682 kb on + strandat 3295.683 kb on - strandat 3295.683 kb on - strandat 3295.744 kb on + strandat 3295.745 kb on - strandat 3295.745 kb on - strandat 3295.746 kb on + strandat 3295.746 kb on + strandat 3295.746 kb on + strandat 3295.747 kb on - strandat 3295.747 kb on - strandat 3295.747 kb on - strandat 3295.785 kb on - strandat 3295.801 kb on + strandat 3295.859 kb on - strandat 3295.885 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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3,292,545 - Pf6N2E2_2806 0.48 +1.8
3,292,545 - Pf6N2E2_2806 0.48 +1.7
3,292,568 + Pf6N2E2_2806 0.50 +0.7
3,292,853 + Pf6N2E2_2806 0.73 -0.9
3,292,853 + Pf6N2E2_2806 0.73 +1.0
3,292,979 + Pf6N2E2_2806 0.83 +0.6
3,293,062 + -0.5
3,293,062 + -1.6
3,293,063 - +0.4
3,293,066 + -2.3
3,293,066 + -0.3
3,293,066 + -0.1
3,293,066 + +0.3
3,293,066 + +0.5
3,293,067 - -0.6
3,293,067 - -0.1
3,293,067 - -0.5
3,293,067 - +0.1
3,293,067 - -0.9
3,293,067 - -1.9
3,293,224 - -0.7
3,293,229 - -1.3
3,293,477 + +3.1
3,293,496 + +0.7
3,293,496 + +0.9
3,293,496 + +0.3
3,293,496 + -2.2
3,293,496 + +2.1
3,293,497 - +0.0
3,293,690 + Pf6N2E2_2807 0.15 -1.0
3,293,918 + Pf6N2E2_2807 0.30 -0.3
3,293,919 - Pf6N2E2_2807 0.30 +0.5
3,293,973 + Pf6N2E2_2807 0.34 -1.3
3,293,975 + Pf6N2E2_2807 0.34 -0.3
3,293,975 + Pf6N2E2_2807 0.34 +0.4
3,293,975 + Pf6N2E2_2807 0.34 -2.4
3,293,975 + Pf6N2E2_2807 0.34 +1.1
3,293,975 + Pf6N2E2_2807 0.34 -0.4
3,293,975 + Pf6N2E2_2807 0.34 -2.3
3,293,976 - Pf6N2E2_2807 0.34 -0.1
3,293,976 - Pf6N2E2_2807 0.34 +0.1
3,293,976 - Pf6N2E2_2807 0.34 +1.3
3,293,976 - Pf6N2E2_2807 0.34 +0.9
3,293,976 - Pf6N2E2_2807 0.34 +0.9
3,293,976 - Pf6N2E2_2807 0.34 +0.5
3,293,976 - Pf6N2E2_2807 0.34 -0.3
3,293,976 - Pf6N2E2_2807 0.34 -2.2
3,293,976 - Pf6N2E2_2807 0.34 -0.6
3,293,976 - Pf6N2E2_2807 0.34 -1.1
3,293,976 - Pf6N2E2_2807 0.34 -0.3
3,293,976 - Pf6N2E2_2807 0.34 -0.1
3,293,982 - Pf6N2E2_2807 0.34 -1.3
3,293,982 - Pf6N2E2_2807 0.34 +2.0
3,294,098 - Pf6N2E2_2807 0.42 +0.5
3,294,114 + Pf6N2E2_2807 0.43 -0.9
3,294,115 - Pf6N2E2_2807 0.43 -0.6
3,294,118 - Pf6N2E2_2807 0.44 -0.9
3,294,118 - Pf6N2E2_2807 0.44 +1.2
3,294,118 - Pf6N2E2_2807 0.44 -0.3
3,294,118 - Pf6N2E2_2807 0.44 -1.7
3,294,275 - Pf6N2E2_2807 0.54 -2.2
3,294,286 - Pf6N2E2_2807 0.55 +0.9
3,294,293 - Pf6N2E2_2807 0.56 +1.7
3,294,552 + Pf6N2E2_2807 0.73 -0.9
3,294,553 - Pf6N2E2_2807 0.73 -0.5
3,294,553 - Pf6N2E2_2807 0.73 -0.7
3,294,901 + -1.7
3,294,902 - -0.6
3,294,902 - -0.3
3,294,902 - +1.1
3,294,902 - +0.5
3,294,920 + -1.6
3,294,920 + +0.8
3,294,920 + -1.9
3,294,920 + +0.1
3,294,921 - -0.5
3,294,921 - -1.1
3,294,921 - -2.2
3,294,934 + -0.1
3,294,934 + -1.3
3,295,021 + Pf6N2E2_2808 0.12 -0.2
3,295,021 + Pf6N2E2_2808 0.12 -2.3
3,295,022 - Pf6N2E2_2808 0.13 -1.2
3,295,022 - Pf6N2E2_2808 0.13 +1.7
3,295,072 + Pf6N2E2_2808 0.21 -2.0
3,295,072 + Pf6N2E2_2808 0.21 -0.6
3,295,072 + Pf6N2E2_2808 0.21 +2.1
3,295,073 - Pf6N2E2_2808 0.21 -0.1
3,295,073 - Pf6N2E2_2808 0.21 +1.0
3,295,073 - Pf6N2E2_2808 0.21 -1.5
3,295,073 - Pf6N2E2_2808 0.21 -0.6
3,295,073 - Pf6N2E2_2808 0.21 -1.3
3,295,409 - Pf6N2E2_2808 0.76 -1.6
3,295,409 - Pf6N2E2_2808 0.76 -0.2
3,295,599 + -0.3
3,295,599 + -0.0
3,295,599 + -0.1
3,295,600 - +2.0
3,295,600 - -0.1
3,295,600 - +1.1
3,295,600 - -0.7
3,295,600 - +1.2
3,295,622 - -0.1
3,295,622 - -2.0
3,295,682 + +1.7
3,295,682 + -0.4
3,295,682 + -0.5
3,295,683 - -1.0
3,295,683 - +1.3
3,295,744 + -1.2
3,295,745 - +0.7
3,295,745 - -0.9
3,295,746 + +0.5
3,295,746 + -0.3
3,295,746 + -0.8
3,295,747 - +0.2
3,295,747 - +1.3
3,295,747 - -0.0
3,295,785 - +0.1
3,295,801 + +0.1
3,295,859 - +2.8
3,295,885 + +0.9

Or see this region's nucleotide sequence