Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4263.1 and Xcc-8004.4264.1 are separated by 1 nucleotides Xcc-8004.4264.1 and Xcc-8004.4265.1 are separated by 41 nucleotides Xcc-8004.4265.1 and Xcc-8004.4266.1 are separated by 130 nucleotides
Xcc-8004.4263.1: Xcc-8004.4263.1 - Optional hypothetical component of the B12 transporter BtuM, at 4,083,391 to 4,083,969
Xcc-8004.4263.1
Xcc-8004.4264.1: Xcc-8004.4264.1 - ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 4,083,971 to 4,084,528
Xcc-8004.4264.1
Xcc-8004.4265.1: Xcc-8004.4265.1 - acetoin utilization family protein, at 4,084,570 to 4,085,475
Xcc-8004.4265.1
Xcc-8004.4266.1: Xcc-8004.4266.1 - Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor, at 4,085,606 to 4,088,035
Xcc-8004.4266.1
Position (kb) 4084
4085
4086 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.623 kb on - strand, within Xcc-8004.4263.1 at 4083.623 kb on - strand, within Xcc-8004.4263.1 at 4083.623 kb on - strand, within Xcc-8004.4263.1 at 4083.623 kb on - strand, within Xcc-8004.4263.1 at 4083.623 kb on - strand, within Xcc-8004.4263.1 at 4083.640 kb on + strand, within Xcc-8004.4263.1 at 4083.641 kb on - strand, within Xcc-8004.4263.1 at 4083.661 kb on + strand, within Xcc-8004.4263.1 at 4083.661 kb on + strand, within Xcc-8004.4263.1 at 4083.662 kb on - strand, within Xcc-8004.4263.1 at 4083.662 kb on - strand, within Xcc-8004.4263.1 at 4083.704 kb on - strand, within Xcc-8004.4263.1 at 4083.704 kb on - strand, within Xcc-8004.4263.1 at 4083.796 kb on + strand, within Xcc-8004.4263.1 at 4083.796 kb on + strand, within Xcc-8004.4263.1 at 4083.797 kb on - strand, within Xcc-8004.4263.1 at 4083.797 kb on - strand, within Xcc-8004.4263.1 at 4083.797 kb on - strand, within Xcc-8004.4263.1 at 4083.797 kb on - strand, within Xcc-8004.4263.1 at 4083.797 kb on - strand, within Xcc-8004.4263.1 at 4083.797 kb on - strand, within Xcc-8004.4263.1 at 4083.850 kb on + strand, within Xcc-8004.4263.1 at 4083.850 kb on + strand, within Xcc-8004.4263.1 at 4083.851 kb on - strand, within Xcc-8004.4263.1 at 4083.871 kb on + strand, within Xcc-8004.4263.1 at 4083.871 kb on + strand, within Xcc-8004.4263.1 at 4083.871 kb on + strand, within Xcc-8004.4263.1 at 4083.871 kb on + strand, within Xcc-8004.4263.1 at 4083.872 kb on - strand, within Xcc-8004.4263.1 at 4083.892 kb on + strand, within Xcc-8004.4263.1 at 4083.892 kb on + strand, within Xcc-8004.4263.1 at 4083.892 kb on + strand, within Xcc-8004.4263.1 at 4083.892 kb on + strand, within Xcc-8004.4263.1 at 4083.892 kb on + strand, within Xcc-8004.4263.1 at 4083.892 kb on + strand, within Xcc-8004.4263.1 at 4083.892 kb on + strand, within Xcc-8004.4263.1 at 4083.893 kb on - strand, within Xcc-8004.4263.1 at 4083.893 kb on - strand, within Xcc-8004.4263.1 at 4083.893 kb on - strand, within Xcc-8004.4263.1 at 4083.893 kb on - strand, within Xcc-8004.4263.1 at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.997 kb on + strand at 4083.997 kb on + strand at 4083.997 kb on + strand at 4083.997 kb on + strand at 4083.998 kb on - strand