Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4488

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4487 and Pf6N2E2_4488 are separated by 188 nucleotidesPf6N2E2_4488 and Pf6N2E2_4489 are separated by 128 nucleotidesPf6N2E2_4489 and Pf6N2E2_4490 are separated by 9 nucleotides Pf6N2E2_4487 - YD repeat protein, at 5,220,141 to 5,221,238 _4487 Pf6N2E2_4488 - Ribonucleotide reductase, alpha subunit, at 5,221,427 to 5,221,684 _4488 Pf6N2E2_4489 - Putative activity regulator of membrane protease YbbK, at 5,221,813 to 5,222,262 _4489 Pf6N2E2_4490 - Putative stomatin/prohibitin-family membrane protease subunit YbbK, at 5,222,272 to 5,223,192 _4490 Position (kb) 5221 5222Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5220.438 kb on + strand, within Pf6N2E2_4487at 5220.438 kb on + strand, within Pf6N2E2_4487at 5220.438 kb on + strand, within Pf6N2E2_4487at 5220.438 kb on + strand, within Pf6N2E2_4487at 5220.438 kb on + strand, within Pf6N2E2_4487at 5220.438 kb on + strand, within Pf6N2E2_4487at 5220.439 kb on - strand, within Pf6N2E2_4487at 5220.439 kb on - strand, within Pf6N2E2_4487at 5220.439 kb on - strand, within Pf6N2E2_4487at 5220.439 kb on - strand, within Pf6N2E2_4487at 5220.440 kb on + strand, within Pf6N2E2_4487at 5220.440 kb on + strand, within Pf6N2E2_4487at 5220.441 kb on - strand, within Pf6N2E2_4487at 5220.441 kb on - strand, within Pf6N2E2_4487at 5220.528 kb on + strand, within Pf6N2E2_4487at 5220.528 kb on + strand, within Pf6N2E2_4487at 5220.528 kb on + strand, within Pf6N2E2_4487at 5220.528 kb on + strand, within Pf6N2E2_4487at 5220.529 kb on - strand, within Pf6N2E2_4487at 5220.529 kb on - strand, within Pf6N2E2_4487at 5220.529 kb on - strand, within Pf6N2E2_4487at 5220.532 kb on + strand, within Pf6N2E2_4487at 5220.532 kb on + strand, within Pf6N2E2_4487at 5220.533 kb on - strand, within Pf6N2E2_4487at 5220.555 kb on + strand, within Pf6N2E2_4487at 5220.555 kb on + strand, within Pf6N2E2_4487at 5220.556 kb on - strand, within Pf6N2E2_4487at 5220.556 kb on - strand, within Pf6N2E2_4487at 5220.556 kb on - strand, within Pf6N2E2_4487at 5220.557 kb on + strand, within Pf6N2E2_4487at 5220.557 kb on + strand, within Pf6N2E2_4487at 5220.557 kb on + strand, within Pf6N2E2_4487at 5220.558 kb on - strand, within Pf6N2E2_4487at 5220.633 kb on + strand, within Pf6N2E2_4487at 5220.633 kb on + strand, within Pf6N2E2_4487at 5220.633 kb on + strand, within Pf6N2E2_4487at 5220.633 kb on + strand, within Pf6N2E2_4487at 5220.634 kb on - strand, within Pf6N2E2_4487at 5220.634 kb on - strand, within Pf6N2E2_4487at 5220.634 kb on - strand, within Pf6N2E2_4487at 5220.653 kb on + strand, within Pf6N2E2_4487at 5220.654 kb on - strand, within Pf6N2E2_4487at 5220.656 kb on + strand, within