Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1094 and Pf6N2E2_1095 overlap by 11 nucleotides Pf6N2E2_1095 and Pf6N2E2_1096 overlap by 8 nucleotides
Pf6N2E2_1094 - Opine oxidase subunit B, at 1,281,875 to 1,282,999
_1094
Pf6N2E2_1095 - Opine oxidase subunit C, at 1,282,989 to 1,283,318
_1095
Pf6N2E2_1096 - Sarcosine oxidase alpha subunit (EC 1.5.3.1), at 1,283,311 to 1,284,681
_1096
Position (kb)
1282
1283
1284 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1282.055 kb on + strand, within Pf6N2E2_1094 at 1282.055 kb on + strand at 1282.056 kb on - strand, within Pf6N2E2_1094 at 1282.140 kb on + strand, within Pf6N2E2_1094 at 1282.140 kb on + strand, within Pf6N2E2_1094 at 1282.140 kb on + strand, within Pf6N2E2_1094 at 1282.140 kb on + strand, within Pf6N2E2_1094 at 1282.140 kb on + strand, within Pf6N2E2_1094 at 1282.141 kb on - strand, within Pf6N2E2_1094 at 1282.141 kb on - strand, within Pf6N2E2_1094 at 1282.367 kb on + strand, within Pf6N2E2_1094 at 1282.368 kb on - strand, within Pf6N2E2_1094 at 1282.608 kb on - strand, within Pf6N2E2_1094 at 1282.615 kb on + strand, within Pf6N2E2_1094 at 1282.615 kb on + strand, within Pf6N2E2_1094 at 1282.615 kb on + strand, within Pf6N2E2_1094 at 1282.616 kb on - strand, within Pf6N2E2_1094 at 1282.619 kb on + strand, within Pf6N2E2_1094 at 1282.619 kb on + strand, within Pf6N2E2_1094 at 1282.619 kb on + strand, within Pf6N2E2_1094 at 1282.619 kb on + strand, within Pf6N2E2_1094 at 1282.619 kb on + strand, within Pf6N2E2_1094 at 1282.620 kb on - strand, within Pf6N2E2_1094 at 1282.620 kb on - strand, within Pf6N2E2_1094 at 1282.620 kb on - strand, within Pf6N2E2_1094 at 1282.620 kb on - strand, within Pf6N2E2_1094 at 1282.620 kb on - strand, within Pf6N2E2_1094 at 1282.620 kb on - strand, within Pf6N2E2_1094 at 1282.620 kb on - strand, within Pf6N2E2_1094 at 1282.620 kb on - strand, within Pf6N2E2_1094 at 1282.620 kb on - strand, within Pf6N2E2_1094 at 1282.758 kb on + strand, within Pf6N2E2_1094 at 1282.759 kb on - strand, within Pf6N2E2_1094 at 1282.759 kb on - strand, within Pf6N2E2_1094 at 1282.817 kb on + strand, within Pf6N2E2_1094 at 1282.818 kb on - strand, within Pf6N2E2_1094 at 1282.818 kb on - strand, within Pf6N2E2_1094 at 1282.818 kb on - strand, within Pf6N2E2_1094 at 1282.818 kb on - strand, within Pf6N2E2_1094 at 1282.852 kb on + strand, within Pf6N2E2_1094 at 1283.163 kb on + strand, within Pf6N2E2_1095 at 1283.163 kb on + strand, within Pf6N2E2_1095 at 1283.316 kb on + strand at 1283.441 kb on + strand at 1283.441 kb on + strand at 1283.441 kb on + strand at 1283.441 kb on + strand at 1283.441 kb on + strand at 1283.441 kb on + strand at 1283.441 kb on + strand at 1283.442 kb on - strand at 1283.442 kb on - strand at 1283.442 kb on - strand at 1283.442 kb on - strand at 1283.443 kb on + strand at 1283.497 kb on + strand, within Pf6N2E2_1096 at 1283.498 