Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2692

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_2690 and Pf6N2E2_2691 are separated by 222 nucleotidesPf6N2E2_2691 and Pf6N2E2_2692 overlap by 7 nucleotidesPf6N2E2_2692 and Pf6N2E2_2693 are separated by 192 nucleotides Pf6N2E2_2690 - Pyrophosphate-specific outer membrane porin OprO, at 3,179,586 to 3,180,896 _2690 Pf6N2E2_2691 - FIG00955837: hypothetical protein, at 3,181,119 to 3,181,355 _2691 Pf6N2E2_2692 - RNA polymerase sigma factor RpoE, at 3,181,349 to 3,181,960 _2692 Pf6N2E2_2693 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180), at 3,182,153 to 3,183,274 _2693 Position (kb) 3181 3182Strain fitness (log2 ratio) -2 -1 0 1at 3180.415 kb on + strand, within Pf6N2E2_2690at 3180.526 kb on + strand, within Pf6N2E2_2690at 3180.526 kb on + strand, within Pf6N2E2_2690at 3180.526 kb on + strand, within Pf6N2E2_2690at 3180.527 kb on - strand, within Pf6N2E2_2690at 3180.550 kb on + strand, within Pf6N2E2_2690at 3180.589 kb on + strand, within Pf6N2E2_2690at 3180.589 kb on + strand, within Pf6N2E2_2690at 3180.589 kb on + strand, within Pf6N2E2_2690at 3180.589 kb on + strand, within Pf6N2E2_2690at 3180.590 kb on - strand, within Pf6N2E2_2690at 3180.590 kb on - strand, within Pf6N2E2_2690at 3180.601 kb on + strand, within Pf6N2E2_2690at 3180.601 kb on + strand, within Pf6N2E2_2690at 3180.601 kb on + strand, within Pf6N2E2_2690at 3180.655 kb on + strand, within Pf6N2E2_2690at 3180.655 kb on + strand, within Pf6N2E2_2690at 3180.655 kb on + strand, within Pf6N2E2_2690at 3180.655 kb on + strand, within Pf6N2E2_2690at 3180.656 kb on - strand, within Pf6N2E2_2690at 3180.656 kb on - strand, within Pf6N2E2_2690at 3180.688 kb on + strand, within Pf6N2E2_2690at 3180.688 kb on + strand, within Pf6N2E2_2690at 3180.688 kb on + strand, within Pf6N2E2_2690at 3180.688 kb on + strand, within Pf6N2E2_2690at 3180.688 kb on + strand, within Pf6N2E2_2690at 3180.688 kb on + strand, within Pf6N2E2_2690at 3180.688 kb on + strand, within Pf6N2E2_2690at 3180.689 kb on - strand, within Pf6N2E2_2690at 3180.689 kb on - strand, within Pf6N2E2_2690at 3180.689 kb on - strand, within Pf6N2E2_2690at 3180.689 kb on - strand, within Pf6N2E2_2690at 3180.692 kb on + strand, within Pf6N2E2_2690at 3180.692 kb on + strand, within Pf6N2E2_2690at 3180.692 kb on + strand, within Pf6N2E2_2690at 3180.693 kb on - strand, within Pf6N2E2_2690at 3180.693 kb on - strand, within Pf6N2E2_2690at 3180.709 kb on + strand, within Pf6N2E2_2690at 3180.709 kb on + strand, within Pf6N2E2_2690at 3180.710 kb on - strand, within Pf6N2E2_2690at 3180.710 kb on - strand, within Pf6N2E2_2690at 3180.916 kb on + strandat 3180.921 kb on + strandat 3180.921 kb on + strandat 3180.922 kb on - strandat 3180.922 kb on - strandat 3181.017 kb on + strandat 3181.035 kb on + strandat 3181.112 kb on + strandat 3181.112 kb on + strandat 3181.113 kb on - strandat 3181.136 kb on + strandat 3181.315 kb on + strand, within Pf6N2E2_2691at 3181.441 kb on + strand, within Pf6N2E2_2692at 3181.707 kb on + strand, within Pf6N2E2_2692at 3181.707 kb on + strand, within Pf6N2E2_2692at 3181.851 kb on + strand, within Pf6N2E2_2692at 3181.852 kb on - strand, within Pf6N2E2_2692at 3181.897 kb on + strand, within Pf6N2E2_2692at 3181.897 kb on + strand, within Pf6N2E2_2692at 3181.898 kb on - strand, within Pf6N2E2_2692at 3181.900 kb on - strandat 3181.900 kb on - strandat 3181.900 kb on - strandat 3181.900 kb on - strandat 3182.112 kb on - strandat 3182.162 kb on - strandat 3182.244 kb on + strandat 3182.245 kb on - strandat 3182.245 kb on - strandat 3182.881 kb on - strand, within Pf6N2E2_2693at 3182.881 kb on - strand, within Pf6N2E2_2693

