Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2083

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2081 and Pf6N2E2_2082 are separated by 217 nucleotidesPf6N2E2_2082 and Pf6N2E2_2083 are separated by 59 nucleotidesPf6N2E2_2083 and Pf6N2E2_2084 are separated by 98 nucleotides Pf6N2E2_2081 - putative exported protein, at 2,474,446 to 2,474,967 _2081 Pf6N2E2_2082 - Integral membrane protein, at 2,475,185 to 2,475,838 _2082 Pf6N2E2_2083 - hypothetical protein, at 2,475,898 to 2,476,179 _2083 Pf6N2E2_2084 - sensory box histidine kinase/response regulator, at 2,476,278 to 2,478,341 _2084 Position (kb) 2475 2476 2477Strain fitness (log2 ratio) -2 -1 0 1 2at 2474.965 kb on + strandat 2475.072 kb on - strandat 2475.077 kb on - strandat 2475.094 kb on + strandat 2475.095 kb on - strandat 2475.095 kb on - strandat 2475.124 kb on - strandat 2475.124 kb on - strandat 2475.124 kb on - strandat 2475.124 kb on - strandat 2475.278 kb on + strand, within Pf6N2E2_2082at 2475.330 kb on + strand, within Pf6N2E2_2082at 2475.347 kb on + strand, within Pf6N2E2_2082at 2475.347 kb on + strand, within Pf6N2E2_2082at 2475.347 kb on + strand, within Pf6N2E2_2082at 2475.348 kb on - strand, within Pf6N2E2_2082at 2475.392 kb on + strand, within Pf6N2E2_2082at 2475.392 kb on + strand, within Pf6N2E2_2082at 2475.392 kb on + strand, within Pf6N2E2_2082at 2475.393 kb on - strand, within Pf6N2E2_2082at 2475.393 kb on - strand, within Pf6N2E2_2082at 2475.474 kb on + strand, within Pf6N2E2_2082at 2475.474 kb on + strand, within Pf6N2E2_2082at 2475.491 kb on + strand, within Pf6N2E2_2082at 2475.491 kb on + strand, within Pf6N2E2_2082at 2475.492 kb on - strand, within Pf6N2E2_2082at 2475.492 kb on - strand, within Pf6N2E2_2082at 2475.492 kb on - strand, within Pf6N2E2_2082at 2475.587 kb on + strand, within Pf6N2E2_2082at 2475.587 kb on + strand, within Pf6N2E2_2082at 2475.588 kb on - strand, within Pf6N2E2_2082at 2475.588 kb on - strand, within Pf6N2E2_2082at 2475.588 kb on - strand, within Pf6N2E2_2082at 2475.588 kb on - strand, within Pf6N2E2_2082at 2475.650 kb on + strand, within Pf6N2E2_2082at 2475.662 kb on + strand, within Pf6N2E2_2082at 2475.662 kb on + strand, within Pf6N2E2_2082at 2475.671 kb on + strand, within Pf6N2E2_2082at 2475.672 kb on - strand, within Pf6N2E2_2082at 2475.672 kb on - strand, within Pf6N2E2_2082at 2475.689 kb on + strand, within Pf6N2E2_2082at 2475.690 kb on - strand, within Pf6N2E2_2082at 2475.690 kb on - strand, within Pf6N2E2_2082at 2475.690 kb on - strand, within Pf6N2E2_2082at 2475.771 kb on + strand, within Pf6N2E2_2082at 2475.771 kb on + strand, within Pf6N2E2_2082at 2475.772 kb on - strand, within Pf6N2E2_2082at 2475.772 kb on - strand, within Pf6N2E2_2082at 2475.984 kb on + strand, within Pf6N2E2_2083at 2475.984 kb on + strand, within Pf6N2E2_2083at 2475.984 kb on + strand, within Pf6N2E2_2083at 2475.984 kb on + strand, within Pf6N2E2_2083at 2475.985 kb on - strand, within Pf6N2E2_2083at 2476.180 kb on - strandat 2476.180 kb on - strandat 2476.226 kb on + strandat 2476.328 kb on - strandat 2476.711 kb on + strand, within Pf6N2E2_2084at 2476.711 kb on + strand, within Pf6N2E2_2084at 2476.711 kb on + strand, within Pf6N2E2_2084at 2476.712 kb on - strand, within Pf6N2E2_2084at 2476.712 kb on - strand, within Pf6N2E2_2084at 2476.712 kb on - strand, within Pf6N2E2_2084at 2476.719 kb on + strand, within Pf6N2E2_2084at 2476.912 kb on + strand, within Pf6N2E2_2084at 2476.912 kb on + strand, within Pf6N2E2_2084at 2476.912 kb on + strand, within Pf6N2E2_2084at 2476.912 kb on + strand, within Pf6N2E2_2084at 2477.152 kb on + strand, within Pf6N2E2_2084at 2477.152 kb on + strand, within Pf6N2E2_2084at 2477.152 kb on + strand, within Pf6N2E2_2084at 2477.152 kb on + strand, within Pf6N2E2_2084at 2477.152 kb on + strand, within Pf6N2E2_2084at 2477.153 kb on - strand, within Pf6N2E2_2084at 2477.153 kb on - strand, within Pf6N2E2_2084at 2477.153 kb on - strand, within Pf6N2E2_2084at 2477.153 kb on - strand, within Pf6N2E2_2084at 2477.153 kb on - strand, within Pf6N2E2_2084at 2477.153 kb on - strand, within Pf6N2E2_2084at 2477.153 kb on - strand, within Pf6N2E2_2084at 2477.153 kb on - strand, within Pf6N2E2_2084at 2477.153 kb on - strand, within Pf6N2E2_2084at 2477.153 kb on - strand, within Pf6N2E2_2084at 2477.170 kb on + strand, within Pf6N2E2_2084at 2477.171 kb on - strand, within Pf6N2E2_2084

