Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1832

Experiment: MoYLS4 with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDORF37657 and DORF37658 overlap by 154 nucleotidesDORF37658 and DVU1832 are separated by 353 nucleotidesDVU1832 and ppsA are separated by 339 nucleotides DORF37657: DORF37657 - SEED: Magnesium and cobalt efflux protein CorC, at 1,896,865 to 1,897,251 DORF37657 DORF37658: DORF37658 - SEED: Magnesium and cobalt efflux protein CorC, at 1,897,098 to 1,897,691 DORF37658 DVU1832: DVU1832 - hypothetical protein (TIGR), at 1,898,045 to 1,898,146 DVU1832 DVU1833: ppsA - phosphoenolpyruvate synthase, putative (TIGR), at 1,898,486 to 1,902,061 ppsA Position (kb) 1898 1899Strain fitness (log2 ratio) -1 0 1at 1897.074 kb on - strand, within DORF37657at 1897.131 kb on - strandat 1897.197 kb on + strandat 1897.367 kb on - strand, within DORF37658at 1897.401 kb on - strand, within DORF37658at 1897.478 kb on + strand, within DORF37658at 1897.552 kb on + strand, within DORF37658at 1897.607 kb on - strand, within DORF37658at 1897.719 kb on + strandat 1897.883 kb on + strandat 1897.901 kb on - strandat 1898.233 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM
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1,897,074 - DORF37657 0.54 -0.6
1,897,131 - -0.7
1,897,197 + -0.8
1,897,367 - DORF37658 0.45 -0.2
1,897,401 - DORF37658 0.51 -0.4
1,897,478 + DORF37658 0.64 -0.6
1,897,552 + DORF37658 0.76 -0.5
1,897,607 - DORF37658 0.86 -0.2
1,897,719 + -0.3
1,897,883 + +0.2
1,897,901 - -0.2
1,898,233 - -0.5

Or see this region's nucleotide sequence