Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_143

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_142 and Pf6N2E2_143 are separated by 177 nucleotidesPf6N2E2_143 and Pf6N2E2_144 are separated by 83 nucleotides Pf6N2E2_142 - Exodeoxyribonuclease III (EC 3.1.11.2), at 193,732 to 194,544 _142 Pf6N2E2_143 - Histone acetyltransferase HPA2 and related acetyltransferases, at 194,722 to 195,372 _143 Pf6N2E2_144 - Uncharacterized protein YtfM precursor, at 195,456 to 197,165 _144 Position (kb) 194 195 196Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 194.216 kb on + strand, within Pf6N2E2_142at 194.216 kb on + strand, within Pf6N2E2_142at 194.315 kb on + strand, within Pf6N2E2_142at 194.315 kb on + strand, within Pf6N2E2_142at 194.316 kb on - strand, within Pf6N2E2_142at 194.316 kb on - strand, within Pf6N2E2_142at 194.316 kb on - strand, within Pf6N2E2_142at 194.316 kb on - strand, within Pf6N2E2_142at 194.378 kb on + strand, within Pf6N2E2_142at 194.574 kb on + strandat 194.574 kb on + strandat 194.575 kb on - strandat 194.575 kb on - strandat 194.575 kb on - strandat 194.641 kb on + strandat 194.641 kb on + strandat 194.641 kb on + strandat 194.642 kb on - strandat 194.670 kb on + strandat 194.671 kb on - strandat 194.677 kb on + strandat 194.757 kb on + strandat 194.757 kb on + strandat 194.757 kb on + strandat 194.758 kb on - strandat 194.773 kb on + strandat 194.801 kb on - strand, within Pf6N2E2_143at 194.801 kb on - strand, within Pf6N2E2_143at 194.801 kb on - strand, within Pf6N2E2_143at 194.801 kb on - strand, within Pf6N2E2_143at 194.833 kb on + strand, within Pf6N2E2_143at 194.833 kb on + strand, within Pf6N2E2_143at 194.834 kb on - strand, within Pf6N2E2_143at 194.834 kb on - strand, within Pf6N2E2_143at 194.834 kb on - strand, within Pf6N2E2_143at 194.834 kb on - strand, within Pf6N2E2_143at 195.074 kb on - strand, within Pf6N2E2_143at 195.074 kb on - strand, within Pf6N2E2_143at 195.119 kb on + strand, within Pf6N2E2_143at 195.119 kb on + strand, within Pf6N2E2_143at 195.119 kb on + strand, within Pf6N2E2_143at 195.119 kb on + strand, within Pf6N2E2_143at 195.119 kb on + strand, within Pf6N2E2_143at 195.120 kb on - strand, within Pf6N2E2_143at 195.120 kb on - strand, within Pf6N2E2_143at 195.120 kb on - strand, within Pf6N2E2_143at 195.192 kb on + strand, within Pf6N2E2_143at 195.192 kb on + strand, within Pf6N2E2_143at 195.192 kb on + strand, within Pf6N2E2_143at 195.192 kb on + strand, within Pf6N2E2_143at 195.192 kb on + strand, within Pf6N2E2_143at 195.192 kb on + strand, within Pf6N2E2_143at 195.193 kb on - strand, within Pf6N2E2_143at 195.193 kb on - strand, within