Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2806 and Pf6N2E2_2807 are separated by 294 nucleotides Pf6N2E2_2807 and Pf6N2E2_2808 overlap by 1 nucleotides Pf6N2E2_2808 and Pf6N2E2_2809 are separated by 252 nucleotides
Pf6N2E2_2806 - Methyltransferase (EC 2.1.1.-), at 3,291,964 to 3,293,181
_2806
Pf6N2E2_2807 - FIG126011: Hypothetical protein, at 3,293,476 to 3,294,945
_2807
Pf6N2E2_2808 - LemA family protein, at 3,294,945 to 3,295,553
_2808
Pf6N2E2_2809 - Periplasmic beta-glucosidase (EC 3.2.1.21), at 3,295,806 to 3,298,097
_2809
Position (kb)
3293
3294
3295 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3292.545 kb on - strand, within Pf6N2E2_2806 at 3292.545 kb on - strand, within Pf6N2E2_2806 at 3292.568 kb on + strand, within Pf6N2E2_2806 at 3292.853 kb on + strand, within Pf6N2E2_2806 at 3292.853 kb on + strand, within Pf6N2E2_2806 at 3292.979 kb on + strand, within Pf6N2E2_2806 at 3293.062 kb on + strand at 3293.062 kb on + strand at 3293.063 kb on - strand at 3293.066 kb on + strand at 3293.066 kb on + strand at 3293.066 kb on + strand at 3293.066 kb on + strand at 3293.066 kb on + strand at 3293.067 kb on - strand at 3293.067 kb on - strand at 3293.067 kb on - strand at 3293.067 kb on - strand at 3293.067 kb on - strand at 3293.067 kb on - strand at 3293.224 kb on - strand at 3293.229 kb on - strand at 3293.477 kb on + strand at 3293.496 kb on + strand at 3293.496 kb on + strand at 3293.496 kb on + strand at 3293.496 kb on + strand at 3293.496 kb on + strand at 3293.497 kb on - strand at 3293.690 kb on + strand, within Pf6N2E2_2807 at 3293.918 kb on + strand, within Pf6N2E2_2807 at 3293.919 kb on - strand, within Pf6N2E2_2807 at 3293.973 kb on + strand, within Pf6N2E2_2807 at 3293.975 kb on + strand, within Pf6N2E2_2807 at 3293.975 kb on + strand, within Pf6N2E2_2807 at 3293.975 kb on + strand, within Pf6N2E2_2807 at 3293.975 kb on + strand, within Pf6N2E2_2807 at 3293.975 kb on + strand, within Pf6N2E2_2807 at 3293.975 kb on + strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.982 kb on - strand, within Pf6N2E2_2807 at 3293.982 kb on - strand, within Pf6N2E2_2807 at 3294.098 kb on - strand, within Pf6N2E2_2807 at 3294.114 kb on + strand, within Pf6N2E2_2807 at 3294.115 kb on - strand, within Pf6N2E2_2807 at 3294.118 kb on - strand, within Pf6N2E2_2807 at 3294.118 kb on - strand, within Pf6N2E2_2807 at 3294.118 kb on - strand, within Pf6N2E2_2807 at 3294.118 kb on - strand, within Pf6N2E2_2807 at 3294.275 kb on - strand, within Pf6N2E2_2807 at 3294.286 kb on - strand, within Pf6N2E2_2807 at 3294.293 kb on - strand, within Pf6N2E2_2807 at 3294.552 kb on + strand, within Pf6N2E2_2807 at 3294.553 kb on - strand, within Pf6N2E2_2807 at 3294.553 kb on - strand, within Pf6N2E2_2807 at 3294.901 kb on + strand at 3294.902 kb on - strand at 3294.902 kb on - strand at 3294.902 kb on - strand at 3294.902 kb on - strand at 3294.920 kb on + strand at 3294.920 kb on + strand at 3294.920 kb on + strand at 3294.920 kb on + strand at 3294.921 kb on - strand at 3294.921 kb on - strand at 3294.921 kb on - strand at 3294.934 kb on + strand at 3294.934 kb on + strand at 3295.021 kb on + strand, within Pf6N2E2_2808 at 3295.021 kb on + strand, within Pf6N2E2_2808 at 3295.022 kb on - strand, within Pf6N2E2_2808 at 3295.022 kb on - strand, within Pf6N2E2_2808 at 3295.072 kb on + strand, within Pf6N2E2_2808 at 3295.072 kb on + strand, within Pf6N2E2_2808 at 3295.072 kb on + strand, within Pf6N2E2_2808 at 3295.073 kb on - strand, within Pf6N2E2_2808 at 3295.073 kb on - strand, within Pf6N2E2_2808 at 3295.073 kb on - strand, within Pf6N2E2_2808 at 3295.073 kb on - strand, within Pf6N2E2_2808 at 3295.073 kb on - strand, within Pf6N2E2_2808 at 3295.409 kb on - strand, within Pf6N2E2_2808 at 3295.409 kb on - strand, within Pf6N2E2_2808 at 3295.599 kb on + strand at 3295.599 kb on + strand at 3295.599 kb on + strand at 3295.600 kb on - strand at 3295.600 kb on - strand at 3295.600 kb on - strand at 3295.600 kb on - strand at 3295.600 kb on - strand at 3295.622 kb on - strand at 3295.622 kb on - strand at 3295.682 kb on + strand at 3295.682 kb on + strand at 3295.682 kb on + strand at 3295.683 kb on - strand at 3295.683 kb on - strand at 3295.744 kb on + strand at 3295.745 kb on - strand at 3295.745 kb on - strand at 3295.746 kb on + strand at 3295.746 kb on + strand at 3295.746 kb on + strand at 3295.747 kb on - strand at 3295.747 kb on - strand at 3295.747 kb on - strand at 3295.785 kb on - strand at 3295.801 kb on + strand at 3295.859 kb on - strand at 3295.885 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 3,292,545 - Pf6N2E2_2806 0.48 +1.8 3,292,545 - Pf6N2E2_2806 0.48 +1.7 3,292,568 + Pf6N2E2_2806 0.50 +0.7 3,292,853 + Pf6N2E2_2806 0.73 -0.9 3,292,853 + Pf6N2E2_2806 0.73 +1.0 3,292,979 + Pf6N2E2_2806 0.83 +0.6 3,293,062 + -0.5 3,293,062 + -1.6 3,293,063 - +0.4 3,293,066 + -2.3 3,293,066 + -0.3 3,293,066 + -0.1 3,293,066 + +0.3 3,293,066 + +0.5 3,293,067 - -0.6 3,293,067 - -0.1 3,293,067 - -0.5 3,293,067 - +0.1 3,293,067 - -0.9 3,293,067 - -1.9 3,293,224 - -0.7 3,293,229 - -1.3 3,293,477 + +3.1 3,293,496 + +0.7 3,293,496 + +0.9 3,293,496 + +0.3 3,293,496 + -2.2 3,293,496 + +2.1 3,293,497 - +0.0 3,293,690 + Pf6N2E2_2807 0.15 -1.0 3,293,918 + Pf6N2E2_2807 0.30 -0.3 3,293,919 - Pf6N2E2_2807 0.30 +0.5 3,293,973 + Pf6N2E2_2807 0.34 -1.3 3,293,975 + Pf6N2E2_2807 0.34 -0.3 3,293,975 + Pf6N2E2_2807 0.34 +0.4 3,293,975 + Pf6N2E2_2807 0.34 -2.4 3,293,975 + Pf6N2E2_2807 0.34 +1.1 3,293,975 + Pf6N2E2_2807 0.34 -0.4 3,293,975 + Pf6N2E2_2807 0.34 -2.3 3,293,976 - Pf6N2E2_2807 0.34 -0.1 3,293,976 - Pf6N2E2_2807 0.34 +0.1 3,293,976 - Pf6N2E2_2807 0.34 +1.3 3,293,976 - Pf6N2E2_2807 0.34 +0.9 3,293,976 - Pf6N2E2_2807 0.34 +0.9 3,293,976 - Pf6N2E2_2807 0.34 +0.5 3,293,976 - Pf6N2E2_2807 0.34 -0.3 3,293,976 - Pf6N2E2_2807 0.34 -2.2 3,293,976 - Pf6N2E2_2807 0.34 -0.6 3,293,976 - Pf6N2E2_2807 0.34 -1.1 3,293,976 - Pf6N2E2_2807 0.34 -0.3 3,293,976 - Pf6N2E2_2807 0.34 -0.1 3,293,982 - Pf6N2E2_2807 0.34 -1.3 3,293,982 - Pf6N2E2_2807 0.34 +2.0 3,294,098 - Pf6N2E2_2807 0.42 +0.5 3,294,114 + Pf6N2E2_2807 0.43 -0.9 3,294,115 - Pf6N2E2_2807 0.43 -0.6 3,294,118 - Pf6N2E2_2807 0.44 -0.9 3,294,118 - Pf6N2E2_2807 0.44 +1.2 3,294,118 - Pf6N2E2_2807 0.44 -0.3 3,294,118 - Pf6N2E2_2807 0.44 -1.7 3,294,275 - Pf6N2E2_2807 0.54 -2.2 3,294,286 - Pf6N2E2_2807 0.55 +0.9 3,294,293 - Pf6N2E2_2807 0.56 +1.7 3,294,552 + Pf6N2E2_2807 0.73 -0.9 3,294,553 - Pf6N2E2_2807 0.73 -0.5 3,294,553 - Pf6N2E2_2807 0.73 -0.7 3,294,901 + -1.7 3,294,902 - -0.6 3,294,902 - -0.3 3,294,902 - +1.1 3,294,902 - +0.5 3,294,920 + -1.6 3,294,920 + +0.8 3,294,920 + -1.9 3,294,920 + +0.1 3,294,921 - -0.5 3,294,921 - -1.1 3,294,921 - -2.2 3,294,934 + -0.1 3,294,934 + -1.3 3,295,021 + Pf6N2E2_2808 0.12 -0.2 3,295,021 + Pf6N2E2_2808 0.12 -2.3 3,295,022 - Pf6N2E2_2808 0.13 -1.2 3,295,022 - Pf6N2E2_2808 0.13 +1.7 3,295,072 + Pf6N2E2_2808 0.21 -2.0 3,295,072 + Pf6N2E2_2808 0.21 -0.6 3,295,072 + Pf6N2E2_2808 0.21 +2.1 3,295,073 - Pf6N2E2_2808 0.21 -0.1 3,295,073 - Pf6N2E2_2808 0.21 +1.0 3,295,073 - Pf6N2E2_2808 0.21 -1.5 3,295,073 - Pf6N2E2_2808 0.21 -0.6 3,295,073 - Pf6N2E2_2808 0.21 -1.3 3,295,409 - Pf6N2E2_2808 0.76 -1.6 3,295,409 - Pf6N2E2_2808 0.76 -0.2 3,295,599 + -0.3 3,295,599 + -0.0 3,295,599 + -0.1 3,295,600 - +2.0 3,295,600 - -0.1 3,295,600 - +1.1 3,295,600 - -0.7 3,295,600 - +1.2 3,295,622 - -0.1 3,295,622 - -2.0 3,295,682 + +1.7 3,295,682 + -0.4 3,295,682 + -0.5 3,295,683 - -1.0 3,295,683 - +1.3 3,295,744 + -1.2 3,295,745 - +0.7 3,295,745 - -0.9 3,295,746 + +0.5 3,295,746 + -0.3 3,295,746 + -0.8 3,295,747 - +0.2 3,295,747 - +1.3 3,295,747 - -0.0 3,295,785 - +0.1 3,295,801 + +0.1 3,295,859 - +2.8 3,295,885 + +0.9
Or see this region's nucleotide sequence