Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03755

Experiment: Mc formate, casamino free, with 10mM L-Threonine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03745 and MMP_RS03750 are separated by 13 nucleotidesMMP_RS03750 and MMP_RS03755 are separated by 12 nucleotidesMMP_RS03755 and MMP_RS03760 are separated by 383 nucleotidesMMP_RS03760 and MMP_RS03765 are separated by 37 nucleotides MMP_RS03745: MMP_RS03745 - phenylacetate--CoA ligase, at 708,565 to 709,863 _RS03745 MMP_RS03750: MMP_RS03750 - ACT domain-containing protein, at 709,877 to 710,302 _RS03750 MMP_RS03755: MMP_RS03755 - MarR family transcriptional regulator, at 710,315 to 710,851 _RS03755 MMP_RS03760: MMP_RS03760 - hypothetical protein, at 711,235 to 711,585 _RS03760 MMP_RS03765: MMP_RS03765 - CopG family ribbon-helix-helix protein, at 711,623 to 712,030 _RS03765 Position (kb) 710 711Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 709.413 kb on + strand, within MMP_RS03745at 709.416 kb on - strand, within MMP_RS03745at 709.417 kb on + strand, within MMP_RS03745at 709.417 kb on + strand, within MMP_RS03745at 709.640 kb on - strand, within MMP_RS03745at 709.657 kb on + strand, within MMP_RS03745at 709.796 kb on - strandat 709.797 kb on + strandat 709.927 kb on + strand, within MMP_RS03750at 710.010 kb on - strand, within MMP_RS03750at 710.091 kb on - strand, within MMP_RS03750at 710.159 kb on + strand, within MMP_RS03750at 710.172 kb on + strand, within MMP_RS03750at 710.175 kb on - strand, within MMP_RS03750at 710.175 kb on - strand, within MMP_RS03750at 710.176 kb on + strand, within MMP_RS03750at 710.248 kb on + strand, within MMP_RS03750at 710.301 kb on + strandat 710.326 kb on - strandat 710.375 kb on + strand, within MMP_RS03755at 710.415 kb on + strand, within MMP_RS03755at 710.478 kb on + strand, within MMP_RS03755at 710.483 kb on + strand, within MMP_RS03755at 710.483 kb on + strand, within MMP_RS03755at 710.502 kb on - strand, within MMP_RS03755at 710.502 kb on - strand, within MMP_RS03755at 710.503 kb on + strand, within MMP_RS03755at 710.524 kb on - strand, within MMP_RS03755at 710.525 kb on + strand, within MMP_RS03755at 710.525 kb on + strand, within MMP_RS03755at 710.525 kb on + strand, within MMP_RS03755at 710.616 kb on + strand, within MMP_RS03755at 710.636 kb on - strand, within MMP_RS03755at 710.636 kb on - strand, within MMP_RS03755at 710.637 kb on + strand, within MMP_RS03755at 710.637 kb on + strand, within MMP_RS03755at 710.643 kb on - strand, within MMP_RS03755at 710.643 kb on - strand, within MMP_RS03755at 710.643 kb on - strand, within MMP_RS03755at 710.643 kb on - strand, within MMP_RS03755at 710.644 kb on + strand, within MMP_RS03755at 710.644 kb on + strand, within MMP_RS03755at 710.653 kb on - strand, within MMP_RS03755at 710.750 kb on + strand, within MMP_RS03755at 710.767 kb on - strand, within MMP_RS03755at 710.783 kb on - strand, within MMP_RS03755at 710.784 kb on + strand, within MMP_RS03755at 710.818 kb on + strandat 710.831 kb on - strandat 710.832 kb on + strandat 710.832 kb on + strandat 710.832 kb on + strandat 710.875 kb on - strandat 710.875 kb on - strandat 710.942 kb on + strandat 711.055 kb on - strandat 711.055 kb on - strandat 711.082 kb on - strandat 711.086 kb on + strandat 711.088 kb on - strandat 711.092 kb on - strandat 711.092 kb on - strandat 711.092 kb on - strandat 711.094 kb on - strandat 711.202 kb on - strandat 711.202 kb on - strandat 711.205 kb on + strandat 711.255 kb on + strandat 711.342 kb on - strand, within MMP_RS03760at 711.371 kb on - strand, within MMP_RS03760at 711.371 kb on - strand, within MMP_RS03760at 711.371 kb on - strand, within MMP_RS03760at 711.371 kb on - strand, within MMP_RS03760at 711.372 kb on + strand, within MMP_RS03760at 711.372 kb on + strand, within MMP_RS03760at 711.372 kb on + strand, within MMP_RS03760at 711.372 kb on + strand, within MMP_RS03760at 711.372 kb on + strand, within MMP_RS03760at 711.372 kb on + strand, within MMP_RS03760at 711.372 kb on + strand, within MMP_RS03760at 711.373 kb on - strand, within MMP_RS03760at 711.402 kb on - strand, within MMP_RS03760at 711.402 kb on - strand, within MMP_RS03760at 711.408 kb on - strand, within MMP_RS03760at 711.408 kb on - strand, within MMP_RS03760at 711.412 kb on - strand, within MMP_RS03760at 711.427 kb on - strand, within MMP_RS03760at 711.435 kb on + strand, within MMP_RS03760at 711.444 kb on - strand, within MMP_RS03760at 711.444 kb on - strand, within MMP_RS03760at 711.566 kb on + strandat 711.569 kb on - strandat 711.598 kb on - strandat 711.598 kb on - strandat 711.602 kb on - strandat 711.602 kb on - strandat 711.602 kb on - strandat 711.633 kb on - strandat 711.633 kb on - strandat 711.690 kb on - strand, within MMP_RS03765