Pf6N2E2_143at 195.193 kb on - strand, within Pf6N2E2_143at 195.254 kb on - strand, within Pf6N2E2_143at 195.254 kb on - strand, within Pf6N2E2_143at 195.254 kb on - strand, within Pf6N2E2_143at 195.254 kb on - strand, within Pf6N2E2_143at 195.265 kb on + strand, within Pf6N2E2_143at 195.266 kb on - strand, within Pf6N2E2_143at 195.268 kb on - strand, within Pf6N2E2_143at 195.281 kb on - strand, within Pf6N2E2_143at 195.371 kb on - strandat 195.414 kb on + strandat 195.520 kb on + strandat 195.520 kb on + strandat 195.521 kb on - strandat 195.521 kb on - strandat 195.559 kb on + strandat 195.559 kb on + strandat 195.559 kb on + strandat 195.559 kb on + strandat 195.559 kb on + strandat 195.559 kb on + strandat 195.559 kb on + strandat 195.559 kb on + strandat 195.560 kb on - strandat 195.560 kb on - strandat 195.560 kb on - strandat 195.560 kb on - strandat 195.560 kb on - strandat 195.560 kb on - strandat 195.560 kb on - strandat 195.560 kb on - strandat 195.560 kb on - strandat 195.560 kb on - strandat 195.560 kb on - strandat 195.560 kb on - strandat 195.560 kb on - strandat 195.567 kb on + strandat 195.567 kb on + strandat 195.567 kb on + strandat 195.567 kb on + strandat 195.567 kb on + strandat 195.567 kb on + strandat 195.567 kb on + strandat 195.567 kb on + strandat 195.567 kb on + strandat 195.567 kb on + strandat 195.567 kb on + strandat 195.568 kb on - strandat 195.568 kb on - strandat 195.568 kb on - strandat 195.568 kb on - strandat 195.568 kb on - strandat 195.569 kb on + strandat 195.570 kb on - strandat 195.570 kb on - strandat 195.664 kb on - strand, within Pf6N2E2_144at 195.666 kb on + strand, within Pf6N2E2_144at 195.666 kb on + strandat 195.982 kb on - strand, within Pf6N2E2_144at 195.999 kb on + strand, within Pf6N2E2_144at 195.999 kb on + strandat 195.999 kb on + strand, within Pf6N2E2_144at 196.000 kb on - strand, within Pf6N2E2_144at 196.089 kb on + strand, within Pf6N2E2_144at 196.090 kb on - strand, within Pf6N2E2_144at 196.090 kb on - strand, within Pf6N2E2_144at 196.141 kb on - strand, within Pf6N2E2_144at 196.326 kb on + strand, within Pf6N2E2_144at 196.326 kb on + strand, within Pf6N2E2_144at 196.326 kb on + strandat 196.327 kb on - strand, within Pf6N2E2_144at 196.327 kb on - strand, within Pf6N2E2_144

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
194,216 + Pf6N2E2_142 0.60 +0.4
194,216 + Pf6N2E2_142 0.60 -0.7
194,315 + Pf6N2E2_142 0.72 +0.1
194,315 + Pf6N2E2_142 0.72 +0.6
194,316 - Pf6N2E2_142 0.72 -0.9
194,316 - Pf6N2E2_142 0.72 -0.1
194,316 - Pf6N2E2_142 0.72 -2.2
194,316 - Pf6N2E2_142 0.72 +1.9
194,378 + Pf6N2E2_142 0.79 +0.9
194,574 + -0.4