Pf6N2E2_4487at 5220.656 kb on + strand, within Pf6N2E2_4487at 5220.657 kb on - strand, within Pf6N2E2_4487at 5220.668 kb on + strand, within Pf6N2E2_4487at 5220.686 kb on - strand, within Pf6N2E2_4487at 5220.698 kb on + strand, within Pf6N2E2_4487at 5220.707 kb on + strand, within Pf6N2E2_4487at 5220.708 kb on - strand, within Pf6N2E2_4487at 5220.708 kb on - strand, within Pf6N2E2_4487at 5220.711 kb on + strand, within Pf6N2E2_4487at 5220.719 kb on + strand, within Pf6N2E2_4487at 5220.738 kb on + strand, within Pf6N2E2_4487at 5220.741 kb on + strand, within Pf6N2E2_4487at 5220.743 kb on + strand, within Pf6N2E2_4487at 5220.792 kb on - strand, within Pf6N2E2_4487at 5220.795 kb on + strand, within Pf6N2E2_4487at 5221.008 kb on + strand, within Pf6N2E2_4487at 5221.009 kb on - strand, within Pf6N2E2_4487at 5221.009 kb on - strand, within Pf6N2E2_4487at 5221.009 kb on - strand, within Pf6N2E2_4487at 5221.060 kb on - strand, within Pf6N2E2_4487at 5221.069 kb on - strand, within Pf6N2E2_4487at 5221.069 kb on - strand, within Pf6N2E2_4487at 5221.094 kb on + strand, within Pf6N2E2_4487at 5221.159 kb on + strandat 5221.159 kb on + strandat 5221.160 kb on - strandat 5221.172 kb on + strandat 5221.226 kb on - strandat 5221.354 kb on - strandat 5221.460 kb on - strand, within Pf6N2E2_4488at 5221.626 kb on + strand, within Pf6N2E2_4488at 5221.626 kb on + strand, within Pf6N2E2_4488at 5221.627 kb on - strand, within Pf6N2E2_4488at 5221.627 kb on - strand, within Pf6N2E2_4488at 5221.627 kb on - strand, within Pf6N2E2_4488at 5221.627 kb on - strand, within Pf6N2E2_4488at 5221.715 kb on + strandat 5221.747 kb on + strandat 5221.747 kb on + strandat 5221.747 kb on + strandat 5221.747 kb on + strandat 5221.747 kb on + strandat 5221.747 kb on + strandat 5221.747 kb on + strandat 5221.747 kb on + strandat 5221.747 kb on + strandat 5221.747 kb on + strandat 5221.748 kb on - strandat 5221.748 kb on - strandat 5221.748 kb on - strandat 5221.748 kb on - strandat 5221.748 kb on - strandat 5221.769 kb on + strandat 5221.769 kb on + strandat 5221.769 kb on + strandat 5221.769 kb on + strandat 5221.769 kb on + strandat 5221.769 kb on + strandat 5221.769 kb on + strandat 5221.769 kb on + strandat 5221.770 kb on - strandat 5221.770 kb on - strandat 5221.770 kb on - strandat 5221.770 kb on - strandat 5221.770 kb on - strandat 5221.770 kb on - strandat 5221.770 kb on - strandat 5221.794 kb on + strandat 5221.795 kb on - strandat 5221.795 kb on - strandat 5221.795 kb on - strandat 5222.051 kb on + strand, within Pf6N2E2_4489at 5222.051 kb on + strand, within Pf6N2E2_4489at 5222.052 kb on - strand, within Pf6N2E2_4489at 5222.052 kb on - strand, within Pf6N2E2_4489at 5222.052 kb on - strand, within Pf6N2E2_4489at 5222.052 kb on - strand, within