Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1095

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1094 and Pf6N2E2_1095 overlap by 11 nucleotidesPf6N2E2_1095 and Pf6N2E2_1096 overlap by 8 nucleotides Pf6N2E2_1094 - Opine oxidase subunit B, at 1,281,875 to 1,282,999 _1094 Pf6N2E2_1095 - Opine oxidase subunit C, at 1,282,989 to 1,283,318 _1095 Pf6N2E2_1096 - Sarcosine oxidase alpha subunit (EC 1.5.3.1), at 1,283,311 to 1,284,681 _1096 Position (kb) 1282 1283 1284Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1282.055 kb on + strand, within Pf6N2E2_1094at 1282.055 kb on + strandat 1282.056 kb on - strand, within Pf6N2E2_1094at 1282.140 kb on + strand, within Pf6N2E2_1094at 1282.140 kb on + strand, within Pf6N2E2_1094at 1282.140 kb on + strand, within Pf6N2E2_1094at 1282.140 kb on + strand, within Pf6N2E2_1094at 1282.140 kb on + strand, within Pf6N2E2_1094at 1282.141 kb on - strand, within Pf6N2E2_1094at 1282.141 kb on - strand, within Pf6N2E2_1094at 1282.367 kb on + strand, within Pf6N2E2_1094at 1282.368 kb on - strand, within Pf6N2E2_1094at 1282.608 kb on - strand, within Pf6N2E2_1094at 1282.615 kb on + strand, within Pf6N2E2_1094at 1282.615 kb on + strand, within Pf6N2E2_1094at 1282.615 kb on + strand, within Pf6N2E2_1094at 1282.616 kb on - strand, within Pf6N2E2_1094at 1282.619 kb on + strand, within Pf6N2E2_1094at 1282.619 kb on + strand, within Pf6N2E2_1094at 1282.619 kb on + strand, within Pf6N2E2_1094at 1282.619 kb on + strand, within Pf6N2E2_1094at 1282.619 kb on + strand, within Pf6N2E2_1094at 1282.620 kb on - strand, within Pf6N2E2_1094at 1282.620 kb on - strand, within Pf6N2E2_1094at 1282.620 kb on - strand, within Pf6N2E2_1094at 1282.620 kb on - strand, within Pf6N2E2_1094at 1282.620 kb on - strand, within Pf6N2E2_1094at 1282.620 kb on - strand, within Pf6N2E2_1094at 1282.620 kb on - strand, within Pf6N2E2_1094at 1282.620 kb on - strand, within Pf6N2E2_1094at 1282.620 kb on - strand, within Pf6N2E2_1094at 1282.758 kb on + strand, within Pf6N2E2_1094at 1282.759 kb on - strand, within Pf6N2E2_1094at 1282.759 kb on - strand, within Pf6N2E2_1094at 1282.817 kb on + strand, within Pf6N2E2_1094at 1282.818 kb on - strand, within Pf6N2E2_1094at 1282.818 kb on - strand, within Pf6N2E2_1094at 1282.818 kb on - strand, within Pf6N2E2_1094at 1282.818 kb on - strand, within Pf6N2E2_1094at 1282.852 kb on + strand, within Pf6N2E2_1094at 1283.163 kb on + strand, within Pf6N2E2_1095at 1283.163 kb on + strand, within Pf6N2E2_1095at 1283.316 kb on + strandat 1283.441 kb on + strandat 1283.441 kb on + strandat 1283.441 kb on + strandat 1283.441 kb on + strandat 1283.441 kb on + strandat 1283.441 kb on + strandat 1283.441 kb on + strandat 1283.442 kb on - strandat 1283.442 kb on - strandat 1283.442 kb on - strandat 1283.442 kb on - strandat 1283.443 kb on + strandat 1283.497 kb on + strand, within Pf6N2E2_1096at 1283.498 kb on - strand, within Pf6N2E2_1096at 1283.498 kb on - strand, within Pf6N2E2_1096at 1283.498 kb on - strand, within Pf6N2E2_1096at 1283.599 kb on + strand, within Pf6N2E2_1096at 1283.599 kb on + strand, within Pf6N2E2_1096at 1283.599 kb on + strand, within Pf6N2E2_1096at 1283.600 kb on - strand, within Pf6N2E2_1096at 1283.797 kb on + strand, within Pf6N2E2_1096at 1283.798 kb on - strand, within Pf6N2E2_1096at 1283.798 kb on - strand, within Pf6N2E2_1096at 1283.815 kb on + strand, within Pf6N2E2_1096at 1283.815 kb on + strand, within Pf6N2E2_1096at 1284.165 kb on + strand, within Pf6N2E2_1096

