Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02600

Experiment: Mc formate, casamino free, with 10mM L-Threonine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02590 and MMP_RS02595 are separated by 212 nucleotidesMMP_RS02595 and MMP_RS02600 are separated by 302 nucleotidesMMP_RS02600 and MMP_RS02605 overlap by 7 nucleotidesMMP_RS02605 and MMP_RS02610 overlap by 1 nucleotides MMP_RS02590: MMP_RS02590 - low molecular weight phosphatase family protein, at 485,802 to 486,212 _RS02590 MMP_RS02595: MMP_RS02595 - putative zinc-binding protein, at 486,425 to 486,886 _RS02595 MMP_RS02600: MMP_RS02600 - DUF2149 domain-containing protein, at 487,189 to 487,527 _RS02600 MMP_RS02605: MMP_RS02605 - MotA/TolQ/ExbB proton channel family protein, at 487,521 to 488,162 _RS02605 MMP_RS02610: MMP_RS02610 - DUF2162 domain-containing protein, at 488,162 to 488,881 _RS02610 Position (kb) 487 488Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 486.207 kb on + strandat 486.232 kb on - strandat 486.244 kb on - strandat 486.249 kb on - strandat 486.249 kb on - strandat 486.253 kb on - strandat 486.253 kb on - strandat 486.253 kb on - strandat 486.254 kb on + strandat 486.254 kb on + strandat 486.255 kb on - strandat 486.255 kb on - strandat 486.256 kb on + strandat 486.269 kb on - strandat 486.269 kb on - strandat 486.270 kb on + strandat 486.271 kb on - strandat 486.271 kb on - strandat 486.272 kb on + strandat 486.281 kb on - strandat 486.291 kb on - strandat 486.292 kb on + strandat 486.293 kb on - strandat 486.319 kb on - strandat 486.346 kb on - strandat 486.347 kb on + strandat 486.712 kb on - strand, within MMP_RS02595at 486.886 kb on - strandat 486.890 kb on - strandat 486.929 kb on - strandat 486.934 kb on - strandat 486.937 kb on - strandat 486.937 kb on - strandat 486.938 kb on + strandat 486.981 kb on + strandat 486.987 kb on - strandat 486.987 kb on - strandat 486.987 kb on - strandat 486.987 kb on - strandat 486.987 kb on - strandat 486.988 kb on + strandat 486.988 kb on + strandat 486.988 kb on + strandat 486.988 kb on + strandat 486.988 kb on + strandat 487.065 kb on - strandat 487.066 kb on + strandat 487.072 kb on - strandat 487.073 kb on + strandat 487.073 kb on + strandat 487.083 kb on - strandat 487.090 kb on - strandat 487.090 kb on - strandat 487.090 kb on - strandat 487.090 kb on - strandat 487.090 kb on - strandat 487.091 kb on + strandat 487.094 kb on - strandat 487.094 kb on - strandat 487.095 kb on + strandat 487.209 kb on - strandat 487.979 kb on - strand, within MMP_RS02605at 488.214 kb on - strandat 488.219 kb on - strandat 488.219 kb on - strandat 488.219 kb on - strandat 488.278 kb on + strand, within MMP_RS02610

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Per-strain Table

Position Strand Gene LocusTag Fraction Mc formate, casamino free, with 10mM L-Threonine
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486,207 + -0.0
486,232 - +0.4
486,244 - -0.6
486,249 - +0.5
486,249 - +0.4
486,253 - +0.1
486,253 - +0.3
486,253 - -0.1
486,254 + +0.1
486,254 + -0.0
486,255 - -0.2
486,255 - -0.8
486,256 + +0.6
486,269 - +0.3
486,269 - -1.0
486,270 + -0.2
486,271 - +0.8
486,271 - +0.6
486,272 + -0.5
486,281 - +1.3
486,291 - +0.3
486,292 + +0.4
486,293 - +0.3
486,319 - +0.2
486,346 - +0.6
486,347 + -1.2
486,712 - MMP_RS02595 0.62 -0.1
486,886 - +0.0
486,890 - +1.5
486,929 - +0.0
486,934 - -0.1
486,937 - +0.8
486,937 - -0.1
486,938 + -1.7
486,981 + +1.1
486,987 - +0.4
486,987 - +0.8
486,987 - +0.4
486,987 - -0.3
486,987 - +1.5
486,988 + +0.2
486,988 + +0.4
486,988 + +0.8
486,988 + +0.5
486,988 + -0.6
487,065 - +0.9
487,066 + +1.6
487,072 - +3.1
487,073 + +0.7
487,073 + -0.8
487,083 - -0.9
487,090 - +0.9
487,090 - +0.4
487,090 - -0.6
487,090 - -0.2
487,090 - -1.1
487,091 + -0.3
487,094 - +1.2
487,094 - +1.9
487,095 + -2.6
487,209 - -0.2
487,979 - MMP_RS02605 0.71 -3.5
488,214 - +0.3
488,219 - +0.3
488,219 - +0.8
488,219 - +0.5
488,278 + MMP_RS02610 0.16 -0.1

Or see this region's nucleotide sequence