Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1811.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1809.1 and Xcc-8004.1810.1 are separated by 179 nucleotidesXcc-8004.1810.1 and Xcc-8004.1811.1 are separated by 1 nucleotidesXcc-8004.1811.1 and Xcc-8004.1812.1 are separated by 30 nucleotides Xcc-8004.1809.1: Xcc-8004.1809.1 - extracellular serine protease, at 1,744,641 to 1,745,030 Xcc-8004.1809.1 Xcc-8004.1810.1: Xcc-8004.1810.1 - FIG01210140: hypothetical protein, at 1,745,210 to 1,745,830 Xcc-8004.1810.1 Xcc-8004.1811.1: Xcc-8004.1811.1 - extracellular serine protease, at 1,745,832 to 1,746,218 Xcc-8004.1811.1 Xcc-8004.1812.1: Xcc-8004.1812.1 - extracellular serine protease, at 1,746,249 to 1,747,613 Xcc-8004.1812.1 Position (kb) 1745 1746 1747Strain fitness (log2 ratio) -2 -1 0 1at 1744.905 kb on + strand, within Xcc-8004.1809.1at 1744.906 kb on - strand, within Xcc-8004.1809.1at 1745.022 kb on + strandat 1745.023 kb on - strandat 1745.023 kb on - strandat 1745.097 kb on - strandat 1745.336 kb on - strand, within Xcc-8004.1810.1at 1745.351 kb on - strand, within Xcc-8004.1810.1at 1745.351 kb on - strand, within Xcc-8004.1810.1at 1745.351 kb on - strand, within Xcc-8004.1810.1at 1745.352 kb on + strand, within Xcc-8004.1810.1at 1745.550 kb on + strand, within Xcc-8004.1810.1at 1745.691 kb on + strand, within Xcc-8004.1810.1at 1745.691 kb on + strand, within Xcc-8004.1810.1at 1745.691 kb on + strand, within Xcc-8004.1810.1at 1745.692 kb on - strand, within Xcc-8004.1810.1at 1745.968 kb on + strand, within Xcc-8004.1811.1at 1745.986 kb on + strand, within Xcc-8004.1811.1at 1745.986 kb on + strand, within Xcc-8004.1811.1at 1746.209 kb on + strandat 1746.238 kb on + strandat 1746.352 kb on + strandat 1746.352 kb on + strandat 1746.353 kb on - strandat 1746.406 kb on + strand, within Xcc-8004.1812.1at 1746.407 kb on - strand, within Xcc-8004.1812.1at 1746.407 kb on - strand, within Xcc-8004.1812.1at 1746.407 kb on - strand, within Xcc-8004.1812.1at 1746.407 kb on - strand, within Xcc-8004.1812.1at 1746.407 kb on - strand, within Xcc-8004.1812.1at 1746.511 kb on + strand, within Xcc-8004.1812.1at 1746.511 kb on + strand, within Xcc-8004.1812.1at 1746.631 kb on + strand, within Xcc-8004.1812.1at 1746.632 kb on - strand, within Xcc-8004.1812.1at 1746.748 kb on + strand, within Xcc-8004.1812.1at 1746.748 kb on + strand, within Xcc-8004.1812.1at 1746.748 kb on + strand, within Xcc-8004.1812.1at 1746.749 kb on - strand, within Xcc-8004.1812.1at 1746.803 kb on + strand, within Xcc-8004.1812.1at 1746.803 kb on + strand, within Xcc-8004.1812.1at 1746.803 kb on + strand, within Xcc-8004.1812.1at 1746.803 kb on + strand, within Xcc-8004.1812.1at 1746.803 kb on + strand, within Xcc-8004.1812.1at 1746.804 kb on - strand, within Xcc-8004.1812.1at 1746.940 kb on + strand, within Xcc-8004.1812.1at 1746.941 kb on - strand, within Xcc-8004.1812.1at 1746.941 kb on - strand, within Xcc-8004.1812.1at 1747.093 kb on + strand, within Xcc-8004.1812.1at 1747.108 kb on + strand, within Xcc-8004.1812.1at 1747.109 kb on - strand, within Xcc-8004.1812.1at 1747.132 kb on - strand, within Xcc-8004.1812.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
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1,744,905 + Xcc-8004.1809.1 0.68 -0.2
1,744,906 - Xcc-8004.1809.1 0.68 -0.4
1,745,022 + -0.2
1,745,023 - -1.0
1,745,023 - +0.7
1,745,097 - +0.3
1,745,336 - Xcc-8004.1810.1 0.20 -0.6
1,745,351 - Xcc-8004.1810.1 0.23 -0.3
1,745,351 - Xcc-8004.1810.1 0.23 +0.5
1,745,351 - Xcc-8004.1810.1 0.23 +0.4
1,745,352 + Xcc-8004.1810.1 0.23 +0.1
1,745,550 + Xcc-8004.1810.1 0.55 -0.2
1,745,691 + Xcc-8004.1810.1 0.77 -1.2
1,745,691 + Xcc-8004.1810.1 0.77 +1.4
1,745,691 + Xcc-8004.1810.1 0.77 +0.7
1,745,692 - Xcc-8004.1810.1 0.78 +0.3
1,745,968 + Xcc-8004.1811.1 0.35 -0.9
1,745,986 + Xcc-8004.1811.1 0.40 -0.8
1,745,986 + Xcc-8004.1811.1 0.40 -0.6
1,746,209 + +1.1
1,746,238 + -2.1
1,746,352 + -0.2
1,746,352 + -0.8
1,746,353 - +0.6
1,746,406 + Xcc-8004.1812.1 0.12 -0.8
1,746,407 - Xcc-8004.1812.1 0.12 -1.0
1,746,407 - Xcc-8004.1812.1 0.12 +1.2
1,746,407 - Xcc-8004.1812.1 0.12 -0.6
1,746,407 - Xcc-8004.1812.1 0.12 -0.7
1,746,407 - Xcc-8004.1812.1 0.12 +0.4
1,746,511 + Xcc-8004.1812.1 0.19 -1.2
1,746,511 + Xcc-8004.1812.1 0.19 -1.2
1,746,631 + Xcc-8004.1812.1 0.28 +1.1
1,746,632 - Xcc-8004.1812.1 0.28 +0.2
1,746,748 + Xcc-8004.1812.1 0.37 -0.6
1,746,748 + Xcc-8004.1812.1 0.37 +0.0
1,746,748 + Xcc-8004.1812.1 0.37 -0.9
1,746,749 - Xcc-8004.1812.1 0.37 -1.0
1,746,803 + Xcc-8004.1812.1 0.41 +0.8
1,746,803 + Xcc-8004.1812.1 0.41 -0.3
1,746,803 + Xcc-8004.1812.1 0.41 +0.2
1,746,803 + Xcc-8004.1812.1 0.41 -0.4
1,746,803 + Xcc-8004.1812.1 0.41 +0.1
1,746,804 - Xcc-8004.1812.1 0.41 +0.1
1,746,940 + Xcc-8004.1812.1 0.51 -0.8
1,746,941 - Xcc-8004.1812.1 0.51 -0.1
1,746,941 - Xcc-8004.1812.1 0.51 -1.5
1,747,093 + Xcc-8004.1812.1 0.62 +0.7
1,747,108 + Xcc-8004.1812.1 0.63 -0.1
1,747,109 - Xcc-8004.1812.1 0.63 -0.3
1,747,132 - Xcc-8004.1812.1 0.65 +0.4

Or see this region's nucleotide sequence