at 4083.998 kb on - strand at 4083.998 kb on - strand at 4083.998 kb on - strand at 4084.021 kb on + strand at 4084.039 kb on + strand, within Xcc-8004.4264.1 at 4084.040 kb on - strand, within Xcc-8004.4264.1 at 4084.040 kb on - strand, within Xcc-8004.4264.1 at 4084.076 kb on + strand, within Xcc-8004.4264.1 at 4084.555 kb on + strand at 4084.555 kb on + strand at 4084.555 kb on + strand at 4084.555 kb on + strand at 4084.555 kb on + strand at 4084.555 kb on + strand at 4084.555 kb on + strand at 4084.555 kb on + strand at 4084.555 kb on + strand at 4084.556 kb on - strand at 4084.556 kb on - strand at 4084.556 kb on - strand at 4084.556 kb on - strand at 4084.556 kb on - strand at 4084.556 kb on - strand at 4084.781 kb on - strand, within Xcc-8004.4265.1 at 4084.800 kb on + strand, within Xcc-8004.4265.1 at 4084.800 kb on + strand, within Xcc-8004.4265.1 at 4084.801 kb on - strand, within Xcc-8004.4265.1 at 4084.801 kb on - strand, within Xcc-8004.4265.1 at 4085.022 kb on + strand, within Xcc-8004.4265.1 at 4085.022 kb on + strand, within Xcc-8004.4265.1 at 4085.022 kb on + strand, within Xcc-8004.4265.1 at 4085.023 kb on - strand, within Xcc-8004.4265.1 at 4085.023 kb on - strand, within Xcc-8004.4265.1 at 4085.023 kb on - strand, within Xcc-8004.4265.1 at 4085.023 kb on - strand, within Xcc-8004.4265.1 at 4085.095 kb on + strand, within Xcc-8004.4265.1 at 4085.095 kb on + strand, within Xcc-8004.4265.1 at 4085.095 kb on + strand, within Xcc-8004.4265.1 at 4085.096 kb on - strand, within Xcc-8004.4265.1 at 4085.096 kb on - strand, within Xcc-8004.4265.1 at 4085.096 kb on - strand, within Xcc-8004.4265.1 at 4085.122 kb on + strand, within Xcc-8004.4265.1 at 4085.399 kb on + strand at 4085.399 kb on + strand at 4085.420 kb on - strand at 4085.554 kb on + strand at 4085.554 kb on + strand at 4085.554 kb on + strand at 4085.554 kb on + strand at 4085.554 kb on + strand at 4085.563 kb on + strand at 4085.563 kb on + strand at 4085.564 kb on - strand at 4085.564 kb on - strand at 4085.565 kb on + strand at 4085.565 kb on + strand at 4085.575 kb on + strand at 4085.575 kb on + strand at 4085.575 kb on + strand at 4085.587 kb on + strand at 4085.587 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days remove 4,083,622 + Xcc-8004.4263.1 0.40 -0.5 4,083,622 + Xcc-8004.4263.1 0.40 -0.3 4,083,622 + Xcc-8004.4263.1 0.40 -0.2 4,083,622 + Xcc-8004.4263.1 0.40 -0.3 4,083,622 + Xcc-8004.4263.1 0.40 +0.4 4,083,622 + Xcc-8004.4263.1 0.40 +0.8 4,083,622 + Xcc-8004.4263.1 0.40 -1.0 4,083,622 + Xcc-8004.4263.1 0.40 +0.3 4,083,623 - Xcc-8004.4263.1 0.40 -0.1 4,083,623 - Xcc-8004.4263.1 0.40 -0.2 4,083,623 - Xcc-8004.4263.1 0.40 -0.2 4,083,623 - Xcc-8004.4263.1 0.40 +0.1 4,083,623 - Xcc-8004.4263.1 0.40 -0.5 4,083,640 + Xcc-8004.4263.1 0.43 -0.4 4,083,641 - Xcc-8004.4263.1 0.43 +0.4 4,083,661 + Xcc-8004.4263.1 0.47 +0.4 4,083,661 + Xcc-8004.4263.1 0.47 -0.2 4,083,662 - Xcc-8004.4263.1 0.47 +0.2 4,083,662 - Xcc-8004.4263.1 0.47 -2.4 4,083,704 - Xcc-8004.4263.1 0.54 +0.3 4,083,704 - Xcc-8004.4263.1 0.54 -1.4 4,083,796 + Xcc-8004.4263.1 0.70 +0.3 4,083,796 + Xcc-8004.4263.1 0.70 -0.8 4,083,797 - Xcc-8004.4263.1 0.70 +0.7 4,083,797 - Xcc-8004.4263.1 0.70 -0.7 4,083,797 - Xcc-8004.4263.1 0.70 -0.5 4,083,797 - Xcc-8004.4263.1 0.70 -1.2 4,083,797 - Xcc-8004.4263.1 0.70 +0.0 4,083,797 - Xcc-8004.4263.1 0.70 +1.3 4,083,850 + Xcc-8004.4263.1 0.79 +0.5 4,083,850 + Xcc-8004.4263.1 0.79 +0.2 4,083,851 - Xcc-8004.4263.1 0.79 +0.1 4,083,871 + Xcc-8004.4263.1 0.83 +0.3 4,083,871 + Xcc-8004.4263.1 0.83 -0.6 4,083,871 + Xcc-8004.4263.1 0.83 -0.4 4,083,871 + Xcc-8004.4263.1 0.83 +0.5 4,083,872 - Xcc-8004.4263.1 0.83 +0.2 4,083,892 + Xcc-8004.4263.1 0.87 -0.6 4,083,892 + Xcc-8004.4263.1 0.87 +0.3 4,083,892 + Xcc-8004.4263.1 0.87 -0.0 4,083,892 + Xcc-8004.4263.1 0.87 -1.0 4,083,892 + Xcc-8004.4263.1 0.87 +0.8 4,083,892 + Xcc-8004.4263.1 0.87 +0.9 4,083,892 + Xcc-8004.4263.1 0.87 -0.3 4,083,893 - Xcc-8004.4263.1 0.87 -0.7 4,083,893 - Xcc-8004.4263.1 0.87 +0.2 4,083,893 - Xcc-8004.4263.1 0.87 +0.1 4,083,893 - Xcc-8004.4263.1 0.87 +0.5 4,083,995 + -1.1 4,083,995 + -0.1 4,083,995 + -0.4 4,083,995 + +0.5 4,083,995 + -0.0 4,083,995 + +0.6 4,083,995 + -0.1 4,083,995 + +0.1 4,083,995 + -0.9 4,083,995 + -0.3 4,083,995 + -0.2 4,083,995 + +0.8 4,083,996 - -1.4 4,083,996 - +0.0 4,083,996 - -0.7 4,083,996 - +0.3 4,083,996 - +0.3 4,083,996 - +1.0 4,083,996 - -0.1 4,083,996 - +0.6 4,083,996 - +0.7 4,083,996 - -1.1 4,083,996 - -1.4 4,083,997 + +0.2 4,083,997 + -1.1 4,083,997 + -0.5 4,083,997 + +1.6 4,083,998 - +0.9 4,083,998 - -1.5 4,083,998 - -1.1 4,083,998 - +0.8 4,084,021 + -1.1 4,084,039 + Xcc-8004.4264.1 0.12 -1.1 4,084,040 - Xcc-8004.4264.1 0.12 +0.5 4,084,040 - Xcc-8004.4264.1 0.12 -1.4 4,084,076 + Xcc-8004.4264.1 0.19 -0.9 4,084,555 + +0.1 4,084,555 + +0.1 4,084,555 + +0.6 4,084,555 + -0.6 4,084,555 + -0.0 4,084,555 + -0.9 4,084,555 + +0.4 4,084,555 + -1.4 4,084,555 + -0.7 4,084,556 - -0.4 4,084,556 - -0.1 4,084,556 - -0.8 4,084,556 - +1.0 4,084,556 - +0.4 4,084,556 - -0.3 4,084,781 - Xcc-8004.4265.1 0.23 -0.1 4,084,800 + Xcc-8004.4265.1 0.25 +0.6 4,084,800 + Xcc-8004.4265.1 0.25 +0.9 4,084,801 - Xcc-8004.4265.1 0.25 -0.5 4,084,801 - Xcc-8004.4265.1 0.25 -0.1 4,085,022 + Xcc-8004.4265.1 0.50 -0.9 4,085,022 + Xcc-8004.4265.1 0.50 +0.8 4,085,022 + Xcc-8004.4265.1 0.50 +0.8 4,085,023 - Xcc-8004.4265.1 0.50 -0.9 4,085,023 - Xcc-8004.4265.1 0.50 -2.5 4,085,023 - Xcc-8004.4265.1 0.50 +0.1 4,085,023 - Xcc-8004.4265.1 0.50 +0.3 4,085,095 + Xcc-8004.4265.1 0.58 -0.5 4,085,095 + Xcc-8004.4265.1 0.58 +0.2 4,085,095 + Xcc-8004.4265.1 0.58 +0.7 4,085,096 - Xcc-8004.4265.1 0.58 +0.5 4,085,096 - Xcc-8004.4265.1 0.58 +0.5 4,085,096 - Xcc-8004.4265.1 0.58 -1.7 4,085,122 + Xcc-8004.4265.1 0.61 -0.7 4,085,399 + +0.2 4,085,399 + -1.7 4,085,420 - -0.0 4,085,554 + +1.1 4,085,554 + +0.6 4,085,554 + +0.8 4,085,554 + -1.0 4,085,554 + +1.7 4,085,563 + -0.7 4,085,563 + +1.1 4,085,564 - +1.1 4,085,564 - -0.8 4,085,565 + -0.1 4,085,565 + +1.5 4,085,575 + -1.0 4,085,575 + -0.9 4,085,575 + +2.3 4,085,587 + -0.7 4,085,587 + +0.9
Or see this region's nucleotide sequence