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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2,474,965 + +0.4
2,475,072 - +0.7
2,475,077 - -0.7
2,475,094 + +1.1
2,475,095 - +0.8
2,475,095 - +0.8
2,475,124 - -2.1
2,475,124 - +0.6
2,475,124 - -0.4
2,475,124 - -1.1
2,475,278 + Pf6N2E2_2082 0.14 -1.9
2,475,330 + Pf6N2E2_2082 0.22 +0.7
2,475,347 + Pf6N2E2_2082 0.25 -0.4
2,475,347 + Pf6N2E2_2082 0.25 +0.0
2,475,347 + Pf6N2E2_2082 0.25 +2.3
2,475,348 - Pf6N2E2_2082 0.25 -1.0
2,475,392 + Pf6N2E2_2082 0.32 +0.0
2,475,392 + Pf6N2E2_2082 0.32 -0.3
2,475,392 + Pf6N2E2_2082 0.32 -1.4
2,475,393 - Pf6N2E2_2082 0.32 +0.2
2,475,393 - Pf6N2E2_2082 0.32 -1.9
2,475,474 + Pf6N2E2_2082 0.44 -2.4
2,475,474 + Pf6N2E2_2082 0.44 -2.0
2,475,491 + Pf6N2E2_2082 0.47 -0.4
2,475,491 + Pf6N2E2_2082 0.47 -0.6
2,475,492 - Pf6N2E2_2082 0.47 +0.6
2,475,492 - Pf6N2E2_2082 0.47 +0.0
2,475,492 - Pf6N2E2_2082 0.47 -1.7
2,475,587 + Pf6N2E2_2082 0.61 +1.5
2,475,587 + Pf6N2E2_2082 0.61 -0.2
2,475,588 - Pf6N2E2_2082 0.62 +0.6
2,475,588 - Pf6N2E2_2082 0.62 -1.0
2,475,588 - Pf6N2E2_2082 0.62 +1.6
2,475,588 - Pf6N2E2_2082 0.62 -0.2
2,475,650 + Pf6N2E2_2082 0.71 -0.8
2,475,662 + Pf6N2E2_2082 0.73 -0.4
2,475,662 + Pf6N2E2_2082 0.73 -0.8
2,475,671 + Pf6N2E2_2082 0.74 +2.0
2,475,672 - Pf6N2E2_2082 0.74 +0.0
2,475,672 - Pf6N2E2_2082 0.74 +0.1
2,475,689 + Pf6N2E2_2082 0.77 +0.9
2,475,690 - Pf6N2E2_2082 0.77 +2.5
2,475,690 - Pf6N2E2_2082 0.77 +0.5
2,475,690 - Pf6N2E2_2082 0.77 +0.6
2,475,771 + Pf6N2E2_2082 0.90 -1.5
2,475,771 + Pf6N2E2_2082 0.90 +1.3
2,475,772 - Pf6N2E2_2082 0.90 +1.2
2,475,772 - Pf6N2E2_2082 0.90 -0.1
2,475,984 + Pf6N2E2_2083 0.30 -0.1
2,475,984 + Pf6N2E2_2083 0.30 -1.8
2,475,984 + Pf6N2E2_2083 0.30 -1.1
2,475,984 + Pf6N2E2_2083 0.30 -2.6
2,475,985 - Pf6N2E2_2083 0.31 -2.6
2,476,180 - +0.4
2,476,180 - +0.9
2,476,226 + -0.8
2,476,328 - -2.5
2,476,711 + Pf6N2E2_2084 0.21 +0.9
2,476,711 + Pf6N2E2_2084 0.21 -1.0
2,476,711 + Pf6N2E2_2084 0.21 +0.5
2,476,712 - Pf6N2E2_2084 0.21 +2.6
2,476,712 - Pf6N2E2_2084 0.21 +0.6
2,476,712 - Pf6N2E2_2084 0.21 -1.1
2,476,719 + Pf6N2E2_2084 0.21 -1.6
2,476,912 + Pf6N2E2_2084 0.31 +0.2
2,476,912 + Pf6N2E2_2084 0.31 +1.0
2,476,912 + Pf6N2E2_2084 0.31 -1.8
2,476,912 + Pf6N2E2_2084 0.31 -2.5
2,477,152 + Pf6N2E2_2084 0.42 -1.0
2,477,152 + Pf6N2E2_2084 0.42 -0.7
2,477,152 + Pf6N2E2_2084 0.42 -1.4
2,477,152 + Pf6N2E2_2084 0.42 +0.5
2,477,152 + Pf6N2E2_2084 0.42 +1.3
2,477,153 - Pf6N2E2_2084 0.42 -0.2
2,477,153 - Pf6N2E2_2084 0.42 -2.0
2,477,153 - Pf6N2E2_2084 0.42 -0.4
2,477,153 - Pf6N2E2_2084 0.42 -0.4
2,477,153 - Pf6N2E2_2084 0.42 +1.5
2,477,153 - Pf6N2E2_2084 0.42 +0.8
2,477,153 - Pf6N2E2_2084 0.42 -0.7
2,477,153 - Pf6N2E2_2084 0.42 -0.8
2,477,153 - Pf6N2E2_2084 0.42 -1.8
2,477,153 - Pf6N2E2_2084 0.42 +1.6
2,477,170 + Pf6N2E2_2084 0.43 -0.7
2,477,171 - Pf6N2E2_2084 0.43 -0.3

Or see this region's nucleotide sequence