Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2690 and Pf6N2E2_2691 are separated by 222 nucleotides Pf6N2E2_2691 and Pf6N2E2_2692 overlap by 7 nucleotides Pf6N2E2_2692 and Pf6N2E2_2693 are separated by 192 nucleotides
Pf6N2E2_2690 - Pyrophosphate-specific outer membrane porin OprO, at 3,179,586 to 3,180,896
_2690
Pf6N2E2_2691 - FIG00955837: hypothetical protein, at 3,181,119 to 3,181,355
_2691
Pf6N2E2_2692 - RNA polymerase sigma factor RpoE, at 3,181,349 to 3,181,960
_2692
Pf6N2E2_2693 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180), at 3,182,153 to 3,183,274
_2693
Position (kb)
3181
3182 Strain fitness (log2 ratio)
-2
-1
0
1 at 3180.415 kb on + strand, within Pf6N2E2_2690 at 3180.526 kb on + strand, within Pf6N2E2_2690 at 3180.526 kb on + strand, within Pf6N2E2_2690 at 3180.526 kb on + strand, within Pf6N2E2_2690 at 3180.527 kb on - strand, within Pf6N2E2_2690 at 3180.550 kb on + strand, within Pf6N2E2_2690 at 3180.589 kb on + strand, within Pf6N2E2_2690 at 3180.589 kb on + strand, within Pf6N2E2_2690 at 3180.589 kb on + strand, within Pf6N2E2_2690 at 3180.589 kb on + strand, within Pf6N2E2_2690 at 3180.590 kb on - strand, within Pf6N2E2_2690 at 3180.590 kb on - strand, within Pf6N2E2_2690 at 3180.601 kb on + strand, within Pf6N2E2_2690 at 3180.601 kb on + strand, within Pf6N2E2_2690 at 3180.601 kb on + strand, within Pf6N2E2_2690 at 3180.655 kb on + strand, within Pf6N2E2_2690 at 3180.655 kb on + strand, within Pf6N2E2_2690 at 3180.655 kb on + strand, within Pf6N2E2_2690 at 3180.655 kb on + strand, within Pf6N2E2_2690 at 3180.656 kb on - strand, within Pf6N2E2_2690 at 3180.656 kb on - strand, within Pf6N2E2_2690 at 3180.688 kb on + strand, within Pf6N2E2_2690 at 3180.688 kb on + strand, within Pf6N2E2_2690 at 3180.688 kb on + strand, within Pf6N2E2_2690 at 3180.688 kb on + strand, within Pf6N2E2_2690 at 3180.688 kb on + strand, within Pf6N2E2_2690 at 3180.688 kb on + strand, within Pf6N2E2_2690 at 3180.688 kb on + strand, within Pf6N2E2_2690 at 3180.689 kb on - strand, within Pf6N2E2_2690 at 3180.689 kb on - strand, within Pf6N2E2_2690 at 3180.689 kb on - strand, within Pf6N2E2_2690 at 3180.689 kb on - strand, within Pf6N2E2_2690 at 3180.692 kb on + strand, within Pf6N2E2_2690 at 3180.692 kb on + strand, within Pf6N2E2_2690 at 3180.692 kb on + strand, within Pf6N2E2_2690 at 3180.693 kb on - strand, within Pf6N2E2_2690 at 3180.693 kb on - strand, within Pf6N2E2_2690 at 3180.709 kb on + strand, within Pf6N2E2_2690 at 3180.709 kb on + strand, within Pf6N2E2_2690 at 3180.710 kb on - strand, within Pf6N2E2_2690 at 3180.710 kb on - strand, within Pf6N2E2_2690 at 3180.916 kb on + strand at 3180.921 kb on + strand at 3180.921 kb on + strand at 3180.922 kb on - strand at 3180.922 kb on - strand at 3181.017 kb on + strand at 3181.035 kb on + strand at 3181.112 kb on + strand at 3181.112 kb on + strand at 3181.113 kb on - strand at 3181.136 kb on + strand at 3181.315 kb on + strand, within Pf6N2E2_2691 at 