Pf6N2E2_4489at 5222.052 kb on - strand, within Pf6N2E2_4489at 5222.052 kb on - strand, within Pf6N2E2_4489at 5222.172 kb on - strand, within Pf6N2E2_4489at 5222.262 kb on + strandat 5222.262 kb on + strandat 5222.262 kb on + strandat 5222.262 kb on + strandat 5222.262 kb on + strandat 5222.262 kb on + strandat 5222.263 kb on - strandat 5222.263 kb on - strandat 5222.263 kb on - strandat 5222.263 kb on - strandat 5222.263 kb on - strandat 5222.411 kb on + strand, within Pf6N2E2_4490at 5222.412 kb on - strand, within Pf6N2E2_4490at 5222.412 kb on - strand, within Pf6N2E2_4490at 5222.412 kb on - strand, within Pf6N2E2_4490at 5222.412 kb on - strand, within Pf6N2E2_4490at 5222.412 kb on - strand, within Pf6N2E2_4490at 5222.429 kb on + strand, within Pf6N2E2_4490at 5222.429 kb on + strand, within Pf6N2E2_4490at 5222.430 kb on - strand, within Pf6N2E2_4490at 5222.430 kb on - strand, within Pf6N2E2_4490at 5222.646 kb on + strand, within Pf6N2E2_4490at 5222.646 kb on + strand, within Pf6N2E2_4490at 5222.647 kb on - strand, within Pf6N2E2_4490at 5222.647 kb on - strand, within Pf6N2E2_4490

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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5,220,438 + Pf6N2E2_4487 0.27 +0.2
5,220,438 + Pf6N2E2_4487 0.27 -0.7
5,220,438 + Pf6N2E2_4487 0.27 -1.3
5,220,438 + Pf6N2E2_4487 0.27 -0.6
5,220,438 + Pf6N2E2_4487 0.27 +1.2
5,220,438 + Pf6N2E2_4487 0.27 +0.2
5,220,439 - Pf6N2E2_4487 0.27 -1.1
5,220,439 - Pf6N2E2_4487 0.27 -0.7
5,220,439 - Pf6N2E2_4487 0.27 -1.1
5,220,439 - Pf6N2E2_4487 0.27 +0.1
5,220,440 + Pf6N2E2_4487 0.27 +0.1
5,220,440 + Pf6N2E2_4487 0.27 +0.2
5,220,441 - Pf6N2E2_4487 0.27 -0.6
5,220,441 - Pf6N2E2_4487 0.27 -0.1
5,220,528 + Pf6N2E2_4487 0.35 -0.4
5,220,528 + Pf6N2E2_4487 0.35 -2.8
5,220,528 + Pf6N2E2_4487 0.35 -0.3
5,220,528 + Pf6N2E2_4487 0.35 +0.7
5,220,529 - Pf6N2E2_4487 0.35 -0.2
5,220,529 - Pf6N2E2_4487 0.35 +0.1
5,220,529 - Pf6N2E2_4487 0.35 +0.1
5,220,532 + Pf6N2E2_4487 0.36 -1.4
5,220,532 + Pf6N2E2_4487 0.36 +0.3
5,220,533 - Pf6N2E2_4487 0.36 -0.9
5,220,555 + Pf6N2E2_4487 0.38 +0.7
5,220,555 + Pf6N2E2_4487 0.38 +0.1
5,220,556 - Pf6N2E2_4487 0.38 +0.2
5,220,556 - Pf6N2E2_4487 0.38 +0.2
5,220,556 - Pf6N2E2_4487 0.38 +0.4
5,220,557 + Pf6N2E2_4487 0.38 -0.0
5,220,557 + Pf6N2E2_4487 0.38 -0.0
5,220,557 + Pf6N2E2_4487 0.38 +0.5
5,220,558 - Pf6N2E2_4487 0.38 -0.1
5,220,633 + Pf6N2E2_4487 0.45 -0.3
5,220,633 + Pf6N2E2_4487 0.45 +0.1
5,220,633 + Pf6N2E2_4487 0.45 +0.7
5,220,633 + Pf6N2E2_4487 0.45 +1.7
5,220,634 - Pf6N2E2_4487 0.45 +0.7
5,220,634 - Pf6N2E2_4487 0.45 +1.1
5,220,634 - Pf6N2E2_4487 0.45 -0.1
5,220,653 + Pf6N2E2_4487 0.47 -0.2
5,220,654 - Pf6N2E2_4487 0.47 -0.5
5,220,656 + Pf6N2E2_4487 0.47 +0.3
5,220,656 + Pf6N2E2_4487 0.47 +0.7