194,574 + -1.0
194,575 - +0.3
194,575 - +0.8
194,575 - -0.4
194,641 + -1.0
194,641 + -2.4
194,641 + -0.3
194,642 - -0.2
194,670 + -0.4
194,671 - +0.3
194,677 + -0.3
194,757 + -0.5
194,757 + -0.7
194,757 + -0.3
194,758 - +0.2
194,773 + +0.1
194,801 - Pf6N2E2_143 0.12 +1.7
194,801 - Pf6N2E2_143 0.12 -1.0
194,801 - Pf6N2E2_143 0.12 +0.0
194,801 - Pf6N2E2_143 0.12 +0.6
194,833 + Pf6N2E2_143 0.17 +0.2
194,833 + Pf6N2E2_143 0.17 +0.3
194,834 - Pf6N2E2_143 0.17 +1.2
194,834 - Pf6N2E2_143 0.17 -1.2
194,834 - Pf6N2E2_143 0.17 +0.9
194,834 - Pf6N2E2_143 0.17 -0.2
195,074 - Pf6N2E2_143 0.54 +0.6
195,074 - Pf6N2E2_143 0.54 -1.4
195,119 + Pf6N2E2_143 0.61 +1.2
195,119 + Pf6N2E2_143 0.61 -2.1
195,119 + Pf6N2E2_143 0.61 -0.9
195,119 + Pf6N2E2_143 0.61 +1.1
195,119 + Pf6N2E2_143 0.61 -1.5
195,120 - Pf6N2E2_143 0.61 -1.3
195,120 - Pf6N2E2_143 0.61 +0.3
195,120 - Pf6N2E2_143 0.61 +1.0
195,192 + Pf6N2E2_143 0.72 +1.6
195,192 + Pf6N2E2_143 0.72 +0.1
195,192 + Pf6N2E2_143 0.72 -0.4
195,192 + Pf6N2E2_143 0.72 +1.7
195,192 + Pf6N2E2_143 0.72 +0.6
195,192 + Pf6N2E2_143 0.72 +1.1
195,193 - Pf6N2E2_143 0.72 -0.4
195,193 - Pf6N2E2_143 0.72 +2.4
195,193 - Pf6N2E2_143 0.72 +0.9
195,254 - Pf6N2E2_143 0.82 +0.0
195,254 - Pf6N2E2_143 0.82 +1.0
195,254 - Pf6N2E2_143 0.82 +0.4
195,254 - Pf6N2E2_143 0.82 +1.2
195,265 + Pf6N2E2_143 0.83 -0.3
195,266 - Pf6N2E2_143 0.84 +3.3
195,268 - Pf6N2E2_143 0.84 -1.7
195,281 - Pf6N2E2_143 0.86 -0.7
195,371 - -0.8
195,414 + +1.2
195,520 + -1.5
195,520 + -2.8
195,521 - -1.8
195,521 - -1.5
195,559 + +0.1
195,559 + -0.5
195,559 + -0.1
195,559 + +1.2
195,559 + -3.0
195,559 + -2.5
195,559 + -0.0
195,559 + -0.3
195,560 - +1.2
195,560 - -1.8
195,560 - +0.1
195,560 - -1.4
195,560 - +2.2
195,560 - -0.9
195,560 - -0.3
195,560 - -3.1
195,560 - +1.6
195,560 - -1.5
195,560 - -1.7
195,560 - -1.6
195,560 - +0.1
195,567 + -2.3
195,567 + +0.2
195,567 + -3.0
195,567 + -0.2
195,567 + -2.2
195,567 + -0.7
195,567 + +0.6
195,567 + +0.1
195,567 + -1.9
195,567 + -1.0
195,567 + -0.1
195,568 - -1.2
195,568 - +0.3
195,568 - +0.6
195,568 - -0.7
195,568 - -0.4
195,569 + -1.4
195,570 - +1.0
195,570 - -1.4
195,664 - Pf6N2E2_144 0.12 -2.2
195,666 + Pf6N2E2_144 0.12 +0.9
195,666 + +1.2
195,982 - Pf6N2E2_144 0.31 +0.6
195,999 + Pf6N2E2_144 0.32 -1.8
195,999 + +4.2
195,999 + Pf6N2E2_144 0.32 -1.3
196,000 - Pf6N2E2_144 0.32 +0.2
196,089 + Pf6N2E2_144 0.37 -3.2
196,090 - Pf6N2E2_144 0.37 -0.5
196,090 - Pf6N2E2_144 0.37 -0.6
196,141 - Pf6N2E2_144 0.40 -1.6
196,326 + Pf6N2E2_144 0.51 +0.1
196,326 + Pf6N2E2_144 0.51 -2.0
196,326 + +0.2
196,327 - Pf6N2E2_144 0.51 -0.5
196,327 - Pf6N2E2_144 0.51 -1.0

Or see this region's nucleotide sequence