3181.441 kb on + strand, within Pf6N2E2_2692 at 3181.707 kb on + strand, within Pf6N2E2_2692 at 3181.707 kb on + strand, within Pf6N2E2_2692 at 3181.851 kb on + strand, within Pf6N2E2_2692 at 3181.852 kb on - strand, within Pf6N2E2_2692 at 3181.897 kb on + strand, within Pf6N2E2_2692 at 3181.897 kb on + strand, within Pf6N2E2_2692 at 3181.898 kb on - strand, within Pf6N2E2_2692 at 3181.900 kb on - strand at 3181.900 kb on - strand at 3181.900 kb on - strand at 3181.900 kb on - strand at 3182.112 kb on - strand at 3182.162 kb on - strand at 3182.244 kb on + strand at 3182.245 kb on - strand at 3182.245 kb on - strand at 3182.881 kb on - strand, within Pf6N2E2_2693 at 3182.881 kb on - strand, within Pf6N2E2_2693
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 3,180,415 + Pf6N2E2_2690 0.63 -0.9 3,180,526 + Pf6N2E2_2690 0.72 +0.5 3,180,526 + Pf6N2E2_2690 0.72 -1.1 3,180,526 + Pf6N2E2_2690 0.72 +0.6 3,180,527 - Pf6N2E2_2690 0.72 +0.8 3,180,550 + Pf6N2E2_2690 0.74 -0.9 3,180,589 + Pf6N2E2_2690 0.77 -1.4 3,180,589 + Pf6N2E2_2690 0.77 -1.3 3,180,589 + Pf6N2E2_2690 0.77 +0.1 3,180,589 + Pf6N2E2_2690 0.77 -2.0 3,180,590 - Pf6N2E2_2690 0.77 +0.2 3,180,590 - Pf6N2E2_2690 0.77 +0.6 3,180,601 + Pf6N2E2_2690 0.77 +0.3 3,180,601 + Pf6N2E2_2690 0.77 +0.2 3,180,601 + Pf6N2E2_2690 0.77 -1.9 3,180,655 + Pf6N2E2_2690 0.82 +0.3 3,180,655 + Pf6N2E2_2690 0.82 -1.1 3,180,655 + Pf6N2E2_2690 0.82 +0.0 3,180,655 + Pf6N2E2_2690 0.82 +1.7 3,180,656 - Pf6N2E2_2690 0.82 +0.6 3,180,656 - Pf6N2E2_2690 0.82 -0.5 3,180,688 + Pf6N2E2_2690 0.84 +0.8 3,180,688 + Pf6N2E2_2690 0.84 +0.8 3,180,688 + Pf6N2E2_2690 0.84 +0.4 3,180,688 + Pf6N2E2_2690 0.84 +0.9 3,180,688 + Pf6N2E2_2690 0.84 -0.2 3,180,688 + Pf6N2E2_2690 0.84 -0.6 3,180,688 + Pf6N2E2_2690 0.84 +0.6 3,180,689 - Pf6N2E2_2690 0.84 +0.1 3,180,689 - Pf6N2E2_2690 0.84 +0.8 3,180,689 - Pf6N2E2_2690 0.84 +0.8 3,180,689 - Pf6N2E2_2690 0.84 +0.6 3,180,692 + Pf6N2E2_2690 0.84 +0.2 3,180,692 + Pf6N2E2_2690 0.84 -1.2 3,180,692 + Pf6N2E2_2690 0.84 +0.9 3,180,693 - Pf6N2E2_2690 0.84 -1.0 3,180,693 - Pf6N2E2_2690 0.84 +0.4 3,180,709 + Pf6N2E2_2690 0.86 +0.1 3,180,709 + Pf6N2E2_2690 0.86 -0.2 3,180,710 - Pf6N2E2_2690 0.86 +0.8 3,180,710 - Pf6N2E2_2690 0.86 +0.5 3,180,916 + +0.8 3,180,921 + +0.8 3,180,921 + -0.6 3,180,922 - +1.1 3,180,922 - +0.3 3,181,017 + +0.3 3,181,035 + +0.2 3,181,112 + -0.7 3,181,112 + -2.0 3,181,113 - -0.9 3,181,136 + -1.1 3,181,315 + Pf6N2E2_2691 0.83 +0.2 3,181,441 + Pf6N2E2_2692 0.15 -0.6 3,181,707 + Pf6N2E2_2692 0.58 -0.8 3,181,707 + Pf6N2E2_2692 0.58 -1.1 3,181,851 + Pf6N2E2_2692 0.82 -2.6 3,181,852 - Pf6N2E2_2692 0.82 -2.1 3,181,897 + Pf6N2E2_2692 0.90 -2.2 3,181,897 + Pf6N2E2_2692 0.90 -0.7 3,181,898 - Pf6N2E2_2692 0.90 -2.4 3,181,900 - -2.4 3,181,900 - +1.1 3,181,900 - -2.5 3,181,900 - +0.4 3,182,112 - -0.9 3,182,162 - -0.2 3,182,244 + -1.2 3,182,245 - +0.6 3,182,245 - +0.1 3,182,881 - Pf6N2E2_2693 0.65 -1.5 3,182,881 - Pf6N2E2_2693 0.65 +1.5
Or see this region's nucleotide sequence