kb on - strand, within Pf6N2E2_1096 at 1283.498 kb on - strand, within Pf6N2E2_1096 at 1283.498 kb on - strand, within Pf6N2E2_1096 at 1283.599 kb on + strand, within Pf6N2E2_1096 at 1283.599 kb on + strand, within Pf6N2E2_1096 at 1283.599 kb on + strand, within Pf6N2E2_1096 at 1283.600 kb on - strand, within Pf6N2E2_1096 at 1283.797 kb on + strand, within Pf6N2E2_1096 at 1283.798 kb on - strand, within Pf6N2E2_1096 at 1283.798 kb on - strand, within Pf6N2E2_1096 at 1283.815 kb on + strand, within Pf6N2E2_1096 at 1283.815 kb on + strand, within Pf6N2E2_1096 at 1284.165 kb on + strand, within Pf6N2E2_1096
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N) remove 1,282,055 + Pf6N2E2_1094 0.16 -0.2 1,282,055 + +0.9 1,282,056 - Pf6N2E2_1094 0.16 +0.3 1,282,140 + Pf6N2E2_1094 0.24 +1.3 1,282,140 + Pf6N2E2_1094 0.24 +0.1 1,282,140 + Pf6N2E2_1094 0.24 -0.2 1,282,140 + Pf6N2E2_1094 0.24 +1.3 1,282,140 + Pf6N2E2_1094 0.24 +1.2 1,282,141 - Pf6N2E2_1094 0.24 -0.4 1,282,141 - Pf6N2E2_1094 0.24 +1.5 1,282,367 + Pf6N2E2_1094 0.44 +0.3 1,282,368 - Pf6N2E2_1094 0.44 +2.6 1,282,608 - Pf6N2E2_1094 0.65 +0.1 1,282,615 + Pf6N2E2_1094 0.66 +0.2 1,282,615 + Pf6N2E2_1094 0.66 -1.0 1,282,615 + Pf6N2E2_1094 0.66 +0.5 1,282,616 - Pf6N2E2_1094 0.66 -0.3 1,282,619 + Pf6N2E2_1094 0.66 -0.5 1,282,619 + Pf6N2E2_1094 0.66 +0.8 1,282,619 + Pf6N2E2_1094 0.66 -1.7 1,282,619 + Pf6N2E2_1094 0.66 +0.0 1,282,619 + Pf6N2E2_1094 0.66 -1.0 1,282,620 - Pf6N2E2_1094 0.66 +0.6 1,282,620 - Pf6N2E2_1094 0.66 +0.1 1,282,620 - Pf6N2E2_1094 0.66 +1.4 1,282,620 - Pf6N2E2_1094 0.66 +0.0 1,282,620 - Pf6N2E2_1094 0.66 +0.6 1,282,620 - Pf6N2E2_1094 0.66 -1.1 1,282,620 - Pf6N2E2_1094 0.66 -0.7 1,282,620 - Pf6N2E2_1094 0.66 +0.1 1,282,620 - Pf6N2E2_1094 0.66 -1.2 1,282,758 + Pf6N2E2_1094 0.78 +1.5 1,282,759 - Pf6N2E2_1094 0.79 +0.4 1,282,759 - Pf6N2E2_1094 0.79 +0.6 1,282,817 + Pf6N2E2_1094 0.84 +0.5 1,282,818 - Pf6N2E2_1094 0.84 -1.1 1,282,818 - Pf6N2E2_1094 0.84 -0.7 1,282,818 - Pf6N2E2_1094 0.84 -0.3 1,282,818 - Pf6N2E2_1094 0.84 +0.8 1,282,852 + Pf6N2E2_1094 0.87 +1.0 1,283,163 + Pf6N2E2_1095 0.53 -0.4 1,283,163 + Pf6N2E2_1095 0.53 -0.8 1,283,316 + -0.6 1,283,441 + +0.8 1,283,441 + +0.0 1,283,441 + +1.1 1,283,441 + -0.1 1,283,441 + +0.0 1,283,441 + +0.5 1,283,441 + -1.1 1,283,442 - -1.0 1,283,442 - -0.5 1,283,442 - +0.1 1,283,442 - -3.3 1,283,443 + +1.5 1,283,497 + Pf6N2E2_1096 0.14 +0.7 1,283,498 - Pf6N2E2_1096 0.14 -0.6 1,283,498 - Pf6N2E2_1096 0.14 -0.6 1,283,498 - Pf6N2E2_1096 0.14 +0.4 1,283,599 + Pf6N2E2_1096 0.21 +0.0 1,283,599 + Pf6N2E2_1096 0.21 +0.7 1,283,599 + Pf6N2E2_1096 0.21 +0.1 1,283,600 - Pf6N2E2_1096 0.21 -0.8 1,283,797 + Pf6N2E2_1096 0.35 -0.6 1,283,798 - Pf6N2E2_1096 0.36 -0.4 1,283,798 - Pf6N2E2_1096 0.36 +0.2 1,283,815 + Pf6N2E2_1096 0.37 +1.0 1,283,815 + Pf6N2E2_1096 0.37 -0.1 1,284,165 + Pf6N2E2_1096 0.62 -0.2
Or see this region's nucleotide sequence