Experiment: m.b. 5-Hydroxymethylfurfural 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1932 and HP15_1933 are separated by 62 nucleotides HP15_1933 and HP15_1934 are separated by 111 nucleotides HP15_1934 and HP15_1935 are separated by 383 nucleotides
HP15_1932: HP15_1932 - methylisocitrate lyase 2, at 2,051,366 to 2,052,253
_1932
HP15_1933: HP15_1933 - transcriptional regulator, GntR family, at 2,052,316 to 2,052,996
_1933
HP15_1934: HP15_1934 - periplasmic glucan biosynthesis protein MdoG, at 2,053,108 to 2,054,694
_1934
HP15_1935: HP15_1935 - UTP-glucose-1-phosphate uridylyltransferase, at 2,055,078 to 2,055,914
_1935
Position (kb)
2053
2054
2055 Strain fitness (log2 ratio)
-1
0
1 at 2052.481 kb on - strand, within HP15_1933 at 2052.494 kb on + strand, within HP15_1933 at 2052.584 kb on + strand, within HP15_1933 at 2052.624 kb on - strand, within HP15_1933 at 2052.840 kb on - strand, within HP15_1933 at 2052.850 kb on - strand, within HP15_1933 at 2052.962 kb on + strand at 2052.970 kb on - strand at 2053.193 kb on - strand at 2053.235 kb on + strand at 2053.314 kb on - strand, within HP15_1934 at 2053.314 kb on - strand, within HP15_1934 at 2053.330 kb on - strand, within HP15_1934 at 2053.428 kb on + strand, within HP15_1934 at 2053.492 kb on + strand, within HP15_1934 at 2053.513 kb on - strand, within HP15_1934 at 2053.581 kb on - strand, within HP15_1934 at 2053.610 kb on - strand, within HP15_1934 at 2053.610 kb on - strand, within HP15_1934 at 2053.626 kb on + strand, within HP15_1934 at 2053.648 kb on - strand, within HP15_1934 at 2053.697 kb on + strand, within HP15_1934 at 2053.769 kb on + strand, within HP15_1934 at 2053.769 kb on + strand, within HP15_1934 at 2053.852 kb on + strand, within HP15_1934 at 2053.884 kb on + strand, within HP15_1934 at 2053.892 kb on + strand, within HP15_1934 at 2054.010 kb on + strand, within HP15_1934 at 2054.028 kb on - strand, within HP15_1934 at 2054.030 kb on + strand, within HP15_1934 at 2054.039 kb on - strand, within HP15_1934 at 2054.149 kb on + strand, within HP15_1934 at 2054.204 kb on + strand, within HP15_1934 at 2054.382 kb on + strand, within HP15_1934 at 2054.444 kb on + strand, within HP15_1934 at 2054.545 kb on + strand at 2054.643 kb on + strand at 2054.669 kb on + strand at 2054.856 kb on + strand at 2054.864 kb on - strand at 2054.911 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 5-Hydroxymethylfurfural 2.5 mM remove 2,052,481 - HP15_1933 0.24 -0.3 2,052,494 + HP15_1933 0.26 -0.4 2,052,584 + HP15_1933 0.39 -0.5 2,052,624 - HP15_1933 0.45 -0.2 2,052,840 - HP15_1933 0.77 +1.7 2,052,850 - HP15_1933 0.78 +0.5 2,052,962 + +0.2 2,052,970 - +0.3 2,053,193 - +0.3 2,053,235 + +0.6 2,053,314 - HP15_1934 0.13 +0.4 2,053,314 - HP15_1934 0.13 +0.2 2,053,330 - HP15_1934 0.14 +0.3 2,053,428 + HP15_1934 0.20 -0.2 2,053,492 + HP15_1934 0.24 -0.2 2,053,513 - HP15_1934 0.26 -0.8 2,053,581 - HP15_1934 0.30 +0.3 2,053,610 - HP15_1934 0.32 -0.1 2,053,610 - HP15_1934 0.32 -0.4 2,053,626 + HP15_1934 0.33 +0.5 2,053,648 - HP15_1934 0.34 +0.3 2,053,697 + HP15_1934 0.37 +0.2 2,053,769 + HP15_1934 0.42 -0.3 2,053,769 + HP15_1934 0.42 +0.5 2,053,852 + HP15_1934 0.47 +0.3 2,053,884 + HP15_1934 0.49 +0.5 2,053,892 + HP15_1934 0.49 +0.2 2,054,010 + HP15_1934 0.57 +0.6 2,054,028 - HP15_1934 0.58 +0.6 2,054,030 + HP15_1934 0.58 +1.3 2,054,039 - HP15_1934 0.59 +0.2 2,054,149 + HP15_1934 0.66 -0.4 2,054,204 + HP15_1934 0.69 -0.6 2,054,382 + HP15_1934 0.80 -1.7 2,054,444 + HP15_1934 0.84 +0.4 2,054,545 + -0.5 2,054,643 + -0.2 2,054,669 + +0.5 2,054,856 + +0.2 2,054,864 - -0.5 2,054,911 + +0.9
Or see this region's nucleotide sequence