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Per-strain Table

Position Strand Gene LocusTag Fraction Mc formate, casamino free, with 10mM L-Threonine
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709,413 + MMP_RS03745 0.65 -1.9
709,416 - MMP_RS03745 0.66 +0.3
709,417 + MMP_RS03745 0.66 +0.6
709,417 + MMP_RS03745 0.66 +0.3
709,640 - MMP_RS03745 0.83 +1.8
709,657 + MMP_RS03745 0.84 -1.0
709,796 - +0.8
709,797 + -1.5
709,927 + MMP_RS03750 0.12 -0.0
710,010 - MMP_RS03750 0.31 +0.6
710,091 - MMP_RS03750 0.50 +0.3
710,159 + MMP_RS03750 0.66 -1.2
710,172 + MMP_RS03750 0.69 +2.0
710,175 - MMP_RS03750 0.70 +1.4
710,175 - MMP_RS03750 0.70 +0.9
710,176 + MMP_RS03750 0.70 -0.9
710,248 + MMP_RS03750 0.87 -0.0
710,301 + +0.7
710,326 - -1.7
710,375 + MMP_RS03755 0.11 -2.4
710,415 + MMP_RS03755 0.19 -1.3
710,478 + MMP_RS03755 0.30 -1.7
710,483 + MMP_RS03755 0.31 -1.4
710,483 + MMP_RS03755 0.31 -1.2
710,502 - MMP_RS03755 0.35 -1.4
710,502 - MMP_RS03755 0.35 -1.4
710,503 + MMP_RS03755 0.35 -3.1
710,524 - MMP_RS03755 0.39 -0.9
710,525 + MMP_RS03755 0.39 -0.1
710,525 + MMP_RS03755 0.39 -1.5
710,525 + MMP_RS03755 0.39 -2.3
710,616 + MMP_RS03755 0.56 -1.8
710,636 - MMP_RS03755 0.60 -0.8
710,636 - MMP_RS03755 0.60 -1.8
710,637 + MMP_RS03755 0.60 +0.9
710,637 + MMP_RS03755 0.60 -0.8
710,643 - MMP_RS03755 0.61 -1.1
710,643 - MMP_RS03755 0.61 -0.3
710,643 - MMP_RS03755 0.61 -2.8
710,643 - MMP_RS03755 0.61 +1.9
710,644 + MMP_RS03755 0.61 -2.1
710,644 + MMP_RS03755 0.61 -1.7
710,653 - MMP_RS03755 0.63 -1.3
710,750 + MMP_RS03755 0.81 -1.1
710,767 - MMP_RS03755 0.84 -1.7
710,783 - MMP_RS03755 0.87 -1.2
710,784 + MMP_RS03755 0.87 -1.2
710,818 + -1.6
710,831 - -2.6
710,832 + -1.1
710,832 + -1.2
710,832 + +0.7
710,875 - -1.3
710,875 - -1.0
710,942 + -1.4
711,055 - -1.0
711,055 - -1.1
711,082 - +1.2
711,086 + -0.2
711,088 - +0.7
711,092 - +1.4
711,092 - +0.3
711,092 - -1.4
711,094 - -0.3
711,202 - +0.2
711,202 - +0.1
711,205 + +0.3
711,255 + +0.6
711,342 - MMP_RS03760 0.30 +0.5
711,371 - MMP_RS03760 0.39 -1.2
711,371 - MMP_RS03760 0.39 +0.3
711,371 - MMP_RS03760 0.39 +1.5
711,371 - MMP_RS03760 0.39 +0.5
711,372 + MMP_RS03760 0.39 +0.9
711,372 + MMP_RS03760 0.39 +0.6
711,372 + MMP_RS03760 0.39 +0.3
711,372 + MMP_RS03760 0.39 +1.1
711,372 + MMP_RS03760 0.39 +0.2
711,372 + MMP_RS03760 0.39 +0.4
711,372 + MMP_RS03760 0.39 -0.7
711,373 - MMP_RS03760 0.39 -2.1
711,402 - MMP_RS03760 0.48 +1.8
711,402 - MMP_RS03760 0.48 -1.2
711,408 - MMP_RS03760 0.49 -0.9
711,408 - MMP_RS03760 0.49 +0.3
711,412 - MMP_RS03760 0.50 -0.7
711,427 - MMP_RS03760 0.55 -0.7
711,435 + MMP_RS03760 0.57 +0.3
711,444 - MMP_RS03760 0.60 +0.3
711,444 - MMP_RS03760 0.60 -0.7
711,566 + +0.2
711,569 - -2.0
711,598 - -0.1
711,598 - +0.4
711,602 - +0.2
711,602 - -0.8
711,602 - +0.6
711,633 - -1.0
711,633 - +0.2
711,690 - MMP_RS03765 0.16 +1.4

Or see this region's nucleotide sequence