5,220,657 - Pf6N2E2_4487 0.47 +0.1
5,220,668 + Pf6N2E2_4487 0.48 +1.2
5,220,686 - Pf6N2E2_4487 0.50 +0.5
5,220,698 + Pf6N2E2_4487 0.51 +0.5
5,220,707 + Pf6N2E2_4487 0.52 -0.4
5,220,708 - Pf6N2E2_4487 0.52 -0.2
5,220,708 - Pf6N2E2_4487 0.52 -0.8
5,220,711 + Pf6N2E2_4487 0.52 -0.8
5,220,719 + Pf6N2E2_4487 0.53 +0.4
5,220,738 + Pf6N2E2_4487 0.54 -3.0
5,220,741 + Pf6N2E2_4487 0.55 -0.2
5,220,743 + Pf6N2E2_4487 0.55 -1.3
5,220,792 - Pf6N2E2_4487 0.59 +0.4
5,220,795 + Pf6N2E2_4487 0.60 +0.5
5,221,008 + Pf6N2E2_4487 0.79 -0.1
5,221,009 - Pf6N2E2_4487 0.79 -0.1
5,221,009 - Pf6N2E2_4487 0.79 +0.1
5,221,009 - Pf6N2E2_4487 0.79 +1.2
5,221,060 - Pf6N2E2_4487 0.84 +0.9
5,221,069 - Pf6N2E2_4487 0.85 +0.6
5,221,069 - Pf6N2E2_4487 0.85 -0.4
5,221,094 + Pf6N2E2_4487 0.87 -0.2
5,221,159 + +0.4
5,221,159 + -0.1
5,221,160 - +1.2
5,221,172 + +0.1
5,221,226 - +0.8
5,221,354 - -0.4
5,221,460 - Pf6N2E2_4488 0.13 -1.0
5,221,626 + Pf6N2E2_4488 0.77 -1.2
5,221,626 + Pf6N2E2_4488 0.77 -1.3
5,221,627 - Pf6N2E2_4488 0.78 +0.3
5,221,627 - Pf6N2E2_4488 0.78 +0.0
5,221,627 - Pf6N2E2_4488 0.78 -0.7
5,221,627 - Pf6N2E2_4488 0.78 -0.3
5,221,715 + +0.7
5,221,747 + +1.1
5,221,747 + +0.8
5,221,747 + -2.4
5,221,747 + -0.6
5,221,747 + +0.2
5,221,747 + +1.0
5,221,747 + -0.7
5,221,747 + +0.6
5,221,747 + -0.7
5,221,747 + +0.1
5,221,748 - -0.4
5,221,748 - -2.6
5,221,748 - +0.0
5,221,748 - -0.6
5,221,748 - +0.5
5,221,769 + -0.3
5,221,769 + -1.3
5,221,769 + -0.0
5,221,769 + +0.1
5,221,769 + +0.5
5,221,769 + +0.8
5,221,769 + -0.8
5,221,769 + -1.2
5,221,770 - +0.6
5,221,770 - -0.1
5,221,770 - -0.3
5,221,770 - +0.2
5,221,770 - -0.7
5,221,770 - +0.1
5,221,770 - -1.1
5,221,794 + -0.9
5,221,795 - -1.2
5,221,795 - +1.2
5,221,795 - -0.0
5,222,051 + Pf6N2E2_4489 0.53 +0.5
5,222,051 + Pf6N2E2_4489 0.53 -0.2
5,222,052 - Pf6N2E2_4489 0.53 +0.5
5,222,052 - Pf6N2E2_4489 0.53 +0.1
5,222,052 - Pf6N2E2_4489 0.53 +0.1
5,222,052 - Pf6N2E2_4489 0.53 +1.8
5,222,052 - Pf6N2E2_4489 0.53 -0.4
5,222,052 - Pf6N2E2_4489 0.53 -0.7
5,222,172 - Pf6N2E2_4489 0.80 -2.2
5,222,262 + +0.4
5,222,262 + +0.3
5,222,262 + -0.5
5,222,262 + -0.5
5,222,262 + +0.5
5,222,262 + +0.4
5,222,263 - +0.4
5,222,263 - +0.3
5,222,263 - +0.6
5,222,263 - +0.8
5,222,263 - -0.0
5,222,411 + Pf6N2E2_4490 0.15 +0.7
5,222,412 - Pf6N2E2_4490 0.15 -0.9
5,222,412 - Pf6N2E2_4490 0.15 -0.5
5,222,412 - Pf6N2E2_4490 0.15 +0.7
5,222,412 - Pf6N2E2_4490 0.15 +0.5
5,222,412 - Pf6N2E2_4490 0.15 -1.9
5,222,429 + Pf6N2E2_4490 0.17 +0.3
5,222,429 + Pf6N2E2_4490 0.17 +0.2
5,222,430 - Pf6N2E2_4490 0.17 +1.4
5,222,430 - Pf6N2E2_4490 0.17 +1.2
5,222,646 + Pf6N2E2_4490 0.41 +1.2
5,222,646 + Pf6N2E2_4490 0.41 -0.2
5,222,647 - Pf6N2E2_4490 0.41 +1.0
5,222,647 - Pf6N2E2_4490 0.41 -0.5

Or see this region's nucleotide sequence