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
3,180,415 + Pf6N2E2_2690 0.63 -0.9
3,180,526 + Pf6N2E2_2690 0.72 +0.5
3,180,526 + Pf6N2E2_2690 0.72 -1.1
3,180,526 + Pf6N2E2_2690 0.72 +0.6
3,180,527 - Pf6N2E2_2690 0.72 +0.8
3,180,550 + Pf6N2E2_2690 0.74 -0.9
3,180,589 + Pf6N2E2_2690 0.77 -1.4
3,180,589 + Pf6N2E2_2690 0.77 -1.3
3,180,589 + Pf6N2E2_2690 0.77 +0.1
3,180,589 + Pf6N2E2_2690 0.77 -2.0
3,180,590 - Pf6N2E2_2690 0.77 +0.2
3,180,590 - Pf6N2E2_2690 0.77 +0.6
3,180,601 + Pf6N2E2_2690 0.77 +0.3
3,180,601 + Pf6N2E2_2690 0.77 +0.2
3,180,601 + Pf6N2E2_2690 0.77 -1.9
3,180,655 + Pf6N2E2_2690 0.82 +0.3
3,180,655 + Pf6N2E2_2690 0.82 -1.1
3,180,655 + Pf6N2E2_2690 0.82 +0.0
3,180,655 + Pf6N2E2_2690 0.82 +1.7
3,180,656 - Pf6N2E2_2690 0.82 +0.6
3,180,656 - Pf6N2E2_2690 0.82 -0.5
3,180,688 + Pf6N2E2_2690 0.84 +0.8
3,180,688 + Pf6N2E2_2690 0.84 +0.8
3,180,688 + Pf6N2E2_2690 0.84 +0.4
3,180,688 + Pf6N2E2_2690 0.84 +0.9
3,180,688 + Pf6N2E2_2690 0.84 -0.2
3,180,688 + Pf6N2E2_2690 0.84 -0.6
3,180,688 + Pf6N2E2_2690 0.84 +0.6
3,180,689 - Pf6N2E2_2690 0.84 +0.1
3,180,689 - Pf6N2E2_2690 0.84 +0.8
3,180,689 - Pf6N2E2_2690 0.84 +0.8
3,180,689 - Pf6N2E2_2690 0.84 +0.6
3,180,692 + Pf6N2E2_2690 0.84 +0.2
3,180,692 + Pf6N2E2_2690 0.84 -1.2
3,180,692 + Pf6N2E2_2690 0.84 +0.9
3,180,693 - Pf6N2E2_2690 0.84 -1.0
3,180,693 - Pf6N2E2_2690 0.84 +0.4
3,180,709 + Pf6N2E2_2690 0.86 +0.1
3,180,709 + Pf6N2E2_2690 0.86 -0.2
3,180,710 - Pf6N2E2_2690 0.86 +0.8
3,180,710 - Pf6N2E2_2690 0.86 +0.5
3,180,916 + +0.8
3,180,921 + +0.8
3,180,921 + -0.6
3,180,922 - +1.1
3,180,922 - +0.3
3,181,017 + +0.3
3,181,035 + +0.2
3,181,112 + -0.7
3,181,112 + -2.0
3,181,113 - -0.9
3,181,136 + -1.1
3,181,315 + Pf6N2E2_2691 0.83 +0.2
3,181,441 + Pf6N2E2_2692 0.15 -0.6
3,181,707 + Pf6N2E2_2692 0.58 -0.8
3,181,707 + Pf6N2E2_2692 0.58 -1.1
3,181,851 + Pf6N2E2_2692 0.82 -2.6
3,181,852 - Pf6N2E2_2692 0.82 -2.1
3,181,897 + Pf6N2E2_2692 0.90 -2.2
3,181,897 + Pf6N2E2_2692 0.90 -0.7
3,181,898 - Pf6N2E2_2692 0.90 -2.4
3,181,900 - -2.4
3,181,900 - +1.1
3,181,900 - -2.5
3,181,900 - +0.4
3,182,112 - -0.9
3,182,162 - -0.2
3,182,244 + -1.2
3,182,245 - +0.6
3,182,245 - +0.1
3,182,881 - Pf6N2E2_2693 0.65 -1.5
3,182,881 - Pf6N2E2_2693 0.65 +1.5

Or see this region's nucleotide sequence