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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1,282,055 + Pf6N2E2_1094 0.16 -0.2
1,282,055 + +0.9
1,282,056 - Pf6N2E2_1094 0.16 +0.3
1,282,140 + Pf6N2E2_1094 0.24 +1.3
1,282,140 + Pf6N2E2_1094 0.24 +0.1
1,282,140 + Pf6N2E2_1094 0.24 -0.2
1,282,140 + Pf6N2E2_1094 0.24 +1.3
1,282,140 + Pf6N2E2_1094 0.24 +1.2
1,282,141 - Pf6N2E2_1094 0.24 -0.4
1,282,141 - Pf6N2E2_1094 0.24 +1.5
1,282,367 + Pf6N2E2_1094 0.44 +0.3
1,282,368 - Pf6N2E2_1094 0.44 +2.6
1,282,608 - Pf6N2E2_1094 0.65 +0.1
1,282,615 + Pf6N2E2_1094 0.66 +0.2
1,282,615 + Pf6N2E2_1094 0.66 -1.0
1,282,615 + Pf6N2E2_1094 0.66 +0.5
1,282,616 - Pf6N2E2_1094 0.66 -0.3
1,282,619 + Pf6N2E2_1094 0.66 -0.5
1,282,619 + Pf6N2E2_1094 0.66 +0.8
1,282,619 + Pf6N2E2_1094 0.66 -1.7
1,282,619 + Pf6N2E2_1094 0.66 +0.0
1,282,619 + Pf6N2E2_1094 0.66 -1.0
1,282,620 - Pf6N2E2_1094 0.66 +0.6
1,282,620 - Pf6N2E2_1094 0.66 +0.1
1,282,620 - Pf6N2E2_1094 0.66 +1.4
1,282,620 - Pf6N2E2_1094 0.66 +0.0
1,282,620 - Pf6N2E2_1094 0.66 +0.6
1,282,620 - Pf6N2E2_1094 0.66 -1.1
1,282,620 - Pf6N2E2_1094 0.66 -0.7
1,282,620 - Pf6N2E2_1094 0.66 +0.1
1,282,620 - Pf6N2E2_1094 0.66 -1.2
1,282,758 + Pf6N2E2_1094 0.78 +1.5
1,282,759 - Pf6N2E2_1094 0.79 +0.4
1,282,759 - Pf6N2E2_1094 0.79 +0.6
1,282,817 + Pf6N2E2_1094 0.84 +0.5
1,282,818 - Pf6N2E2_1094 0.84 -1.1
1,282,818 - Pf6N2E2_1094 0.84 -0.7
1,282,818 - Pf6N2E2_1094 0.84 -0.3
1,282,818 - Pf6N2E2_1094 0.84 +0.8
1,282,852 + Pf6N2E2_1094 0.87 +1.0
1,283,163 + Pf6N2E2_1095 0.53 -0.4
1,283,163 + Pf6N2E2_1095 0.53 -0.8
1,283,316 + -0.6
1,283,441 + +0.8
1,283,441 + +0.0
1,283,441 + +1.1
1,283,441 + -0.1
1,283,441 + +0.0
1,283,441 + +0.5
1,283,441 + -1.1
1,283,442 - -1.0
1,283,442 - -0.5
1,283,442 - +0.1
1,283,442 - -3.3
1,283,443 + +1.5
1,283,497 + Pf6N2E2_1096 0.14 +0.7
1,283,498 - Pf6N2E2_1096 0.14 -0.6
1,283,498 - Pf6N2E2_1096 0.14 -0.6
1,283,498 - Pf6N2E2_1096 0.14 +0.4
1,283,599 + Pf6N2E2_1096 0.21 +0.0
1,283,599 + Pf6N2E2_1096 0.21 +0.7
1,283,599 + Pf6N2E2_1096 0.21 +0.1
1,283,600 - Pf6N2E2_1096 0.21 -0.8
1,283,797 + Pf6N2E2_1096 0.35 -0.6
1,283,798 - Pf6N2E2_1096 0.36 -0.4
1,283,798 - Pf6N2E2_1096 0.36 +0.2
1,283,815 + Pf6N2E2_1096 0.37 +1.0
1,283,815 + Pf6N2E2_1096 0.37 -0.1
1,284,165 + Pf6N2E2_1096 0.62 -0.2

Or see this region's nucleotide sequence